Faculty Profiles - TAKEDA, Shin

Papers - TAKEDA, Shin

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Basic design of artificial membrane-less organelles using condensation-prone proteins in plant cells. Reviewed

Yoshito Koja, Takuya Arakawa, Yusuke Yoritaka, Yu Joshima, Hazuki Kobayashi, Kenta Toda, Shin Takeda

Communications Biology Vol. 7 page： 1396 2024.10

RICE SALT SENSITIVE 3 forms a ternary complex with JAZ and class-C bHLH factors, and regulates JA-induced gene expression and root cell elongation. Reviewed

Toda, Y., Tanaka, M., Ogawa, D., Kurata, K., Kurotani, K., Habu, Y., Ando, T., Sugimoto, K., Mitsuda, N., Katoh, E., Abe, K., Miyao, A., Hirochika, H., Hattori, T., and Takeda, S.

Plant Cell Vol. 25 page： 1709–1725 2013

RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice Reviewed

Ogawa, D., Abe, K., Miyao, A., Kojima, M., Sakakibara, H., Mizutani, M. Morita, H., Toda, Y. Hobo, T. Sato, Y., Hattori, T., Hirochika, H. and Takeda, S.

Nature Communications Vol. 2 ( 278 ) 2011.4

Authorship：Lead author,　Corresponding author Language：English Publishing type：Research paper (scientific journal)

Plant growth and development are sustained by continuous cell division in the meristems, which is perturbed by various environmental stresses. For the maintenance of meristematic functions, it is essential that cell division be coordinated with cell differentiation. However, it is unknown how the proliferative activities of the meristems and the coordination between cell division and differentiation are maintained under stressful conditions. Here, we report that a rice protein, RSS1, whose stability is controlled by cell cycle phases, contributes to the vigour of meristematic cells and viability under salinity conditions. These effects of RSS1 are exerted by regulating the G1-S transition, possibly through an interaction of RSS1 with protein phosphatase 1, and are mediated by the phytohormone, cytokinin. RSS1 is conserved widely in plant lineages, except eudicots, suggesting that RSS1-dependent mechanisms might have been adopted in specific lineages during the evolutionary radiation of angiosperms.

DOI： 10.1038/ncomms1279

Genetic approaches to crop improvement: responding to environmental and population changes. Invited Reviewed

Takeda, S. and Matsuoka, M.

Nature Review Genetics Vol. 9 page： 444-457 2008

Authorship：Lead author,　Corresponding author Language：English

Crop production is threatened by global climate change, and recent demands for crops to produce bio-fuels have started to affect the worldwide supply of some of
the most important foods. How can we support a growing human population in such circumstances? One potential solution is the improvement of crops to increase yield from both irrigated and non-irrigated lands, and to create novel varieties that are more tolerant to environmental stresses. Recent progress has been made in the isolation and functional analyses ofIgenes controlling yield and tolerance to abiotic stresses. In addition, promisingnew methods are being developed for identifying additional genes and variants of interest and putting these to practical use in crop improvement.

DOI： https://doi.org/10.1038/nrg2342

Enhancing specimen preparation for transmission electron microscopy: Trypan Blue staining and low-melting-point agar embedding for ultra-thin cell sections. Reviewed

Ishii, N., Koja, Y., Noguchi, K., Yohda, M. and Takeda, S.

Journal of Bioscience and Bioengineering Vol. 139 ( 5 ) page： 392 - 398 2025.3

Formation of subcellular compartments by condensation-prone protein OsJAZ2 in Oryza sativa and Nicotiana benthamiana leaf cells Reviewed

Koja, Y., Joshima Y., Yoritaka, Y., Arakawa,T., Go, H., Hakamata, N., Kaseda, H., Hattori, T. and Takeda, S.

Plant Cell Reports Vol. 42 page： 269 - 286 2023.2

High-resolution spatiotemporal transcriptome analyses during cellularization of rice endosperm unveil the earliest gene regulation critical for aleurone and starchy endosperm cell fate specification Reviewed

Takafuji, Y., Shimizu-Sato, S., Nhung Ta, K., Suzuki, T., Nosaka-Takahashi, M., Oiwa, T., Kimura, W., Katoh, H., Fukai, M., Takeda, S.*, Sato, Y.*, and Hattori, T*.

Journal of Plant Research Vol. 134 page： 1061 - 1081 2021.7

Acetic-acid-induced jasmonate signaling in root enhances drought avoidance in rice Reviewed

Ogawa, D., Suzuki, Y., Yokoo, T., Katoh, E., Teruya, M., Muramatsu, M., Ma, J. F., Yoshida, Y., Isaji, S., Ogo, Y., Miyao, M., Kim, J.-M., Kojima, M., Takebayashi, Y., Sakakibara, H., Takeda, S., Okada, K., Mori, N., Seki, M. and Habu Y.

Scientific Reports 2021.3

The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant salt stress tolerance Reviewed International coauthorship

Mahjoubi Habib, Tamari Yutaka, Takeda Shin, Bouchabke-Coussa Oumaya, Hanin Moez, Herzog Etienne, Schmit Anne-Catherine, Chaboute Marie-Edith, Ebel Chantal

PLANT CELL REPORTS Vol. 37 ( 12 ) page： 1625-1637 2018.12

Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development Reviewed

Hara, T., Katoh, H., Ogawa, D., Kagaya, Y., Sato, Y., Kitano, H., Nagato, Y., Ishikawa, R., Ono, A., Kinoshita, T., Takeda, S. and Hattori, T.

page： in press 2015

Elevated levels of CYP94 family gene expression alleviate the jasmonate response and enhance salt tolerance in rice Reviewed

Kurotani, K., Hayashi, K., Hatanaka, S., Toda, Y., Ogawa, D., Ichikawa, H., Ishimaru, Y., Tashita, R., Suzuki, T., Ueda, M., Hattori, T. and Takeda S.

Plant Cell Physiol page： in press 2015

The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10 Reviewed

Yoshii, M., Yamamoto, A., Kagaya, Y., Takeda S. and Hattori, T.

Plant Signaling & Behavior page： in press 2015

Stress-tolerance profiling of a collection of extant salt-tolerant rice varieties and transgenic plants overexpressing abiotic stress tolerance genes Reviewed

Kurotani, K., Yamanaka, K., Toda, Y., Ogawa, D., Tanaka, M., Kozawa, H., Nakamura, H., Hakata, M., Ichikawa, H., Hattori, T. and Takeda S.

Plant Cell Physiol. 2015

Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice Reviewed

Kurotani, K., Hattori, T. and Takeda S

Plant Signaling & Behavior Vol. 10 page： e1046667 2015

Overexpression of the JAZ factors with mutated Jas domains causes pleiotropic defects in rice spikelet development Reviewed

Hori, Y., Kurotani, K., Toda, Y., Hattori, T., and Takeda, S.

Plant Signaling & Behavior Vol. 9 page： e970414 2014.12

BRU1 maintains configuration of the euchromatic subchromosomal domain in the nucleus of Arabidopsis. Reviewed

Ohno, Y., Nishimura, T., Hattori, T., and Takeda, S.

Vol. 32 page： 19-27. 2014

Life and death under salt stress: same players, different timing? Reviewed International coauthorship

Ismail, A., Takeda, S and Nick, P.

J. Exp. Bot. Vol. 65 page： 2963 - 2979 2014

Cell-by-cell developmental transition from embryo to postgermination phase revealed by heterochronic gene expression and ER-body formation in Arabidopsis leafy cotyledon mutants Reviewed

Yamamoto, A., Yoshii, M., Murase, S., Fujita, M., Kurata, N., Hobo, T., Kagaya, Y., Takeda, S. and Hattori, T.

Plant Cell Physiol. Vol. 55 page： 2112-2125 2014

RICE SALT SENSITIVE3 binding to bHLH and JAZ factors mediates control of cell wall plasticity in the root apex. Reviewed

Toda, Y., Yoshida, M., Hattori, T., and Takeda, S.

Plant Signaling & Behavior. Vol. 8 page： e26256 2013

alpha-tubulin is rapidly phosphorylated in response to hyperosmotic stress in rice and Arabidopsis. Reviewed

Ban, Y., Kobayashi, Y., Hara, T., Hamada, T., Hashimoto, T., Takeda, S. and Hattori. T.

Plant Cell Physiol. Vol. 54 page： 848-858. 2013

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Papers - TAKEDA, Shin