Updated on 2025/06/02

写真a

 
NAKAYAMA Tomoya
 
Organization
Institute of Transformative Bio-Molecules Designated lecturer
Title
Designated lecturer
External link

Degree 1

  1. 博士(農学) ( 2019.3   名古屋大学 ) 

Research Interests 9

  1. 温度適応

  2. Seasonal adaptation

  3. Animal physiology

  4. 分子生物学

  5. Photoperiodism

  6. Medaka fish

  7. Temperature adaptation

  8. Omics analysis

  9. Genome editing

Research Areas 5

  1. Life Science / Aquatic life science

  2. Life Science / Laboratory animal science

  3. Life Science / Animal physiological chemistry, physiology and behavioral biology

  4. Life Science / Animal physiological chemistry, physiology and behavioral biology

  5. Life Science / Molecular biology

Research History 5

  1. Nagoya University   Graduate School of Bioagricultural Sciences   Designated assistant professor

    2025.4

  2. Nagoya University   Nagoya University

    2020.4 - 2025.3

  3. Research Fellowship for Young Scientists   PD

    2019.4 - 2020.3

  4. JSPS Research Fellowship for Young Scientists   DC2

    2018.4 - 2019.3

  5. National Institute for Basic Biology   Technical assistant

    2016.1 - 2016.3

Education 3

  1. National Institutes of Natural Sciences

    2016.4 - 2019.3

  2. Graduate School of Bioagricultural Sciences, Nagoya University

    2016.4 - 2019.3

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    Notes: Advisor: Prof. Takashi Yoshimura

  3. National Institute for Basic Biology

    2016.4 - 2019.3

Professional Memberships 4

  1. 日本水産学会

    2021

  2. 日本生態学会

    2019

  3. 日本動物学会

    2017

  4. 日本時間生物学会

    2016

Committee Memberships 2

  1.   生物リズム若手研究者の集い, 世話人  

    2024.1   

  2.   日本時間生物学会, 評議員  

    2022.8   

Awards 4

  1. 第19回わかしゃち奨励賞(基礎研究部門・優秀賞)

    2025.1   公益財団法人科学技術交流財団・公益財団法人日比科学技術振興財団   メダカに学ぶ温度適応機構 水産有用種への応用で挑む気候変動対策

    中山 友哉

  2. 日本動物学会奨励賞

    2024.9   日本動物学会   脊椎動物の生理機能や行動の季節変化を司る分子機構の解明

    中山 友哉

  3. 日本時間生物学会優秀ポスター賞

    2019.10   日本時間生物学会   長鎖ノンコーディングRNAであるLDAIRは自己防衛行動の季節変化を制御する

    中山 友哉

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    Award type:Award from Japanese society, conference, symposium, etc. 

    第26回日本時間生物学会学術大会

  4. ITbM Research Award

    2019.1   Long-term live imaging of glutathione in cells and tissues by phospha-rhodamine based fluorescent probes

    L. Wang, S. Takeda, T. Nakayama, Y. Nakane, M. Taki

 

Papers 15

  1. Photoperiod decoder 1 regulates seasonal changes in energy metabolism through the growth hormone signaling pathway Invited Reviewed

    Tomoya Nakayama, Taiki Yamaguchi, Michiyo Maruyama, Satoshi Ansai, Makoto Kashima, Romain Fontaine, Christiaan Henkel, Kiyoshi Naruse, Takashi Yoshimura

    bioRxiv     2025.2

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    Authorship:Lead author, Corresponding author   Publisher:Cold Spring Harbor Laboratory  

    Seasonal changes in metabolism are crucial for animals to adapt to annual environmental fluctuations. However, the molecular mechanisms underlying these adaptations remain poorly understood. Here, we identified a novel gene,photoperiod decoder 1(phod1), which exhibits a unique bimodal expression pattern under long-day conditions in Japanese medaka fish (Oryzias latipes). Whilephod1is conserved across many vertebrates, except for eutherians, its function remained unknown. Single-cell RNA sequencing analysis revealed thatphod1is predominantly expressed in specific pituitary cells that co-express opsin and circadian clock genes. Transcriptomic analysis usingphod1knockout fish demonstrated thatphod1is essential for photoperiodic regulation of growth hormone. Furthermore, transcriptomic and metabolomic analyses of the liver, the primary target of growth hormone, revealed significant alterations in energy metabolism. Behavioral analysis also showed thatphod1knockout fish exhibited significantly reduced locomotor activity. These findings indicate thatphod1plays a crucial role in seasonal metabolic adaptation through modulation of the growth hormone signaling pathway.

    DOI: 10.1101/2025.02.19.638565

  2. A transcriptional program underlying the circannual rhythms of gonadal development in medaka Reviewed International journal

    Tomoya Nakayama, Miki Tanikawa, Yuki Okushi, Thoma Itoh, Tsuyoshi Shimmura, Michiyo Maruyama, Taiki Yamaguchi, Akiko Matsumiya, Ai Shinomiya, Ying-Jey Guh, Junfeng Chen, Kiyoshi Naruse, Hiroshi Kudoh, Yohei Kondo, Honda Naoki, Kazuhiro Aoki, Atsushi J. Nagano, Takashi Yoshimura

    Proceedings of the National Academy of Sciences   Vol. 120 ( 52 )   2023.12

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Proceedings of the National Academy of Sciences  

    To cope with seasonal environmental changes, organisms have evolved approximately 1-y endogenous circannual clocks. These circannual clocks regulate various physiological properties and behaviors such as reproduction, hibernation, migration, and molting, thus providing organisms with adaptive advantages. Although several hypotheses have been proposed, the genes that regulate circannual rhythms and the underlying mechanisms controlling long-term circannual clocks remain unknown in any organism. Here, we show a transcriptional program underlying the circannual clock in medaka fish ( Oryzias latipes ). We monitored the seasonal reproductive rhythms of medaka kept under natural outdoor conditions for 2 y. Linear regression analysis suggested that seasonal changes in reproductive activity were predominantly determined by an endogenous program. Medaka hypothalamic and pituitary transcriptomes were obtained monthly over 2 y and daily on all equinoxes and solstices. Analysis identified 3,341 seasonally oscillating genes and 1,381 daily oscillating genes. We then examined the existence of circannual rhythms in medaka via maintaining them under constant photoperiodic conditions. Medaka exhibited approximately 6-mo free-running circannual rhythms under constant conditions, and monthly transcriptomes under constant conditions identified 518 circannual genes. Gene ontology analysis of circannual genes highlighted the enrichment of genes related to cell proliferation and differentiation. Altogether, our findings support the “histogenesis hypothesis” that postulates the involvement of tissue remodeling in circannual time-keeping.

    DOI: 10.1073/pnas.2313514120

  3. Orphan nuclear receptor nr4a1 regulates winter depression-like behavior in medaka. Reviewed International journal

    Tomoya Nakayama, Fuka Hirano, Yuki Okushi, Kousuke Matsuura, Miki Ohashi, Akiko Matsumiya, Takashi Yoshimura

    Neuroscience letters     page: 137469 - 137469   2023.9

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

    About 10% of the population suffers from depression in winter at high latitude. Although it has become a serious public health issue, its underlying mechanism remains unknown and new treatments and therapies are required. As an adaptive strategy, many animals also exhibit depression-like behavior in winter. Previously, it has been reported that celastrol, a traditional Chinese medicine, can rescue winter depression-like behavior in medaka, an excellent model of winter depression. Nuclear receptor subfamily 4 group A member 1 (nr4a1, also known as nur77) is a known target of celastrol, and the signaling pathway of nr4a1 was suggested to be inactive in medaka brain during winter, implying the association of nr4a1 and winter depression-like behavior. However, the direct evidence for its involvement in winter depression-like behavior remains unclear. The present study found that nr4a1 was suppressed in the medaka brain under winter conditions. Cytosporone B, nr4a1 chemical activator, reversed winter depression-like behavior under winter conditions. Additionally, nr4a1 mutant fish generated by CRISPR/Cas9 system showed decreased sociability under summer conditions. Therefore, our results demonstrate that the seasonal regulation of nr4a1 regulates winter depression-like behavior and offers potential therapeutic target.

    DOI: 10.1016/j.neulet.2023.137469

    PubMed

  4. Seasonal changes in NRF2 antioxidant pathway regulates winter depression-like behavior. Reviewed International journal

    Tomoya Nakayama, Kousuke Okimura, Jiachen Shen, Ying-Jey Guh, T Katherine Tamai, Akiko Shimada, Souta Minou, Yuki Okushi, Tsuyoshi Shimmura, Yuko Furukawa, Naoya Kadofusa, Ayato Sato, Toshiya Nishimura, Minoru Tanaka, Kei Nakayama, Nobuyuki Shiina, Naoyuki Yamamoto, Andrew S Loudon, Taeko Nishiwaki-Ohkawa, Ai Shinomiya, Toshitaka Nabeshima, Yusuke Nakane, Takashi Yoshimura

    Proceedings of the National Academy of Sciences of the United States of America   Vol. 117 ( 17 ) page: 9594 - 9603   2020.4

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

    Seasonal changes in the environment lead to depression-like behaviors in humans and animals. The underlying mechanisms, however, are unknown. We observed decreased sociability and increased anxiety-like behavior in medaka fish exposed to winter-like conditions. Whole brain metabolomic analysis revealed seasonal changes in 68 metabolites, including neurotransmitters and antioxidants associated with depression. Transcriptome analysis identified 3,306 differentially expressed transcripts, including inflammatory markers, melanopsins, and circadian clock genes. Further analyses revealed seasonal changes in multiple signaling pathways implicated in depression, including the nuclear factor erythroid-derived 2-like 2 (NRF2) antioxidant pathway. A broad-spectrum chemical screen revealed that celastrol (a traditional Chinese medicine) uniquely reversed winter behavior. NRF2 is a celastrol target expressed in the habenula (HB), known to play a critical role in the pathophysiology of depression. Another NRF2 chemical activator phenocopied these effects, and an NRF2 mutant showed decreased sociability. Our study provides important insights into winter depression and offers potential therapeutic targets involving NRF2.

    DOI: 10.1073/pnas.2000278117

    PubMed

  5. Seasonal regulation of the lncRNA LDAIR modulates self-protective behaviours during the breeding season Reviewed International journal

    Tomoya Nakayama, *, Tsuyoshi Shimmura, Ai Shinomiya, Kousuke Okimura, Yusuke Takehana, Yuko Furukawa, Takayuki Shimo, Takumi Senga, Mana Nakatsukasa, Toshiya Nishimura, Minoru Tanaka, Kataaki Okubo, Yasuhiro Kamei, Kiyoshi Naruse, Takashi Yoshimura, Equal contribution

    Nature Ecology & Evolution   Vol. 3 ( 5 ) page: 1 - 8   2019.4

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Springer Science and Business Media LLC  

    DOI: 10.1038/s41559-019-0866-6

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Books 1

  1. Identification and Characterization of Genes Involved in Vertebrate Photoperiodism

    Tomoya Nakayama, Kataaki Okubo, Satoshi Ansai, Takashi Yoshimura

    2022.9 

MISC 7

  1. メダカの水槽飼育を考える「メダカと光」

    中山 友哉

    月刊アクアライフ 2024年11月号   Vol. 544   page: 37 - 37   2024.10

  2. メダカの見ている世界 ー眼の光感受性と色覚の季節変化についてー

    中山 友哉, 吉村 崇

    月刊アクアライフ 2023年5月号   Vol. 526   page: 72 - 73   2023.5

  3. メダカに学ぶ脊椎動物の冬季適応戦略 Reviewed

    中山 友哉, 吉村 崇

    低温科学   Vol. 81   page: 61 - 70   2023.3

  4. Identification and Characterization of Genes Involved in Vertebrate Photoperiodism

    Tomoya Nakayama, Kataaki Okubo, Satoshi Ansai, Takashi Yoshimura

    Circadian Clocks (Neuromethods)     2022.9

  5. ケミカルゲノミクスで明らかにするメダカの冬季うつ様行動の分子基盤 Reviewed

    沖村 光祐, 中山 友哉, 吉村 崇

    化学と生物   Vol. 59 ( 8 ) page: 369 - 376   2021.8

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Presentations 38

  1. メダカから明らかにする動物の季節適応機構〜光周反応を示す機能未知遺伝子の機能解析〜

    中山友哉

    学術変革領域研究 A 【冬眠生物学 2.0 】 ‬ ‭第2回 若手領域会議  2025.3.7 

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    Event date: 2025.3

  2. 温度適応能の季節変化を司る分子機構の解析

    中山友哉

    2024年度「先進ゲノム支援」拡大班会議  2024.12.26 

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    Event date: 2024.12

    Language:Japanese   Presentation type:Poster presentation  

  3. メダカから挑む動物の季節適応の仕組み 〜季節によって変化する生体制御メカニズム〜

    中山友哉

    基盤医学特論 異分野融合推進セミナー(6)  2024.12.24 

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    Event date: 2024.12

    Language:Japanese   Presentation type:Public lecture, seminar, tutorial, course, or other speech  

  4. 光周反応を示す機能未知遺伝子の同定とその機能解析

    中山友哉, 安齋賢, 成瀬清, 吉村崇

    第31回日本時間生物学会学術大会  2024.11.17 

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    Event date: 2024.11

    Language:Japanese   Presentation type:Poster presentation  

  5. 新規光周性遺伝子の同定とその機能解析

    中山友哉, 安齋賢, 成瀬清, 吉村崇

    令和6年度 日本水産学会 秋季大会  2024.9.25 

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    Event date: 2024.9

    Language:Japanese   Presentation type:Oral presentation (general)  

    「注目される演題」に選出。

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KAKENHI (Grants-in-Aid for Scientific Research) 14

  1. 脊椎動物の日長測時機構における時間タンパク質ダイナミクスの解明

    2025.4 - 2027.3

    日本学術振興会 科学研究費助成事業  学術変革領域研究(A)(公募研究) 

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    Authorship:Principal investigator 

  2. 魚類の季節温度適応機構の解明とその制御に向けたゲノム編集技術の開発

    2024.12 - 2026.12

    スマート育種協議会  第3回ゲノム編集テクノロジー実用化研究助成 

    中山 友哉

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    Authorship:Principal investigator 

  3. 変温動物の低温耐性の分子基盤の解明から明らかにする冬眠の分子機構

    2024.9 - 2025.3

    「先進ゲノム支援」(先進ゲノム解析研究推進プラットフォーム)支援課題 

    中山 友哉

  4. 光周反応を示す機能未知遺伝子の機能解析

    2024.9

    公益信託 成茂動物科学振興基金 

    中山 友哉

  5. Study of design principle underlying infradian rhythms and its application

    Grant number:24H00058  2024.4 - 2029.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (S)

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Teaching Experience (Off-campus) 5

  1. 名古屋大学PhD登龍門ヤングメンターコース

    2021.1 - 2021.10

  2. Animal physiology1

    2020.4 Nagoya University)

  3. 資源生物科学実験実習2

    2020.4 Nagoya University)

  4. Advanced animal physiology I

    2020.4 Nagoya University)

  5. Animal physiology2

    2020.4 Nagoya University)

 

Social Contribution 4

  1. メダカの巧みな生存戦略〜季節の変化に適応するしくみ〜

    Role(s):Appearance

    第107回 名大カフェ  2024.8

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    Audience: General

  2. 生きものは季節をどうやって知る?

    Role(s):Appearance

    日本自然保護協会 NACS-J市民カレッジ  2022.5

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    Audience: General

  3. 高校出前講義

    Role(s):Lecturer

    岐阜県立多治見北高等学校  2021.11

  4. 進路探求特別講座

    Role(s):Lecturer

    名古屋市立菊里高等学校  2020.11