Updated on 2026/07/30

写真a

 
WU Di
 
Organization
Institute for Glyco-core Research Assistant Professor
Bioscience and Biotechnology Center Assistant Professor
Graduate School
Graduate School of Bioagricultural Sciences
Title
Assistant Professor
Contact information
メールアドレス
External link

Degree 1

  1. 博士(農学) ( 2017.3   名古屋大学 ) 

 

Papers 20

  1. Development of a permethylation-based detection method for oligo/polysialic acid structures via tandem MALDI-TOF mass spectrometry Invited Reviewed

    Suzuki K, Wu D, Kitajima K, Yamakawa N, Omoto T, Hane M, Sato C.

    BBA Advances   Vol. 7:100155.   2025.3

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    Authorship:Lead author  

    DOI: 10.1016/j.bbadva.2025.100155.

  2. Diverse subcellular localizations of the insect CMP-sialic acid synthetases. Open Access

    Di W, Fujita A, Hamaguchi K, Delannoy P, Sato C, Kitajima K

    GLYCOBIOLOGY   Vol. 27 ( 4 ) page: 329 - 341   2017.4

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    Authorship:Lead author   Language:English  

    DOI: 10.1093/glycob/cww128

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  3. A novel autopolysialylation activity of the ganglioside sialyltransferase ST8Sia5 regulates its secretion and enzyme activity Open Access

    Sakamoto, F; Hatanaka, R; Hane, M; Wu, D; Kitajima, K; Sato, C

    JOURNAL OF BIOLOGICAL CHEMISTRY   Vol. 302 ( 7 )   2026.7

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    Publisher:Journal of Biological Chemistry  

    Polysialic acid (polySia) is a linear polymer of sialic acid, which usually modifies N-glycans on the neural cell adhesion molecule (NCAM) mostly in the brain and is involved in the development of brain. PolySia is also associated with several diseases, including mental disorders and cancers. ST8Sia2 and ST8Sia4 are believed to be the only polysialyltransferases that synthesize polySia on NCAM (NCAM polysialylation). These enzymes are also autopolysialylated. In this study, we first found that ST8Sia5L, a ganglioside-specific sialyltransferase, has an activity to synthesize polysialic acid on ST8Sia5 itself, but does not exhibit the NCAM polysialylation activity. Notably, in silico and biochemical analyses revealed that ST8Sia5L contains a new polysialic acid-trapping motif (PSTM) that is essential for polySia elongation, instead of the conventional polysialyltransferase domain (PSTD) found in ST8Sia2 and ST8Sia4. We also found that autopolysialylated ST8Sia5L is secreted from the cells. To identify the autopolysialylation sites involved in secretion, we performed N-glycosylation site disruption experiments, and found that N92 and N277 in the five N-glycosylation sites are important for this phenomenon. Furthermore, the inhibitor experiments showed that certain metalloprotease(s), but not exosomal pathways, are involved in the secretion. Notably, the secreted autopolysialylated enzyme showed no ganglioside-sialylation activity; however, the activity was recovered when polySia was removed by sialidase treatment. Overall, we show that autopolysialylation of ST8Sia5L regulates both its secretion and the conventional sialyltransferase activity.

    DOI: 10.1016/j.jbc.2026.113106

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  4. Prediction of Novel Disease-Related Regions in SIGLEC-7 by <i>In Silico</i> and Biochemical Analyses Open Access

    Morishita, S; Hane, M; Wu, D; Kitajima, K; Ohno, S; Yamaguchi, Y; Sato, C

    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES   Vol. 27 ( 12 )   2026.6

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    Publisher:International Journal of Molecular Sciences  

    SIGLECs are well-known receptors that distinguish self from non-self by binding to sialic acid-containing glycoconjugates, thereby regulating normal immune functions. They have also been associated with several diseases, including systemic sclerosis, leukemia, and Alzheimer’s disease. To identify pathogenic regions related to ligand binding in SIGLECs using a novel approach, we employed the in silico Individual Meta Random Forest (InMeRF) program, which predicts disease-related amino acid substitutions. InMeRF predicted a novel three-amino-acid motif (LSI) consisting of highly pathogenic amino acid residues in SIGLEC-7 and other CD33-related SIGLECs. Alanine substitution experiments and point-mutation energy calculations using SIGLEC-7 as a representative model member of the SIGLEC family showed that mutations in the LSI motif altered binding to ganglioside ligands compared with the wild type (WT) and affected structural stability, as reflected by changes in mutation energy. Structural analysis based on the crystal structure of SIGLEC-7 revealed that the LSI motif forms a buried β-strand located beneath the previously identified sialic acid-binding region (Site 2) in CD33-related SIGLEC-7. Taken together, these findings demonstrate the utility of InMeRF for identifying previously unrecognized pathogenic regions and provide new structural and functional insights into the SIGLEC family.

    DOI: 10.3390/ijms27125489

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  5. <i>N</i>- and <i>O</i>-glycans in Unfertilized Chum Salmon (<i>Oncorhynchus keta</i>) Eggs Using Glycomic Techniques Open Access

    Kurogochi, M; Suzuki, K; Wu, D; Hanamatsu, H; Kitajima, K; Sato, C; Furukawa, J

    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES   Vol. 27 ( 10 )   2026.5

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    Publisher:International Journal of Molecular Sciences  

    Genomic analysis of various fish has advanced in recent years; however, predicting glycan information from the genomic data alone remains challenging. Glycomic techniques have therefore attracted considerable attention. In this study, we analyzed N- and O-glycans in unfertilized Oncorhynchus keta eggs using glycomic techniques, such as a glycoblotting procedure, a sialic acid linkage-specific alkylamidation, and an evaporative β-elimination with pyrazolone. N-Glycomic analysis revealed that biantennary N-glycans were predominant, and that sialylation occurred via an α2,3 linkage. In addition, numerous sulfated N-glycans were observed, some of which had not been reported previously. Tandem mass spectrometry analyses indicated that most of the sulfate groups were attached to GlcNAc linked to mannose within the core structure. The sulfation sites of the unknown sulfated glycans were the same; however, a GlcNAc residue was lost from the core structure. In O-glycomics, oligo-sialylated O-glycans, which contain between one to seven sialic acid residues, were observed in the unfertilized eggs. Most of the sialic acids in the O-glycans were Neu5Gc, and there was no α2,3 linkage.

    DOI: 10.3390/ijms27104646

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  6. Recent advances in biology of modified sialic acids (Sias), sulfated Sia and deaminoneuraminic acid (Kdn)

    Kitajima, K; Nakagawa, T; Yamashita, S; Omoto, T; Wu, D; Hane, M; Sato, C

    GLYCOBIOLOGY   Vol. 35 ( 11 ) page: 10 - 10   2025.11

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  7. An enhanced dual detection of DMB-labeled sialic acids using high-resolution accurate mass spectrometry and fluorescence detection Invited Reviewed Open Access

    Omoto, T., Yamakawa, N., Wu, D., Mori, H., Takeda, U., Hane, M., Kitajima, K., Sato, C.

    BBA Adv.   Vol. 7:100152.   2025.3

  8. Development of a permethylation-based detection method for oligo/ polysialic acid structures via tandem MALDI-TOF mass spectrometry Open Access

    Suzuki, K; Wu, D; Kitajima, K; Yamakawa, N; Omoto, T; Hane, M; Sato, C

    BBA ADVANCES   Vol. 7   2025

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    Oligo/polysialic acid (oligo/polySia) refers to a class of linear polymers composed of Sias, found extensively at the non-reducing ends of glycans across various organisms, from bacteria to vertebrates. Different types of oligo/polySia have been characterized, varying in Sia composition, α-ketosidic linkages to penultimate Sia residues, and degree of polymerization. Detection of oligo/polySia-capped glycans is typically achieved through western blotting or ELISA using specific antibodies or endo-N-acylneuraminidase. Additionally, a sensitive chemical approach involving the direct labeling of oligo/polySia with 1,2-diamino-4,5-methylenedioxybenzene, followed by separation and quantification via anion-exchange high-performance liquid chromatography, has been developed. However, detection through mass spectrometry (MS) has remained challenging due to the multiple negative charges and structural instability of these glycans. In this study, we applied a permethylation technique to convert carboxyl group of Sias into methyl esters, thereby neutralizing their negative charges, which allowed for improved MS analysis of sialylated glycans. We optimized both the permethylation and glycan purification processes. Consequently, we achieved the first successful detection of polySia structures using MALDI-TOF MS. There are more in-source decay ions in the MS profiling of permethylated α2,9-linked polySias compared to α2,8-linked polySias. Furthermore, we present the first examples of oligo/polySia sequencing by collision-induced dissociation on a TOF/TOF instrument, enabling us to differentiate between α2,8- and α2,9-linked polySias. We extended this approach to analyze oligo/polySia structures with O-linked glycans in polysialoglycoprotein from salmonid eggs. For the first time, the analysis of intact oligo/polySia structures with O-linked glycans were successfully detected using MALDI-TOF/TOF MS/MS with this optimized permethylation method.

    DOI: 10.1016/j.bbadva.2025.100155

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  9. Rat hepatocytes secrete free oligosaccharides Open Access

    Huang, CC; Seino, J; Honda, A; Fujihira, H; Wu, D; Okahara, K; Kitazume, S; Nakaya, S; Kitajima, K; Sato, C; Suzuki, T

    JOURNAL OF BIOLOGICAL CHEMISTRY   Vol. 300 ( 3 )   2024.3

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    We recently established a method for the isolation of serum-free oligosaccharides, and characterized various features of their structures. However, the precise mechanism for how these glycans are formed still remains unclarified. To further investigate the mechanism responsible for these serum glycans, here, we utilized rat primary hepatocytes to examine whether they are able to secrete free glycans. Our findings indicated that a diverse array of free oligosaccharides such as sialyl/neutral free N-glycans (FNGs), as well as sialyl lactose/LacNAc-type glycans, were secreted into the culture medium by primary hepatocytes. The structural features of these free glycans in the medium were similar to those isolated from the sera of the same rat. Further evidence suggested that an oligosaccharyltransferase is involved in the release of the serum-free N-glycans. Our results indicate that the liver is indeed secreting various types of free glycans directly into the serum.

    DOI: 10.1016/j.jbc.2024.105712

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  10. Identification of a buried β-strand as a novel disease-related motif in the human polysialyltransferases Invited Reviewed Open Access

    Hatanaka R, Hane M, Hayakawa K, Morishita S, Ohno S, Yamaguchi Y, Wu D, Kitajima K, Sato C.

    J Biol Chem.   Vol. 300 ( 1 ) page: 105564   2024.1

  11. Is the linkage mode of sialic acid residues significant in normal heart development in medaka?

    Kitajima, K; Omoto, T; Wu, D; Maruyama, E; Tajima, K; Hane, M; Sato, C

    GLYCOBIOLOGY   Vol. 33 ( 11 ) page: 995 - 995   2023.12

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  12. Developmental and organ-specific expression profiles of sulfated sialic acids in medaka fish as revealed by the chemical method

    Yamashita, S; Wu, D; Hane, M; Komura, N; Ando, H; Sato, C; Kitajima, K

    GLYCOBIOLOGY   Vol. 33 ( 11 ) page: 994 - 994   2023.12

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  13. Forced expression of a2,3-sialyltransferase IV rescues impaired heart development in a2,6-sialyltransferase I-deficient medaka Open Access

    Omoto, T; Wu, D; Maruyama, E; Tajima, K; Hane, M; Sato, C; Kitajima, K

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   Vol. 649   page: 62 - 70   2023.3

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    Language:English   Publisher:Biochemical and Biophysical Research Communications  

    Sialic acids (Sias) are often linked to galactose (Gal) residues by α2,6- and α2,3-linkages in glycans of glycoproteins. Sias are indispensable for vertebrate development, because organisms deficient in some enzymes in the Sia synthetic pathway are lethal during the development. However, it remains unknown if the difference of Siaα2,6Gal or α2,3Gal linkage has a critical meaning. To find a clue to understand significance of the linkage difference at the organism level, medaka was used as a vertebrate model. In embryos, Siaα2,6Gal epitopes recognized by Sambucus nigra lectin (SNA) and Siaα2,3Gal epitopes recognized by Maackia amurensis lectin (MAA) were enriched in the blastodisc and the yolk sphere, respectively. When these lectins were injected in the perivitelline space, SNA, but not MAA, impaired embryo body formation at 1 day post-fertilization (dpf). Most Siaα2,6Gal epitopes occurred on N-glycans owing to their sensitivity to peptide:N-glycanase. Of knockout-medaka (KO) for either of two β-galactoside:α2,6-sialyltransferase genes, ST6Gal I and ST6Gal II, only ST6Gal I–KO showed severe cardiac abnormalities at 7–16 dpf, leading to lethality at 14–18 dpf. Interestingly, however, these cardiac abnormalities of ST6Gal I–KO were rescued not only by forced expression of ST6Gal I, but also by that of ST6Gal II and the β-galactoside:α2,3-sialyltransferase IV gene (ST3Gal IV). Taken together, the Siaα2,6Gal linkage synthesized by ST6Gal I are critical in heart development; however, it can be replaced by the linkages synthesized by ST6Gal II and ST3Gal IV. These data suggest that sialylation itself is more important than its particular linkage for the heart development.

    DOI: 10.1016/j.bbrc.2023.01.010

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  14. Identification and characterization of a deaminoneuraminic acid (Kdn)-specific aldolase from Sphingobacterium species

    Nakagawa, T; Iwaki, Y; Wu, D; Hane, M; Sato, C; Kitajima, K

    GLYCOBIOLOGY   Vol. 33 ( 1 ) page: 47 - 56   2023.1

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    Language:English   Publisher:Glycobiology  

    Sialic acid (Sia) is a group of acidic sugars with a 9-carbon backbone, and classified into 3 species based on the substituent group at C5 position: N-acetylneuraminic acid (Neu5Ac), N-glycolylneuraminic acid (Neu5Gc), and deaminoneuraminic acid (Kdn). In Escherichia coli, the sialate aldolase or N-acetylneuraminate aldolase (NanA) is known to catabolize these Sia species into pyruvate and the corresponding 6-carbon mannose derivatives. However, in bacteria, very little is known about the catabolism of Kdn, compared with Neu5Ac. In this study, we found a novel Kdn-specific aldolase (Kdn-aldolase), which can exclusively degrade Kdn, but not Neu5Ac or Neu5Gc, from Sphingobacterium sp., which was previously isolated from a Kdn-assimilating bacterium. Kdn-aldolase had the optimal pH and temperature at 7.0–8.0 and 50 <sup>◦</sup>C, respectively. It also had the synthetic activity of Kdn from pyruvate and mannose. Site-specific mutagenesis revealed that N50 residue was important for the Kdn-specific reaction. Existence of the Kdn-aldolase suggests that Kdn-specific metabolism may play a specialized role in some bacteria.

    DOI: 10.1093/glycob/cwac053

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  15. Critical Role of the Cortical Alveolus Protease Alveolin in Chorion Hardening In Vivo at Medaka Fertilization Open Access

    Fu, B; Wu, D; Yasumasu, S; Hane, M; Sato, C; Kitajima, K

    BIOMOLECULES   Vol. 13 ( 1 )   2023.1

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    Language:English   Publisher:Biomolecules  

    Alveolin is a cortical alveolus proteinase that is secreted in the perivitelline space (PVS) at fertilization to act on the chorion. Purified alveolin is known to induce chorion hardening in vitro by processing zona pellucida B (ZPB), a major chorion component. However, in vivo function of alveolin remains unclear; thus, in this study, the effects of alveolin efficiency (Alv<sup>−/−</sup>) at the organism level were investigated using the medaka, Oryzias latipes. The Alv<sup>−/−</sup> fertilized eggs were mechanically fragile; however, they developed normally and left offspring as long as they were carefully handled before hatching. A mechanical press test showed that the Alv<sup>−/−</sup> fertilized eggs were six times more fragile than the wild-type eggs. They were 35% larger owing to the enlarged PVS, 34% thinner, and permeable to even 10 kDa FITC-dextran. These results are consistent with the transmission electron microscopy observation that the periphery of the inner layers was highly porous in the Alv<sup>−/−</sup> chorion. In chorion hardening, the alveolin-mediated processing of ZPB and the transglutaminase (TGase)-mediated crosslinking of chorion components are the key steps. This study was the first to show that alveolin also processed TGase concomitantly with ZPB, which greatly facilitated the crosslinking. Thus, alveolin was concluded to be the primary trigger for chorion hardening in vivo. Furthermore, fertilization in a balanced salt solution could partially improve the impaired chorion hardening of the Alv<sup>−/−</sup> eggs fertilized in water, probably through an alveolin-independent mechanism.

    DOI: 10.3390/biom13010146

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  16. A novel C-domain-dependent inhibition of the rainbow trout CMP-sialic acid synthetase activity by CMP-deaminoneuraminic acid Open Access

    Wu D., Gilormini P.A., Toda S., Biot C., Lion C., Guérardel Y., Sato C., Kitajima K.

    Biochemical and Biophysical Research Communications   Vol. 617 ( Pt 1 ) page: 16 - 21   2022.8

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    The CMP-sialic acid synthetase (CSS) activates free sialic acid (Sia) to CMP-Sia using CTP, and is prerequisite for the sialylation of cell surface glycoconjugates. The vertebrate CSS consists of two domains, a catalytic N-domain and a non-catalytic C-domain. Although the C-domain is not required for the CSS enzyme to synthesize CMP-Sia, its involvement in the catalytic activity remains unknown. First, the real-time monitoring of CSS-catalyzed reaction was performed by <sup>31</sup>P NMR using the rainbow trout CSS (rtCSS). While a rtCSS lacking the C-domain (rtCSS-N) similarly activated both deaminoneuraminic acid (Kdn) and N-acetylneuraminic acid (Neu5Ac), the full-length rtCSS (rtCSS-FL) did not activate Kdn as efficiently as Neu5Ac. These results suggest that the C-domain of rtCSS affects the enzymatic activity, when Kdn was used as a substrate. Second, the enzymatic activity of rtCSS-FL and rtCSS-N was measured under various concentrations of CMP-Kdn. Inhibition by CMP-Kdn was observed only for rtCSS-FL, but not for rtCSS-N, suggesting that the inhibition was C-domain-dependent. Third, the inhibitory effect of CMP-Kdn was also investigated using the mouse CSS (mCSS). However, no inhibition was observed with mCSS even at high concentrations of CMP-Kdn. Taken together, the data demonstrated that the C-domain is involved in the CMP-Kdn-dependent inhibition of rtCSS, which is a novel regulation of the Sia metabolism in rainbow trout.

    DOI: 10.1016/j.bbrc.2022.05.031

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  17. Sulfation of sialic acid is ubiquitous and essential for vertebrate development Open Access

    Ertunc, N; Phitak, T; Wu, D; Fujita, H; Hane, M; Sato, C; Kitajima, K

    SCIENTIFIC REPORTS   Vol. 12 ( 1 ) page: 12496   2022.7

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    Glycosylation of proteins and lipids occurs in vertebrates, usually terminating with sialylation, which regulates the physicochemical and biological properties of these glycoconjugates. Although less commonly known, sialic acid residues also undergo various modifications, such as acetylation, methylation, and sulfation. However, except for acetylation, the enzymes or functions of the other modification processes are unknown. To the best of our knowledge, this study is the first to demonstrate the ubiquitous occurrence of sulfated sialic acids and two genes encoding the sialate: O-sulfotransferases 1 and 2 in vertebrates. These two enzymes showed about 50% amino acid sequence identity, and appeared to be complementary to each other in acceptor substrate preferences. Gene targeting experiments showed that the deficiency of these genes was lethal for medaka fish during young fry development and accompanied by different phenotypes. Thus, the sulfation of sialic acids is essential for the vertebrate development.

    DOI: 10.1038/s41598-022-15143-4

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  18. Theα 2,8-sialyltransferase 6 (St8sia6) localizes in the ER and enhances the anchorage-independent cell growth in cancer Open Access

    Hatanaka, R; Araki, E; Hane, M; Go, S; Wu, D; Kitajima, K; Sato, C

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   Vol. 608   page: 52 - 58   2022.6

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    Sialylation, the final stage of post-translational modification of proteins, is achieved in the Golgi apparatus and is related to the malignant phenotype of cancer. Disialylation of ganglioside (GD3) by St8sia1 and polysialylation by St8sia2 and 4 have been shown to be related to malignant phenotypes; however, di/oligosialylation by St8sia6 is still unknown. In this study, we analyzed the malignant phenotype of St8sia6 and found that upregulation of St8sia6 in melanoma B16 cells increased anchorage-independent cell growth, which was not due to sialic acid cleavage by a sialidase. Moreover, unlike other sialyltransferases, St8sia6 localized to the endoplasmic reticulum (ER). We found that the localization to the Golgi apparatus could be regulated by swapping experiments using St8sia2; however, the malignant phenotype did not change. These data demonstrate that the enhancement of anchorage-independent cell growth by St8sia6 is not due to its localization of ER, but is due to the expression of the protein itself.

    DOI: 10.1016/j.bbrc.2022.03.146

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  19. Polysialylation in a DISC1 Mutant Mouse Open Access

    Takahashi, Y; Abe, C; Hane, M; Wu, D; Kitajima, K; Sato, C

    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES   Vol. 23 ( 9 )   2022.5

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    Schizophrenia is a serious psychiatric disorder that affects the social life of patients. Psychiatric disorders are caused by a complex combination of genetic (G) and environmental (E) factors. Polysialylation represents a unique posttranslational modification of a protein, and such changes in neural cell adhesion molecules (NCAMs) have been reported in postmortem brains from patients with psychiatric disorders. To understand the G × E effect on polysialylated NCAM expression, in this study, we performed precise measurements of polySia and NCAM using a disrupted-in-schizophrenia 1 (DISC1)-mutant mouse (G), a mouse model of schizophrenia, under acute stress conditions (E). This is the first study to reveal a lower number and smaller length of polySia in the suprachiasmatic nucleus of DISC1 mutants relative to those in wild-type (WT) mice. In addition, an analysis of polySia and NCAM responses to acute stress in five brain regions (olfactory bulb, prefrontal cortex, suprachiasmatic nucleus, amygdala, and hippocampus) revealed that the pattern of changes in these responses in WT mice and DISC1 mutants differed by region. These differences could indicate the vulnerability of DISC1 mutants to stress.

    DOI: 10.3390/ijms23095207

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  20. A point-mutation in the C-domain of CMP-sialic acid synthetase leads to lethality of medaka due to protein insolubility Open Access

    Wu, D; Arakawa, H; Fujita, A; Hashimoto, H; Hibi, M; Naruse, K; Kamei, Y; Sato, C; Kitajima, K

    SCIENTIFIC REPORTS   Vol. 11 ( 1 ) page: 23211   2021.12

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    Vertebrate CMP-sialic acid synthetase (CSS), which catalyzes the synthesis of CMP-sialic acid (CMP-Sia), consists of a 28 kDa-N-domain and a 20 kDa-C-domain. The N-domain is known to be a catalytic domain; however, the significance of the C-domain still remains unknown. To elucidate the function of the C-domain at the organism level, we screened the medaka TILLING library and obtained medaka with non-synonymous mutations (t911a), or single amino acid substitutions of CSS, L304Q, in the C-domain. Prominently, most L304Q medaka was lethal within 19 days post-fertilization (dpf). L304Q young fry displayed free Sia accumulation, and impairment of sialylation, up to 8 dpf. At 8 dpf, a marked abnormality in ventricular contraction and skeletal myogenesis was observed. To gain insight into the mechanism of L304Q-induced abnormalities, L304Q was biochemically characterized. Although bacterially expressed soluble L304Q and WT showed the similar V<inf>max</inf>/K<inf>m</inf> values, very few soluble L304Q was detected when expressed in CHO cells in sharp contrast to the WT. Additionally, the thermostability of various mutations of L304 greatly decreased, except for WT and L304I. These results suggest that L304 is important for the stability of CSS, and that an appropriate level of expression of soluble CSS is significant for animal survival.

    DOI: 10.1038/s41598-021-01715-3

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Books 3

  1. Genetic Modification: Small Fish Species

    Wu D., Sato C., Kitajima K.

    Glycoscience A Global Roadmap 2025 from Japan Insights from the Japan Consortium for Glycobiology and Glycotechnology Jcgg  2026.1  ( ISBN:9789819573851, 9789819573868

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    Fish belong to vertebrates like human, and small fish like zebrafish and medaka (Fig. 42.1) are often used as model organisms for basic biology such as developmental biology and genetics, as well as for medical sciences related to human diseases [1, 2]. The advantages of small fish reside in the ease of genetic manipulation and the availability of a wide range of strains, including wild, mutant, transgenic, target induced local lesion in genome (TILLING) strains, and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9) strains. In Japan, the collection, preservation, and provision of small fish species are being carried out by the National BioResource Project. In the field of glycoscience, the importance of glycolipids and glycoproteins in fertilization, development, and neurogenesis is being well studied [3, 4]. On the other hand, the usefulness of small fish as model organisms for diseases such as muscular dystrophy is also recognized [5]. While zebrafish research is numerous worldwide, an increasing number of research using medaka which has been established as an experimental animal in Japan are also prominent. Thus, it is believed that the importance of both fish species as research targets in the field of basic biology and medical sciences of glycans will be more recognized in the future.

    DOI: 10.1007/978-981-95-7386-8_42

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  2. Biological Significance of C-Domain of the Vertebrate CMP-Sialic Acid Synthetases

    Wu D., Sato C., Kitajima K.

    Advances in Experimental Medicine and Biology  2026 

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    The CMP-sialic acid synthetase (CSS/CMAS) is essential for the expression of sialic acid (Sia)-containing glycoconjugates on the cell surface and the extracellular space, as it activates free sialic acid (Sia) to CMP-Sia, the sole donor substrate for all kinds of sialytransferases. The vertebrate CSS comprises two domains: the N-terminal domain (N-domain/CSS-N) and the C-terminal domain (C-domain/CSS-C). While CSS-N is highly conserved among most organisms, CSS-C is found only in vertebrates and certain types of bacteria. To investigate the biological significance of CSS-C in vertebrate CSS, its X-ray structure was determined at a resolution of 1.9 Å. CSS-C forms a tetramer and superimposes well with phosphatases of the haloacid dehalogenase superfamily, although it lacks the phosphatase activity due to the blockage of the active-site entrance. Instead, CSS-C functions as a structural platform for the quaternary organization of the CSS. To explore the biological role of CSS-C at the organism level, a medaka mutant strain whose CSS contains a single amino acid substitution, L304Q, was generated. This reverse genetic study revealed that L304 is critical for the CSS stability and that maintaining appropriate levels of soluble CSS expression is essential for animal survival. To obtain further insight into the involvement of CSS-C in regulating enzymatic activity, the effect of CMP-Kdn on the rainbow trout CSS (rtCSS) activity was examined. It was demonstrated that CSS-C regulates Kdn metabolism in rainbow trout, as the activity was inhibited by CMP-Kdn in a C-domain-dependent manner. Taken together, CSS-C not only influences the physicochemical properties but also plays a key role in regulating its enzymatic activity.

    DOI: 10.1007/978-3-032-04153-1_12

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  3. In: GlycoPOD (Japan Consortium for Glycobiology and Glycotechnology, Ed.)

    Di Wu, Ken Kitajima.( Role: Contributor ,  Enzyme assay of sialic acid 9-phosphate synthase (SPS))

    Tokyo: Springer Japan.  2023 

KAKENHI (Grants-in-Aid for Scientific Research) 6

  1. 精神疾患に関わる血中新奇ポリシアル酸の構造、起源および機能解析

    Grant number:25K02224  2025.4 - 2029.3

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    佐藤 ちひろ, 呉 迪, 羽根 正弥, 北爪 しのぶ, 山口 芳樹

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    Authorship:Coinvestigator(s) 

    ポリシアル酸(polySia)は脳に偏在し、精神疾患に関わることが示されている。これまでポリシアル酸の解析は脳が中心で、血中の微少ポリシアル酸の解析は殆ど行われて来なかった。従って血中ポリシアル酸はどこから来るのか、血中ポリシアル酸の構造はどのようになっているのか、血中ポリシアル酸の機能は何なのか?という根本的な学術的な問いが未だ解かれていない。本研究はこれまで不明だった血中ポリシアル酸の由来、構造、機能を明らかにすることを目的としている。本研究を遂行することにより、新規な血中ポリシアル酸の基盤的な知識の獲得のみならず、バイオマーカーをはじめとする医療応用にも大きく貢献する。

  2. Frequent occurrence of new sialic acid binding region in SIGLECs and demonstration of the new regulatory system

    Grant number:23K21291  2024.4 - 2025.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    Sato Chihiro

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    Authorship:Coinvestigator(s) 

    Siglec, a sialic acid-binding lectin involved in immune regulation, is an important immune receptor that distinguish self and non-self. However, many aspects of its ligand recognition remain unclear. The objective of this study is to elucidate a novel ligand recognition mechanism. Siglec possesses a well-known sialic acid-binding site (Site 1) and a novel sialic acid-binding site (Site 2) identified in Siglec-7 by our group.In this study, we demonstrated the presence of Site2 in other Siglecs, identified natural ligands and their biosynthetic enzymes, and elucidated the regulatory mechanism mediated by Site1 and Site2.

  3. Discovery and biological significance of sialic acid-specific sulfotransferases in vertebrate

    Grant number:23K23523  2024.4 - 2025.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    Kitajima Ken

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    Authorship:Coinvestigator(s) 

    In this study, we focused on two kinds of sialic acid sulfotransferase genes (SulT-Sia1 and SulT-Sia2), which were discovered for the first time in the world, to elucidate the function of sialic acid sulfation. First, we found that hatching was delayed for 1 to 2 days in the two types of knockout (KO) medaka, because of the loss of the egg membrane layer structure. For the two types of KO mice, their phenotypes were not identified yet in morphological features. We are now performing behavioral experiments. Second, we searched for novel sialic acid sulfotransferases other than the above two enzymes, focusing on organs where sulfated sialic acid was still detected in SulT-Sia1/Sia2 KO medaka and mice; however, we were unable to find any enzymes in question so far.

  4. 脊椎動物におけるシアル酸特異的硫酸転移酵素群の発見とその生物学的重要性の証明

    Grant number:22H02256  2022.4 - 2025.3

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    北島 健, 佐藤 ちひろ, 呉 迪, 羽根 正弥

  5. 免疫細胞レクチンシグレックの新規リガンド結合部位の証明と新しい免疫制御機構の解明

    Grant number:21H02425  2021.4 - 2025.3

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    佐藤 ちひろ, 呉 迪, 田中 浩士, 長江 雅倫, 羽根 正弥

  6. Demonstration of the vertebrate CMP-sialic acid synthetase as a novel regulatory protein of neural cell apoptosis

    Grant number:21K15040  2021.4 - 2023.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Early-Career Scientists

    Wu Di

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    Authorship:Principal investigator 

    Grant amount:\4680000 ( Direct Cost: \3600000 、 Indirect Cost:\1080000 )

    CMP-sialic acid synthetase (CSS) is a key enzyme in sialic acid metabolism. However, medaka with a point mutation in the N-domain of CSS (named MuN) were lethal at early developmental stage due to cardiomyopathy and abnormal apoptosis in neural cells without affecting the sialylation state. To clarify the mechanism, we studied on the interacting proteins of CSS in mouse neuroblastoma cell line (Neuro2A). As a result, various interacting proteins of CSS in Neuro2A cell were confirmed, including Fragile X related protein (FXRP), which is the key protein caused apoptosis in MuN medaka.

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