論文 - TAMA Florence
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Modeling Conformational Transitions of Biomolecules from Atomic Force Microscopy Images using Normal Mode Analysis. 査読有り 国際誌
Wu X, Miyashita O, Tama F
The journal of physical chemistry. B 2024年9月
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Data Science for Integrated Dynamic Structural Biology-the 21st IUPAB Congress session summary commentary 招待有り 査読有り 国際共著 国際誌
BIOPHYSICAL REVIEWS 2024年9月
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Stereochemistry-Dependent Labeling of Organelles with a Near-Infrared-Emissive Phosphorus-Bridged Rhodamine Dye in Live-Cell Imaging. 査読有り 国際誌
Wu Q, Taki M, Tanaka Y, Kesherwani M, Phung QM, Enoki S, Okada Y, Tama F, Yamaguchi S
Angewandte Chemie (International ed. in English) 頁： e202400711 2024年2月
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Structure determination using high-order spatial correlations in single-particle X-ray scattering 査読有り
Wenyang Zhao, Osamu Miyashita, Miki Nakano, Florence Tama
IUCrJ 11 巻 ( 1 ) 頁： 92 - 108 2024年1月
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Advancing cryo-electron microscopy data analysis through accelerated simulation-based flexible fitting approaches. 招待有り 査読有り 国際誌
Miyashita O, Tama F
Current opinion in structural biology 82 巻 頁： 102653 2023年7月
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MDSPACE: Extracting Continuous Conformational Landscapes from Cryo-EM Single Particle Datasets Using 3D-to-2D Flexible Fitting based on Molecular Dynamics Simulation. 査読有り 国際共著 国際誌
Vuillemot R, Mirzaei A, Harastani M, Hamitouche I, Fréchin L, Klaholz BP, Miyashita O, Tama F, Rouiller I, Jonic S
Journal of molecular biology 435 巻 ( 9 ) 頁： 167951 2023年5月
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Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction 査読有り 国際誌
Nakano Miki, Miyashita Osamu, Tama Florence
STRUCTURAL DYNAMICS-US 10 巻 ( 2 ) 2023年3月
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Composable Workflow for Accelerating Neural Architecture Search Using In Situ Analytics for Protein Classification 査読有り 国際共著 国際誌
Charming, G; Patel, R; Olaya, P; Rorabaugh, AK; Miyashita, O; Caino-Lores, S; Schuman, C; Tama, F; Taufer, M
PROCEEDINGS OF THE 52ND INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING, ICPP 2023 頁： 756 - 765 2023年
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SWEET13 transport of sucrose, but not gibberellin, restores male fertility in Arabidopsis sweet13;14. 査読有り 国際誌
Isoda R, Palmai Z, Yoshinari A, Chen LQ, Tama F, Frommer WB, Nakamura M
Proceedings of the National Academy of Sciences of the United States of America 119 巻 ( 42 ) 頁： e2207558119 2022年10月
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CRY2 isoform selectivity of a circadian clock modulator with antiglioblastoma efficacy. 査読有り 国際誌
Miller S, Kesherwani M, Chan P, Nagai Y, Yagi M, Cope J, Tama F, Kay SA, Hirota T
Proceedings of the National Academy of Sciences of the United States of America 119 巻 ( 40 ) 頁： e2203936119 2022年10月
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Three-dimensional structure determination of gold nanotriangles in solution using X-ray free-electron laser single-particle analysis 査読有り 国際誌
Miki Nakano, Osamu Miyashita, Yasumasa Joti, Akihiro Suzuki, Hideyuki Mitomo, Yoshiya Niida, Ying Yang, Hirokatsu Yumoto, Takahisa Koyama, Kensuke Tono, Haruhiko Ohashi, Makina Yabashi, Tetsuya Ishikawa, YOSHITAKA BESSHO, Kuniharu Ijiro, Yoshinori Nishino, Florence Tama
Optica 9 巻 ( 7 ) 頁： 776 - 784 2022年7月
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High-resolution structure of phosphoketolase from Bifidobacterium longum determined by cryo-EM single-particle analysis. 査読有り 国際誌
Nakata K, Miyazaki N, Yamaguchi H, Hirose M, Kashiwagi T, Kutumbarao NHV, Miyashita O, Tama F, Miyano H, Mizukoshi T, Iwasaki K
Journal of structural biology 214 巻 ( 2 ) 頁： 107842 - 107842 2022年6月
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Light-Control over Casein Kinase 1δ Activity with Photopharmacology: A Clear Case for Arylazopyrazole-Based Inhibitors. 査読有り 国際誌
Schulte AM, Kolarski D, Sundaram V, Srivastava A, Tama F, Feringa BL, Szymanski W
International journal of molecular sciences 23 巻 ( 10 ) 2022年5月
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NMMD: Efficient Cryo-EM Flexible Fitting Based on Simultaneous Normal Mode and Molecular Dynamics atomic displacements. 査読有り 国際誌
Vuillemot R, Miyashita O, Tama F, Rouiller I, Jonic S
Journal of molecular biology 434 巻 ( 7 ) 頁： 167483 - 167483 2022年4月
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Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids. 査読有り 国際誌
Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A
Science signaling 15 巻 ( 720 ) 頁： eabg6941 2022年2月
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A hybrid approach to study large conformational transitions of biomolecules from single particle XFEL diffraction data. 査読有り 国際誌
Asi H, Dasgupta B, Nagai T, Miyashita O, Tama F
Frontiers in molecular biosciences 9 巻 頁： 913860 2022年
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A Methodology to Generate Efficient Neural Networks for Classification of Scientific Datasets 査読有り 国際誌
Patel Ria, Rorabaugh Ariel Keller, Olaya Paula, Caino-Lores Silvina, Channing Georgia, Schuman Catherine, Miyashita Osamu, Tama Florence, Taufer Michela
2022 IEEE 18TH INTERNATIONAL CONFERENCE ON E-SCIENCE (ESCIENCE 2022) 頁： 389 - 390 2022年
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Identifying Structural Properties of Proteins from X-ray Free Electron Laser Diffraction Patterns 査読有り 国際誌
Olaya Paula, Caino-Lores Silvina, Lama Vanessa, Patel Ria, Rorabaugh Ariel Keller, Miyashita Osamu, Tama Florence, Taufer Michela
2022 IEEE 18TH INTERNATIONAL CONFERENCE ON E-SCIENCE (ESCIENCE 2022) 頁： 21 - 31 2022年
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Protocol for Retrieving Three-Dimensional Biological Shapes for a Few XFEL Single-Particle Diffraction Patterns. 査読有り 国際誌
Tiwari SP, Tama F, Miyashita O
Journal of chemical information and modeling 61 巻 ( 8 ) 頁： 4108 - 4119 2021年8月
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Integrative modeling to characterize structure and dynamics of biomolecules 国際誌
Tama Florence
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 77 巻 頁： C53 - C53 2021年8月