Faculty Profiles - ABE Hiroshi

Papers - ABE Hiroshi

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Structural optimization of pseudorotaxane-forming oligonucleotides for efficient and stable complex formation

Onizuka Kazumitsu, Miyashita Takuya, Chikuni Tomoko, Ozawa Mamiko, Abe Hiroshi, Nagatsugi Fumi

NUCLEIC ACIDS RESEARCH Vol. 46 ( 17 ) page： 8710 - 8719 2018.9

MGST1, a GSH transferase/peroxidase essential for development and hematopoietic stem cell differentiation

Brautigam Lars, Zhang Jie, Dreij Kristian, Spahiu Linda, Holmgren Arne, Abe Hiroshi, Tew Kenneth D., Townsend Danyelle M., Kelner Michael J., Morgenstern Ralf, Johansson Katarina

REDOX BIOLOGY Vol. 17 page： 171 - 179 2018.7

Chemical ligation reaction for oligonucleotides based on electrophilic phosphorothioester Reviewed

Kimura Yasuaki, Maruyama Hideto, Oikawa Ryota, Hayakawa Mayu, Abe Naoko, Tsuji Genichiro, Matsuda Akira, Shuto Satoshi, Ito Yoshihiro, Abe Hiroshi

ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY Vol. 255 2018.3

Development of glutathione S-transferase (GST) covalent inhibitor

Shishido Yuko, Tomoike Fumiaki, Kimura Yasuaki, Kuwata Keiko, Yano Takato, Fukui Kenji, Fujikawa Haruka, Sekido Yoshitaka, Murakami-Tonami Yuko, Kameda Tomoshi, Shuto Satoshi, Abe Hiroshi

ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY Vol. 255 page： . 2018.3

Nano structure design for RNA interference

Shu Zhaoma, Abe Naoko, Tomoike Fumiaki, Kimura Yasuaki, Ito Yoshihiro, Abe Hiroshi

ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY Vol. 255 page： . 2018.3

Chemical ligation reaction for oligonucleotides based on electrophilic phosphorothioester

Kimura Yasuaki, Maruyama Hideto, Oikawa Ryota, Hayakawa Mayu, Abe Naoko, Tsuji Genichiro, Matsuda Akira, Shuto Satoshi, Ito Yoshihiro, Abe Hiroshi

ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY Vol. 255 page： . 2018.3

Chemical Ligation Reactions of Oligonucleotides for Biological and Medicinal Applications

Abe Hiroshi, Kimura Yasuaki

CHEMICAL & PHARMACEUTICAL BULLETIN Vol. 66 ( 2 ) page： 117-122 2018.2

Development of GST (Glutathione S-transferase) covalent inhibitor

Shishido Yuko, Sekido Yoshitaka, Murakami-Tonami Yuko, Abe Hiroshi

CANCER SCIENCE Vol. 109 page： 374-374 2018.1

MGST1, a GSH transferase/peroxidase essential for development and hematopoietic stem cell differentiation Reviewed

Lars Bräutigam, Jie Zhang, Kristian Dreij, Linda Spahiu, Arne Holmgren, Hiroshi Abe, Kenneth D. Tew, Danyelle M. Townsend, Michael J. Kelner, Ralf Morgenstern, Katarina Johansson

Redox Biology Vol. 17 page： 171 - 179 2018

Preparation of circular RNA in vitro Reviewed

Naoko Abe, Ayumi Kodama, Hiroshi Abe

Methods in Molecular Biology Vol. 1724 page： 181 - 192 2018

Language：English Publishing type：Part of collection (book) Publisher：Humana Press Inc.

This chapter describes a simple and straightforward way to obtain single-stranded circular RNA sequences in vitro. Linear RNA that is phosphorylated at the 5′ end is first prepared by a chemical or enzymatic method, then circularized using ligase. The function of the prepared circular RNA molecule, such as an ability to induce translation, can then be investigated.

DOI： 10.1007/978-1-4939-7562-4_15

Chemical Ligation Reactions of Oligonucleotides for Biological and Medicinal Applications

Hiroshi Abe, Yasuaki Kimura

Chemical and Pharmaceutical Bulletin Vol. 66 ( 2 ) page： 117 - 122 2018

Structural optimization of pseudorotaxane-forming oligonucleotides for efficient and stable complex formation Reviewed

Kazumitsu Onizuka, Takuya Miyashita, Tomoko Chikuni, Mamiko Ozawa, Hiroshi Abe, Fumi Nagatsugi

Nucleic Acids Research Vol. 46 page： 8710 - 8719 2018

グルタチオン-S-トランスフェラーゼを標的とした共有結合性阻害剤の開発

宍戸裕子, 藤川遥加, 友池史明, 木村康明, 桑田啓子, 村上優子, 福井健二, 関戸好孝, 矢野貴人, 周東智, 阿部洋

生命科学系学会合同年次大会 Vol. 2017年度 page： [3P - 0205] 2017.12

A covalent G-site inhibitor for glutathione S-transferase Pi (GSTP(1-1)) Reviewed

Yuko Shishido, Fumiaki Tomoike, Yasuaki Kimura, Keiko Kuwata, Takato Yano, Kenji Fukui, Haruka Fujikawa, Yoshitaka Sekido, Yuko Murakami-Tonami, Tomoshi Kameda, Satoshi Shuto, Hiroshi Abe

CHEMICAL COMMUNICATIONS Vol. 53 ( 81 ) page： 11138 - 11141 2017.10

Language：English Publishing type：Research paper (scientific journal) Publisher：ROYAL SOC CHEMISTRY

We herein report the first covalent G-site-binding inhibitor for GST, GS-ESF (1), which irreversibly inhibited the GSTP1-1 function. LC-MS/MS and X-ray structure analyses of the covalently linked GST-inhibitor complex suggested that 1 reacted with Tyr108 of GSTP1-1. The mechanism of covalent bond formation was discussed based on MD simulation results.

DOI： 10.1039/c7cc05829b

Tethered 1,2-Si-Group Migrations in Radical-Mediated Ring Enlargements of Cyclic Alkoxysilanes: An EPR Spectroscopic and Computational Investigation

Walton John C., Kanada Ryutaro, Iwamoto Takeaki, Shuto Satoshi, Abe Hiroshi

JOURNAL OF ORGANIC CHEMISTRY Vol. 82 ( 13 ) page： 6886-6894 2017.7

Chemical ligation of oligonucleotides using an electrophilic phosphorothioester Reviewed

Hideto Maruyama, Ryota Oikawa, Mayu Hayakawa, Shono Takamori, Yasuaki Kimura, Naoko Abe, Genichiro Tsuji, Akira Matsuda, Satoshi Shuto, Yoshihiro Ito, Hiroshi Abe

Nucleic Acids Research Vol. 45 ( 12 ) page： 7042-7048 2017.7

Enhancement of synergistic gene silencing by RNA interference using branched "3-in-1" trimer siRNA

Nair Baiju G., Zhou Yue, Hagiwara Kyoji, Ueki Masashi, Isoshima Takashi, Abe Hiroshi, Ito Yoshihiro

JOURNAL OF MATERIALS CHEMISTRY B Vol. 5 ( 22 ) page： 4044-4051 2017.6

Pseudorotaxane formation via the slippage process with chemically cyclized oligonucleotides

Onizuka Kazumitsu, Chikuni Tomoko, Amemiya Takuya, Miyashita Takuya, Onizuka Kyoko, Abe Hiroshi, Nagatsugi Fumi

NUCLEIC ACIDS RESEARCH Vol. 45 ( 9 ) page： 5036-5047 2017.5

Enhancement of synergistic gene silencing by RNA interference using branched “3-in-1” trimer siRNA Reviewed

Vol. 5 page： 4044-4051 2017.5

Rolling Circle Translation of Circular RNA

ABE Naoko, ABE Hiroshi

Seibutsu Butsuri Vol. 57 ( 1 ) page： 5 - 10 2017

Language：Japanese Publisher：The Biophysical Society of Japan General Incorporated Association

<p>In an <i>E. coli</i> cell-free translation system, we found that a circular RNA containing an infinite open reading frame produced more translation product than its linear counterpart by two orders of magnitude, because a ribosome can work more effectively towards the elongation on circular RNA than it can on linear RNA. We then tested circular RNAs containing an infinite open reading frame could be translated in eukaryotic systems, in the absence of any particular element for internal ribosome entry, a poly-A tail, or a cap structure. We found that the circular RNAs also produced long peptides in eukaryotic translation systems, possibly owing to the rolling circle amplification mechanism.</p>

DOI： 10.2142/biophys.57.005

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