Faculty Profiles - TAKEDA, Shin

Papers - TAKEDA, Shin

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Basic design of artificial membrane-less organelles using condensation-prone proteins in plant cells. Reviewed

Yoshito Koja, Takuya Arakawa, Yusuke Yoritaka, Yu Joshima, Hazuki Kobayashi, Kenta Toda, Shin Takeda

Communications Biology Vol. 7 page： 1396 2024.10

RICE SALT SENSITIVE 3 forms a ternary complex with JAZ and class-C bHLH factors, and regulates JA-induced gene expression and root cell elongation. Reviewed

Toda, Y., Tanaka, M., Ogawa, D., Kurata, K., Kurotani, K., Habu, Y., Ando, T., Sugimoto, K., Mitsuda, N., Katoh, E., Abe, K., Miyao, A., Hirochika, H., Hattori, T., and Takeda, S.

Plant Cell Vol. 25 page： 1709–1725 2013

RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice Reviewed

Ogawa, D., Abe, K., Miyao, A., Kojima, M., Sakakibara, H., Mizutani, M. Morita, H., Toda, Y. Hobo, T. Sato, Y., Hattori, T., Hirochika, H. and Takeda, S.

Nature Communications Vol. 2 ( 278 ) 2011.4

Authorship：Lead author,　Corresponding author Language：English Publishing type：Research paper (scientific journal)

Plant growth and development are sustained by continuous cell division in the meristems, which is perturbed by various environmental stresses. For the maintenance of meristematic functions, it is essential that cell division be coordinated with cell differentiation. However, it is unknown how the proliferative activities of the meristems and the coordination between cell division and differentiation are maintained under stressful conditions. Here, we report that a rice protein, RSS1, whose stability is controlled by cell cycle phases, contributes to the vigour of meristematic cells and viability under salinity conditions. These effects of RSS1 are exerted by regulating the G1-S transition, possibly through an interaction of RSS1 with protein phosphatase 1, and are mediated by the phytohormone, cytokinin. RSS1 is conserved widely in plant lineages, except eudicots, suggesting that RSS1-dependent mechanisms might have been adopted in specific lineages during the evolutionary radiation of angiosperms.

DOI： 10.1038/ncomms1279

Genetic approaches to crop improvement: responding to environmental and population changes. Invited Reviewed

Takeda, S. and Matsuoka, M.

Nature Review Genetics Vol. 9 page： 444-457 2008

Authorship：Lead author,　Corresponding author Language：English

Crop production is threatened by global climate change, and recent demands for crops to produce bio-fuels have started to affect the worldwide supply of some of
the most important foods. How can we support a growing human population in such circumstances? One potential solution is the improvement of crops to increase yield from both irrigated and non-irrigated lands, and to create novel varieties that are more tolerant to environmental stresses. Recent progress has been made in the isolation and functional analyses ofIgenes controlling yield and tolerance to abiotic stresses. In addition, promisingnew methods are being developed for identifying additional genes and variants of interest and putting these to practical use in crop improvement.

DOI： https://doi.org/10.1038/nrg2342

Enhancing specimen preparation for transmission electron microscopy: Trypan Blue staining and low-melting-point agar embedding for ultra-thin cell sections. Reviewed

Ishii, N., Koja, Y., Noguchi, K., Yohda, M. and Takeda, S.

Journal of Bioscience and Bioengineering Vol. 139 ( 5 ) page： 392 - 398 2025.3

Formation of subcellular compartments by condensation-prone protein OsJAZ2 in Oryza sativa and Nicotiana benthamiana leaf cells Reviewed

Koja, Y., Joshima Y., Yoritaka, Y., Arakawa,T., Go, H., Hakamata, N., Kaseda, H., Hattori, T. and Takeda, S.

Plant Cell Reports Vol. 42 page： 269 - 286 2023.2

High-resolution spatiotemporal transcriptome analyses during cellularization of rice endosperm unveil the earliest gene regulation critical for aleurone and starchy endosperm cell fate specification Reviewed

Takafuji, Y., Shimizu-Sato, S., Nhung Ta, K., Suzuki, T., Nosaka-Takahashi, M., Oiwa, T., Kimura, W., Katoh, H., Fukai, M., Takeda, S.*, Sato, Y.*, and Hattori, T*.

Journal of Plant Research Vol. 134 page： 1061 - 1081 2021.7

Acetic-acid-induced jasmonate signaling in root enhances drought avoidance in rice Reviewed

Ogawa, D., Suzuki, Y., Yokoo, T., Katoh, E., Teruya, M., Muramatsu, M., Ma, J. F., Yoshida, Y., Isaji, S., Ogo, Y., Miyao, M., Kim, J.-M., Kojima, M., Takebayashi, Y., Sakakibara, H., Takeda, S., Okada, K., Mori, N., Seki, M. and Habu Y.

Scientific Reports 2021.3

The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance Reviewed International coauthorship

Mahjoubi Habib, Tamari Yutaka, Takeda Shin, Bouchabke-Coussa Oumaya, Hanin Moez, Herzog Etienne, Schmit Anne-Catherine, Chaboute Marie-Edith, Ebel Chantal

PLANT CELL REPORTS Vol. 37 ( 12 ) page： 1625-1637 2018.12

Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development Reviewed

Hara, T., Katoh, H., Ogawa, D., Kagaya, Y., Sato, Y., Kitano, H., Nagato, Y., Ishikawa, R., Ono, A., Kinoshita, T., Takeda, S. and Hattori, T.

page： in press 2015

Elevated levels of CYP94 family gene expression alleviate the jasmonate response and enhance salt tolerance in rice Reviewed

Kurotani, K., Hayashi, K., Hatanaka, S., Toda, Y., Ogawa, D., Ichikawa, H., Ishimaru, Y., Tashita, R., Suzuki, T., Ueda, M., Hattori, T. and Takeda S.

Plant Cell Physiol page： in press 2015

The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10 Reviewed

Yoshii, M., Yamamoto, A., Kagaya, Y., Takeda S. and Hattori, T.

Plant Signaling & Behavior page： in press 2015

Stress-tolerance profiling of a collection of extant salt-tolerant rice varieties and transgenic plants overexpressing abiotic stress tolerance genes Reviewed

Kurotani, K., Yamanaka, K., Toda, Y., Ogawa, D., Tanaka, M., Kozawa, H., Nakamura, H., Hakata, M., Ichikawa, H., Hattori, T. and Takeda S.

Plant Cell Physiol. 2015

Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice Reviewed

Kurotani, K., Hattori, T. and Takeda S

Plant Signaling & Behavior Vol. 10 page： e1046667 2015

Overexpression of the JAZ factors with mutated Jas domains causes pleiotropic defects in rice spikelet development Reviewed

Hori, Y., Kurotani, K., Toda, Y., Hattori, T., and Takeda, S.

Plant Signaling & Behavior Vol. 9 page： e970414 2014.12

BRU1 maintains configuration of the euchromatic subchromosomal domain in the nucleus of Arabidopsis. Reviewed

Ohno, Y., Nishimura, T., Hattori, T., and Takeda, S.

Vol. 32 page： 19-27. 2014

Life and death under salt stress: same players, different timing? Reviewed International coauthorship

Ismail, A., Takeda, S and Nick, P.

J. Exp. Bot. Vol. 65 page： 2963 - 2979 2014

Cell-by-cell developmental transition from embryo to postgermination phase revealed by heterochronic gene expression and ER-body formation in Arabidopsis leafy cotyledon mutants Reviewed

Yamamoto, A., Yoshii, M., Murase, S., Fujita, M., Kurata, N., Hobo, T., Kagaya, Y., Takeda, S. and Hattori, T.

Plant Cell Physiol. Vol. 55 page： 2112-2125 2014

RICE SALT SENSITIVE3 binding to bHLH and JAZ factors mediates control of cell wall plasticity in the root apex. Reviewed

Toda, Y., Yoshida, M., Hattori, T., and Takeda, S.

Plant Signaling & Behavior. Vol. 8 page： e26256 2013

alpha-tubulin is rapidly phosphorylated in response to hyperosmotic stress in rice and Arabidopsis. Reviewed

Ban, Y., Kobayashi, Y., Hara, T., Hamada, T., Hashimoto, T., Takeda, S. and Hattori. T.

Plant Cell Physiol. Vol. 54 page： 848-858. 2013

Molecular characterization of the rice protein RSS1 required for meristematic activity under stressful conditions. Reviewed

Ogawa, D., Morita, H., Hattori, T., and Takeda, S.

Plant Physiol. Biochem. Vol. 61 page： 54-60 2012

Pleiotropic Effects of the Wheat Dehydrin DHN-5 on Stress Responses in Arabidopsis Reviewed International coauthorship

Brini, F. Yamamoto, A., Jlaeil, L., Takeda, S., Hobo, T., Dinh, H.Q., Hattori, T., Masmoudi, K. and Hanin, M.

Plant Cell Physiol Vol. 52 page： 676-688 2011.4

Ectopic gene expression and organogenesis in Arabidopsis mutants missing BRU1 required for genome maintenance Reviewed International coauthorship

Ohno, Y., Narangajavana, J., Yamamoto, A., Hattori, T., Kagaya,Y., Paszkowski,J., Gruissem,W., Hennig, L., and Takeda, S.

Genetics Vol. 189 page： 83-95 2011

Plant dehydrins and stress tolerance: versatile proteins for complex mechanisms Reviewed International coauthorship

Hanin, M., Brini, F., Ebel, C., Toda, Y., Takeda, S. and Masmoudi, K.

Plant Signaling & Behavior Vol. 6 page： 1503 - 1509 2011

Diverse roles and mechanisms of gene regulation by the Arabidopsis seed maturation master regulator FUS3 revealed by microarray analysis. Reviewed

Yamamoto, A., Kagaya, Y., Usui, H., Hobo, T, Takeda, S. and Hattori, T.

Plant Cell Physiol. Vol. in press 2010

Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors. Reviewed

Yamamoto, A., Kagaya, Y., Toyoshima, R., Kagaya, M., Takeda, S. and Hattori, T.

Plant Journal Vol. 58 page： 843–856 2009

アブシジン酸受容体

服部束穂、伴佳典、加賀谷安章、武田真

植物の生長調節 Vol. 43 page： 123-134 2008

DNA methylation and epigenetic inheritance during plant gametogenesis Invited Reviewed International coauthorship

Takeda, S. and Paszkowski, J.

Chromosoma Vol. 115 page： 27-35 2006

Chromatin assembly factor 1 ensures the stable maintenance of silent chromatin states in Arabidopsis Reviewed International coauthorship

Ono, T., Kaya H., Takeda, S., Abe, M., Ogawa, Y., Kato, M., Kakutani, T., Mittelsten Scheid, O., Araki, T. and Shibahara, K.

Genes Cells Vol. 11 page： 153-162 2006

An overview of gibberellin metabolism enzyme genes and their related mutants in rice Reviewed

Sakamoto, T., Miura, K., Itoh, H., Tatsumi, T., Ueguchi-Tanaka, M., Ishiyama, K., Kobayashi, M., Agrawal, G.K., Takeda, S., Abe, K., Miyao, A., Hirochika, H., Kitano, H., Ashikari, M. and Matsuoka, M.

Plant Physiol. Vol. 134 page： 1642-1653 2004

BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis Invited Reviewed International coauthorship

Takeda, S., Tadele, Z., Hofmann, I., Probst, A.V., Angelis, K.J., Kaya, H., Araki, T., Mengiste, T., Mittelsten Scheid, O., Shibahara, K., Scheel, D. and Paszkowski, J.

Genes & Dev. Vol. 18 page： 782-793 2004

Authorship：Lead author Language：English Publishing type：Research paper (scientific journal)

DNA repair associated with DNA replication is important for the conservation of genomic sequence information, whereas reconstitution of chromatin after replication sustains epigenetic information. We have isolated and characterized mutations in the BRU1 gene of Arabidopsis that suggest a novel link between these underlying maintenance mechanisms. Bru1 plants are highly sensitive to genotoxic stress and show stochastic release of transcriptional gene silencing and show increased intrachromosomal homologous recombination and constitutively activated expression of AtPARP-2, the induction of which is associated with elevated DNA damage. Bru1 mutations affect the stability of heterochromatin organization without changing in genome-wide DNA methylation. BRU1 encodes a novel nuclear protein with two predicted protein-protein interaction domains. Comparison of bru1 with mutations in genes encoding subunits of CAF-1, the condensin complex, or MRE11 indicates cooperative roles in the replication and stabilization of chromatin structure, providing a novel link between chromatin replication, epigenetic inheritance, S-phase DNA damage checkpoints, and the regulation of meristem development.

DOI： https://doi.org/10.1101/gad.295404

Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome Reviewed

Vol. 15 page： 1771-1780 2003

Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2 Reviewed

Sugimoto, K., Takeda, S. and Hirochika, H.

Plant Journal Vol. 36 page： 550-564 2003

Linear DNA intermediates of the Tto1 retrotransposon in Gag particles accumulated in stressed tobacco and Arabidopsis thaliana Reviewed

Takeda, S., Sugimoto, K., Kakutani, T. and Hirochika, H.

Plant Journal Vol. 28 page： 307-317 2001

MYB-related transcription factor NtMYB2 induced by wounding and elicitors is a regulator of the tobacco retrotransposon Tto1 and defense-related genes Reviewed

Sugimoto, K., Takeda, S., and Hirochika, H.

Plant Cell Vol. 12 page： 2511-2527 2000

トランスポゾンを利用した植物遺伝子の機能解析

武田真、宮尾安藝雄、廣近洋彦

育種学研究 Vol. 1 page： 243-248 1999

A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors Reviewed

Takeda, S., Sugimoto, K., Otsuki, H. and Hirochika, H.

Plant Journal Vol. 18 page： 383-393 1999

Transcriptional activation of the tobacco retrotransposon Tto1 by wounding and methyl jasmonate Reviewed

Takeda, S., Sugimoto, K., Otsuki, H. and Hirochika, H.

Plant Mol. Biol. Vol. 36 page： 365-376 1998

Autonomous transposition of the tobacco retrotransposon Tto1 in Rice Reviewed

Hirochika, H., Otsuki, H., Yoshikawa, M., Otsuki, Y., Sugimoto, K. and Takeda, S.

Plant Cell Vol. 8 page： 725-734 1996

Spatial patterns of sucrose-inducible and polygalacturonic acid-inducible expression of genes that encode sporamin and b-amylase in sweet potato Reviewed

Takeda, S., Kowyama, Y., Takeuchi, Y., Matsuoka, K., Nishimura, M. and Nakamura, K.

Plant Cell Physiol. Vol. 36 page： 321-333 1995

Inhibitors of protein phosphatases 1 and 2A block the sugar-inducible gene expression in plants Reviewed

Takeda, S., Mano, S., Ohto, M. and Nakamura, K.

Plant Physiol. Vol. 106 page： 567-574 1994

The presequence of a precursor to the d-subunit of sweet potato mitochondrial F1ATPase is not sufficient for the transport of b-glucuronidase (GUS) into mitochondria of tobacco, rice and yeast cells Reviewed

Kimura, T., Takeda, S., Kyozuka, J., Asahi, T., Shimamoto, K. and Nakamura, K.

Plant Cell Physiol. Vol. 34 page： 345-355 1993

Primary structure of a precursor for the d-subunit of sweet potato mitochondrial F1ATPase deduced from full-length cDNA Reviewed

Kimura, T., Takeda, S., Asahi, T. and Nakamura, K

J. Biol. Chem. Vol. 265 page： 6079-6085 1990

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Papers - TAKEDA, Shin