日本学術振興会・特別研究員（ＤＣ）

1997.10 - 1999.3

日本農学進歩賞

2006.11   財団法人農学会  

日本育種学会奨励賞

2004.3   日本育種学会  

ISPMB (The International Society for Plant Molecular Biology) Student Travel Award

1999.1   The International Society for Plant Molecular Biology  

REGULATOR OF AWN ELONGATION 3 is responsible for loss of awns during African rice domestication. Reviewed International coauthorship

Kanako Bessho-Uehara, Kengo Masuda, Diane R. Wang, Rosalyn B. Angeles-Shim, Keisuke Obara, Keisuke Nagai, Riri Murase, Shin-ichiro Aoki, Tomoyuki Furuta, Kotaro Miura, Jianzhong Wu, Yoshiyuki Yamagata, Hideshi Yasui, Michael Kantar, Atsushi Yoshimura, Takumi Kamura, Susan R. McCouch, Motoyuki Ashikari.

PNAS   Vol. 120 ( 4 ) page： e2207105120   2023.1

Designing rice panicle architecture via developmental regulatory genes

Agata Ayumi, Ashikari Motoyuki, Sato Yutaka, Kitano Hidemi, Hobo Tokunori

BREEDING SCIENCE   Vol. 73 ( 1 ) page： 86 - 94   2023

Deep Fluorescence Observation in Rice Shoots via Clearing Technology. Reviewed

Yoko Niimi, Keisuke Nagai, Motoyuki Ashikari, Yoko Mizuta

Journal of Visualized Experiments     2022.6

SNORKEL Genes Relating to Flood Tolerance Were Pseudogenized in Normal Cultivated Rice Reviewed

Keisuke Nagai, Yusuke Kurokawa, Yoshinao Mori, Anzu Minami, Stefan Reuscher, Jianzhong Wu, Takashi Matsumoto, Motoyuki Ashikari.

Plants   Vol. 11 ( 3 ) page： 376   2022.2

Noninvasive imaging of hollow structures and gas movement revealed the gas partial-pressure-gradient-driven long-distance gas movement in the aerenchyma along the leaf blade to submerged organs in rice

Yin Yong-Gen, Mori Yoshinao, Suzui Nobuo, Kurita Keisuke, Yamaguchi Mitsutaka, Miyoshi Yuta, Nagao Yuto, Ashikari Motoyuki, Nagai Keisuke, Kawachi Naoki

NEW PHYTOLOGIST   Vol. 232 ( 5 ) page： 1974 - 1984   2021.12

Marker-Assisted Introgression and Stacking of Major QTLs Controlling Grain Number (Gn1a) and Number of Primary Branching (WFP) to NERICA Cultivars

Reyes Vincent P., Angeles-Shim Rosalyn B., Mendioro Merlyn S., Manuel Ma Carmina C., Lapis Ruby S., Shim Junghyun, Sunohara Hidehiko, Nishiuchi Shunsaku, Kikuta Mayumi, Makihara Daigo, Jena Kshirod K., Ashikari Motoyuki, Doi Kazuyuki

PLANTS-BASEL   Vol. 10 ( 5 )   2021.5

Exploring the Loci Responsible for Awn Development in Rice through Comparative Analysis of All AA Genome Species

Bessho-Uehara Kanako, Yamagata Yoshiyuki, Takashi Tomonori, Makino Takashi, Yasui Hideshi, Yoshimura Atsushi, Ashikari Motoyuki

PLANTS-BASEL   Vol. 10 ( 4 )   2021.4

Fine mapping and characterization of two novel quantitative trait loci for early seedling growth in rice

Cheng Peng, Cao Ling-Jie, Bai Chen, Ashikari Motoyuki, Song Xian-Jun

PLANTA   Vol. 253 ( 2 )   2021.2

*Antagonistic regulation of the gibberellic acid response during stem growth in rice

Nagai Keisuke, Mori Yoshinao, Ishikawa Shin, Furuta Tomoyuki, Gamuyao Rico, Niimi Yoko, Hobo Tokunori, Fukuda Moyuri, Kojima Mikiko, Takebayashi Yumiko, Fukushima Atsushi, Himuro Yasuyo, Kobayashi Masatomo, Ackley Wataru, Hisano Hiroshi, Sato Kazuhiro, Yoshida Aya, Wu Jianzhong, Sakakibara Hitoshi, Sato Yutaka, Tsuji Hiroyuki, Akagi Takashi, Ashikari Motoyuki

NATURE   Vol. 584 ( 7819 ) page： 109 - +   2020.8

Diverse panicle architecture results from various combinations ofPrl5/GA20ox4 and Pbl6/APO1alleles

Agata Ayumi, Ando Koki, Ota Sadayuki, Kojima Mikiko, Takebayashi Yumiko, Takehara Sayaka, Doi Kazuyuki, Ueguchi-Tanaka Miyako, Suzuki Takamasa, Sakakibara Hitoshi, Matsuoka Makoto, Ashikari Motoyuki, Inukai Yoshiaki, Kitano Hidemi, Hobo Tokunori

COMMUNICATIONS BIOLOGY   Vol. 3 ( 1 )   2020.6

Molecular mechanisms and future improvement of submergence tolerance in rice. Invited Reviewed

Kuroha Takeshi, Ashikari Motoyuki.

  Vol. 55 ( 1 )   2020.4

Marker-Assisted Introgression of Quantitative Resistance Gene pi21 Confers Broad Spectrum Resistance to Rice Blast

Angeles-Shim Rosalyn B., Reyes Vincent P., del Valle Marilyn M., Lapis Ruby S., Shim Junghyun, Sunohara Hidehiko, Jena Kshirod K., Ashikari Motoyuki, Doi Kazuyuki

RICE SCIENCE   Vol. 27 ( 2 ) page： 113 - 123   2020.3

Metabolite and Phytohormone Profiling Illustrates Metabolic Reprogramming as an Escape Strategy of Deepwater Rice during Partially Submerged Stress

Fukushima Atsushi, Kuroha Takeshi, Nagai Keisuke, Hattori Yoko, Kobayashi Makoto, Nishizawa Tomoko, Kojima Mikiko, Utsumi Yoshinori, Oikawa Akira, Seki Motoaki, Sakakibara Hitoshi, Saito Kazuki, Ashikari Motoyuki, Kusano Miyako

METABOLITES   Vol. 10 ( 2 )   2020.2

Evaluation of Backcrossed Pyramiding Lines of the Yield-related Gene and the Bacterial Leaf Blight Resistant Genes. Invited Reviewed

Yamada S., Kurokawa Y., Nagai K., Shim R., Yasui H., Furuya N., Yoshimura A., Doi K., Ashikari M., Sunohara H.

J Intl Cooper Agric     2020

Molecular mechanisms and future improvement of submergence tolerance in rice. Invited Reviewed

Kuroha Takeshi, Ashikari Motoyuki

    2020

Sucrose affects the developmental transition of rhizomes in Oryza longistaminata (vol 131, pg 693, 2018)

Bessho-Uehara Kanako, Nugroho Jovano Erris, Kondo Hirono, Angeles-Shim Rosalyn B., Ashikari Motoyuki

JOURNAL OF PLANT RESEARCH   Vol. 132 ( 4 ) page： 569 - 569   2019.7

Diel O-2 Dynamics in Partially and Completely Submerged Deepwater Rice: Leaf Gas Films Enhance Internodal O-2 Status, Influence Gene Expression and Accelerate Stem Elongation for 'Snorkelling' during Submergence

Mori Yoshinao, Kurokawa Yusuke, Koike Masaya, Malik Al Imran, Colmer Timothy David, Ashikari Motoyuki, Pedersen Ole, Nagai Keisuke

PLANT AND CELL PHYSIOLOGY   Vol. 60 ( 5 ) page： 973 - 985   2019.5

*Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding

Kuroh Takeshi, Nagai Keisuke, Gamuyao Rico, Wang Diane R., Furuta Tomoyuki, Nakamori Masanari, Kitaoka Takuya, Adachi Keita, Minami Anzu, Mori Yoshinao, Mashiguchi Kiyoshi, Seto Yoshiya, Yamaguchi Shinjiro, Kojima Mikiko, Sakakibara Hitoshi, Wu Jianzhong, Ebana Kaworu, Mitsuda Nobutaka, Ohme-Takagi Masaru, Yanagisawa Shuichi, Yamasaki Masanori, Yokoyama Ryusuke, Nishitani Kazuhiko, Mochizuki Toshihiro, Tamiya Gen, McCouch Susan R., Ashikari Motoyuki

SCIENCE   Vol. 361 ( 6398 ) page： 181-185   2018.7

Sucrose affects the developmental transition of rhizomes in <i>Oryza longistaminata</i>

Bessho-Uehara, K; Nugroho, JE; Kondo, H; Angeles-Shim, R; Ashikari, M

JOURNAL OF PLANT RESEARCH   Vol. 131 ( 4 ) page： 693 - 707   2018.7

Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding

Minami, A; Yano, K; Gamuyao, R; Nagai, K; Kuroha, T; Ayano, M; Nakamori, M; Koike, M; Kondo, Y; Niimi, Y; Kuwata, K; Suzuki, T; Higashiyama, T; Takebayashi, Y; Kojima, M; Sakakibara, H; Toyoda, A; Fujiyama, A; Kurata, N; Ashikari, M; Reuscher, S

PLANT PHYSIOLOGY   Vol. 176 ( 4 ) page： 3081 - 3102   2018.4

Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.

Kurokawa Y., Nagai N., Hung P.D., Shimazaki K., Qu H., Mori Y., Toda Y., Kuroha K., Hayashi N., Aiga S., Itoh J., Yoshimura A., Sasaki-Sekimoto Y., Ohta H., Shimojima M., Malik A.I., Pedersen O., Colmer T.D. Ashikari M.

New Phytologist     2018.3

Introgression of a functional epigenetic OsSPL14(WFP) allele into elite indica rice genomes greatly improved panicle traits and grain yield

Kim Sung-Ryul, Ramos Joie M., Hizon Rona Joy M., Ashikari Motoyuki, Virk Parminder S., Torres Edgar A., Nissila Eero, Jena Kshirod K.

SCIENTIFIC REPORTS   Vol. 8   2018.3

Time-course transcriptomics analysis reveals key responses of submerged deepwater rice to flooding.

Minami A, Yano K, Gamuyao R, Nagai K, Kuroha T, Ayano M, Nakamori M, Koike M, Kondo Y, Niimi Y, Kuwata K, Suzuki T, Higashiyama T, Takebayashi Y, Kojima M, Sakakibara H, Toyoda A, Fujiyama A, Kurata N, Ashikari M, Reuscher S.

Plant Physiol.     2018.2

Breeding Applications and Molecular Basis of Semi-dwarfism in Rice

Nagai K., Hirano K., Angeles-Shim R.B., Ashikari M.

Rice Genomics, Genetics and Breeding     page： 155-176   2018.2

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species

Reuscher Stefan, Furuta Tomoyuki, Bessho-Uehara Kanako, Cosi Michele, Jena Kshirod K., Toyoda Atsushi, Fujiyama Asao, Kurata Nori, Ashikari Motoyuki

COMMUNICATIONS BIOLOGY   Vol. 1   2018

eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice

Kuroha T., Nagai K., Kurokawa Y., Nagamura Y., Kusano M., Yasui H., Ashikari M., Fukushima A.

Front. Plant Sci.   Vol. 8   page： 1753   2017.10

Construction of rice chromosome segment substitution lines harboring Oryza barthii genome and evaluation of yield-related traits.

Bessho-Uehara K., Furuta T., Masuda K., Yamada S., Angeles-Shim R., Ashikari M., Takashi T.

Breed Sci.   Vol. 67 ( 4 ) page： 408 - 415   2017.9

A new outlook on sporadic flowering of bamboo. Invited Reviewed

Gamuyao Rico, Nagai Keisuke, Ashikari Motoyuki, Reuscher Stefan.

    2017.7

Community recommendations on terminology and procedures used in flooding and low oxygen stress research

Sasidharan, R; Bailey-Serres, J; Ashikari, M; Atwell, BJ; Colmer, TD; Fagerstedt, K; Fukao, T; Geigenberger, P; Hebelstrup, KH; Hill, RD; Holdsworth, MJ; Ismail, AM; Licausi, F; Mustroph, A; Nakazono, M; Pedersen, O; Perata, P; Sauter, M; Shih, MC; Sorrell, BK; Striker, GG; van Dongen, JT; Whelan, J; Xiao, S; Visser, EJW; Voesenek, LACJ

NEW PHYTOLOGIST   Vol. 214 ( 4 ) page： 1403 - 1407   2017.6

Hormone Distribution and Transcriptome Profiles in Bamboo Shoots Provide Insights on Bamboo Stem Emergence and Growth.

Gamuyao R., Nagai K., Ayano M., Mori Y., Minami A., Kojima M., Suzuki T., Sakakibara H., Higashiyama T., Ashikari M., Reuscher S.

Plant Cell Physiol   Vol. 58 ( 4 ) page： 702 - 716   2017.4

A single base change explains the independent origin of and selection for the nonshattering gene in African rice domestication.

Win KT., Yamagata Y., Doi K., Uyama K., Nagai Y., Toda Y., Kani T., Ashikari M., Yasui H., Yoshimura A.

New Phytologist   Vol. 213 ( 4 ) page： 1925 - 1935   2017.3

Adapting Genotyping-by-Sequencing for Rice F2 Populations.

Furuta Tomoyuki, Ashikari Motoyuki, Jena Kshirod K., Doi Kazuyuki, Reuscher Stefan

G3-GENES GENOMES GENETICS   Vol. 7 ( 3 ) page： 881-893   2017.3

Advances in molecular breeding techniques for rice

Angeles-Shim, RB; Ashikari, M

ACHIEVING SUSTAINABLE CULTIVATION OF RICE, VOL 1: BREEDING FOR HIGHER YIELD AND QUALITY   Vol. 3   page： 27 - 49   2017

Development of chromosome segment substitution lines harboring Oryza nivara genomic segments in Koshihikari and evaluation of yield-related traits. Reviewed

Furuta T., Uehara K., Shim R., Shim J., Nagai K., Ashikari M., Takashi T.

Breeding Science     2016.12

Detection of Novel QTLs Regulating Grain Size in Extra-Large Grain Rice (Oryza sativa L.) Lines

Segami S., Yamamoto K., Oki K., Noda T., Kanamori H., Sasaki H., Mori S., Ashikari M., Kitano H., Katayose Y., Iwasaki Y., Miura K

Rice     2016.7

Development of chromosome segment substitution lines (CSSLs) of Oryza longistaminata A. Chev. & Röhr in the background of the elite japonica rice cultivar, Taichung 65 and their evaluation for yield traits. Reviewed

Ramos J., Furuta T., Uehara K., Chihiro N., Shim R., Shim J, Brar D., Ashikari M. and Jena K.

Euphytica   Vol. 200   page： 151–163   2016.7

Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.

Kanako Bessho- Uehara, Diane R. Wang, Tomoyuki Furuta, Anzu Minami, Keisuke Nagai, Rico Gamuyao, Kenji Asano, Rosalyn B. Angeles-Shim, Yoshihiro Shimizu, Madoka Ayano, Norio Komeda, Kazuyuki Doi, Kotaro Miura, Yosuke Toda, Toshinori Kinoshita, Satohiro Okuda, Tetsuya Higashiyama, Mika Nomoto, Yasuomi Tada, Hidefumi Shinohara, Yoshikatsu Matsubayashi, Anthony Greenberg, Jianzhong Wu, Hideshi Yasui, Atsushi Yoshimura, Hitoshi Mori, Susan R. McCouch & Motoyuki Ashikari.

PNAS   Vol. 113 ( 32 ) page： 8969–8974   2016.6

Oryza sativa H+-ATPase (OSA) is Involved in the Regulation of Dumbbell-Shaped Guard Cells of Rice

Toda Y., Wang Y., Takahashi A., Kawai Y., Tada Y., Yamaji N., Ma J-F., Ashikari M. and Kinoshita Y.

Plant cell physiology   Vol. 57 ( 6 ) page： 1220-1230   2016.6

Two tightly linked genes at the hsa1 locus cause both F1 and F2 hybrid sterility in rice.

Kubo T., Takashi T., Ashikari M., Yoshimura A., Kurata N.

Mol Plant.   Vol. 9 ( 2 ) page： 221-32   2016.2

Construction of a versatile SNP array for pyramiding useful genes of rice.

Kurokawa Y., Noda T., Yamagata Y., Shim R. A., Sunohara H., Uehara K., Furuta T., Nagai K., Jena K. K., Yasui H., Yoshimura A., Ashikari M. and Doi K.

Plant Science   Vol. 242   page： 131-139   2016.1

Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima is Caused by Mutations in Different Loci Reviewed

Furuta T., Komeda N., Asano K., Uehara K., Gamuyao R., Shim R. A., Nagai K., Doi K. Wang D., Yasui H., Yoshimura A., Wu J., McCouch S. and Ashikari M.

Genes Genomes Genetics   Vol. 5 ( 11 ) page： 2267-74   2015.9

A Mathematical Model of Phloem Sucrose Transport as a New Tool for Designing Rice Panicle Structure for High Grain Yield Reviewed

Seki M., Feugier F. Song X-J.,Ashikari M.,Nakamura H.,Ishiyama K.,Yamaya T.,Inari-Ikeda M., Kitano H.and Satake A.

Plant cell physiology   Vol. 56   page： 605-619   2014.11

Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice. Reviewed

Song X-J., Kuroha T., Ayano M., Furuta T., Nagai K., Komeda N., Segami S., Miura K., Ogawa D., Kamura T., Suzuki T., Higashiyama T., Yamasaki M., Mori H., Inukai Y., Wu J., Kitano H., Sakakibara H., Jacobsen SE and Ashikari M

PNAS   Vol. 112 ( 1 ) page： 76-81   2014.11

QTL analysis of internode elongation in response to gibberellin in deepwater rice. Reviewed

Nagai K., Kondo Y., Kitaoka T., Noda T., Kuroha T., Shim R. A., Yasui H., Yoshimura A. and Ashikari M.

AOB plants   Vol. 6   page： 1-12   2014.6

Gibberellin biosynthesis and signal transduction is essential for internode elongation in deepwater rice. Reviewed

Ayano M, Kani T., Kojima M, Sakakibara H., Kitaoka T., Kuroha T., Shim R. A., Kitano H., Nagai K. and Ashikari M.

Plant, Cell and Environment   Vol. 37 ( 10 ) page： 2313-2324   2014

Development and evaluation of chromosome segment substitution lines (CSSLs) carrying chromosome segments derived from Oryza rufipogon in the genetic background of Oryza sativa L. Reviewed

Furuta T. , Uehara K. , Shim R. A., Shim J. H., Ashikari M. and Takashi T.

Breeding Science   Vol. 63 ( 5 ) page： 468-475   2014

OsLG1 regulates a closed panicle trait in domesticated rice Reviewed

Ishii, T., Numaguchi, K., Miura, K., Yoshida, K., Pham Thien Thanh, Than Myint Htun, Yamasaki, M., Komeda, N., Matsumoto, T., Terauchi, R., Ishikawa, R., Ashikari, M.

Nature genetics   Vol. 45 ( 4 ) page： 462-465   2013.4

Control of Tiller Growth of Rice by OsSPL14 and Strigolactones, Which Work in Two Independent Pathways Reviewed

Luo L, Li W, Miura K, Ashikari M, Kyozuka J.

Plant & Cell Physiology   Vol. 53 ( 10 ) page： 1793-1801   2012.8

Two novel QTLs regulate internode elongation in deepwater rice during the early vegetative stage. Reviewed

Nagai K., Kuroha T., Ayano M., Kurokawa Y., Shim, R. A., Angeles, Shim J., Yasui H, Yoshimura A. and Ashikari M.

Breeding Science   Vol. 62   page： 178-185   2012.4

A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes. Invited Reviewed

Shim, R. A., Asano K., Takashi T., Shim J.H., Kuroha T., Ayano M. and Ashikari M.

Rice   Vol. 28   2012

DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem. Invited Reviewed

Sato-Izawa K., Nakaba S., Tamura K., Yamagishi Y., Nakano Y., Nishikubo N., Kawai S., Kajita S., Ashikari M., Funada R., Katayama Y. and Kitano H.

Plant Cell Environ   Vol. 35 ( 11 ) page： 2031 - 2044   2012

Artificial selection for a green revolution gene during japonica rice domestication.

Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M

PNAS   Vol. 108 ( 27 ) page： 10931-10932   2011.5

Rice growth adapting to deepwater

Hattori Y, Nagai K, Ashikari M.

Curr. Opin. Plant Biol.   Vol. 14   page： 100-105   2011.2

Vacuolar Proton Pumps and Aquaporins Involved in Rapid Internode Elongation of Deepwater Rice. Reviewed

Muto Y, Segami S, Hayashi H, Sakurai J, Murai-Hatano M, Hattori Y, Ashikari M and Maeshima M

Biosc. Biotechnol. Biochem.   Vol. 75 ( 1 ) page： 114-122   2010.10

*OsSPL14 promotes panicle branching and higher grain productivity in rice. Reviewed

Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M.

  Vol. 42 ( 6 ) page： 545-549   2010.6

Stunt or elongate? Two opposite strategies by which rice adapts to floods.

Nagai K, Hattori Y, Ashikari M.

J Plant Res.   Vol. 123 ( 3 ) page： 303-9   2010.5

SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice Reviewed

Asano, K., Miyao, A., Hirochika, H., Kitano, H., Matsuoka, M., Ashikari, M.

Proc. Jpn. Acad.   Vol. 86 ( 3 ) page： 265-73   2010

Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice Reviewed

Yamamoto, E., Takashi, T., Morinaka, Y., Lin, S,. Wu, J., Matsumoto, T., Kitano, H., Matsuoka, M., Ashikari, M.

Mol. Genet. Genomics   Vol. 283 ( 4 ) page： 305-15   2010

A mitochondrial gene in nuclear genome induces reproductive barrier in rice Reviewed

Yamagata, Y., Yamamoto, E., Aya, K., Win, KT., Doi, K., Sobrizal, S., Ito, M., Kanamori, H., Wu, J., Matsumoto, T., Matsuoka, M., Ashikari, M., Yoshimura, A

PNAS   Vol. 107 ( 4 ) page： 1494-1499   2010

Development and evaluation of Oryza glaberrima Steud. chromosome segment substitution lines (CSSLs) in the background of O. sativa L. cv. Koshihikari

Shim, R. A. , Angeles, E. R., Ashikari, M. and Takashi, T.

Breeding Science   Vol. 60 ( 5 ) page： 613-619   2010

*The ethylene response factors Snorkel1 and Snorkel2 allow rice to adapt to deepwater Reviewed

Hattori, Y., Nagai, K., Furukawa, F., Song X.-J., Kawano, R., Sakakibara, H., Wu, J., Matsumoto, T., Yoshimura, A., Kitano, H., Matsuoka, M., Mori, H. and *Ashikari, M.

Nature   Vol. 460   page： 1026-1030   2009.8

*A metastable DWARF1 epigenetic mutant affecting plant stature in rice Reviewed

  Vol. 106   page： 11218-11223   2009.7

Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa Reviewed

Kojima, M., Kamada-Nobusada, T., Komatsu, H., Takei, K., Kuroha, T., Mizutani, M., Ashikari, M., Ueguchi-Tanaka, M., Matsuoka, M., Suzuki K, Sakakibara H.

Plant Cell Physiol   Vol. 50 ( 7 ) page： 1201-1214   2009

Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice Reviewed

Asano, K. **, Hirano, K., Ueguchi-Tanaka, M., Angeles-Shim, R. B., Komura, T., Satoh, H., Kitano, H., Matsuoka, M. and Ashikari, M.

Mol. Genet. Genomics   Vol. 281 ( 2 ) page： 223-231   2009

High-resolution mapping revealed a 1.3-Mbp genomic inversion in Ssi1, a dominant semidwarf gene in rice (Oryza sativa L.) Reviewed

Miura, K., Wu, J., Sunohara, H., Wu, X., Matsumoto, T., Matsuoka, M., Ashikari, M. and Kitano, H.

Plant Breeding   Vol. 128 ( 1 ) page： 63-69   2009

A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos Reviewed

Sazuka, T., Kamiya, N. , Nishimura, T. , Ohmae, K., Sato, Y., Imamura, K., Nagato, Y.,Koshiba, T., Nagamura, Y., Ashikari, M., Kitano, H., Matsuoka, M

  Vol. 60 ( 2 ) page： 227-241   2009

The hybrid breakdown 1 (t) locus induces interspecific hybrid breakdown between rice Oryza sativa cv. Koshihikari and its wild relative O. nivara. Reviewed

Miura, K., Yamamoto, E., Morinaka, Y., Takashi, T., Kitano, H., Matsuoka, M. and Ashikari, M.

Breeding Science   Vol. 58 ( 2 ) page： 99-105   2008

Mapping of three QTLs that regulate internode elongation in deepwater rice. Reviewed

Hattori, Y., Nagai, K., Mori, H., Kitano, H., Matsuoka, M. and Ashikari, M.

Breeding Science   Vol. 58 ( 1 ) page： 39-46   2008

Genetic and molecular analysis of utility of sd1 alleles in rice breeding. Reviewed

Asano, K., Takashi, T., Miura, K., Qian, Q., Kitano, H., Matsuoka, M. and Ashikari, M.

Breeding Science   Vol. 57 ( 1 ) page： 53-58   2007

The small interfering RNA production pathway is required for shoot meristem initiation in rice. Reviewed

Nagasaki, H., Itoh, J., Hayashi, K., Hibara, K., Satoh-Nagasawa, N., Nosaka, M., Mukouhata, M., Ashikari, M., Kitano, H., Matsuoka, M., Nagato, Y. and Sato, Y.

PNAS   Vol. 104 ( 37 ) page： 14867-14871   2007

A Major QTL Confers Rapid Internode Elongation in Response to Water Rise in Deepwater Rice. Reviewed

Hattori, Y., Miura, K., Asano, K., Yamamoto, E., Mori, H., Kitano, H., Matsuoka, M. and Ashikari, M.

Breeding Science   Vol. 57 ( 4 ) page： 305-314   2007

Gibberellin regulates pollen viability and pollen tube growth in rice. Reviewed

Tory, C., Aya, K., Asano, K., Yamamoto, E., Morinaka, Y., Watanabe, M., Kitano, H., Ashikari, M., Matsuoka, M. and Ueguchi-Tanaka, M.

Plant Cell   Vol. 19 ( 12 ) page： 3876-3888   2007

The GID1-Mediated Gibberellin Perception Mechanism Is Conserved in the Lycophyte Selaginella moellendorffii but Not in the Bryophyte Physcomitrella patens. Reviewed

Hirano, K., Nakajima, M., Asano, K., Nishiyama, T., Sakakibara, H., Kojima, M., Katoh, E., Xiang, H., Tanahashi, T., Hasebe, M., Banks, JA., Ashikari, M., Kitano, H., Ueguchi-Tanaka, M. and Matsuoka, M.

Plant Cell   Vol. 19 ( 10 ) page： 3058-3079   2007

Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin. Reviewed

Ueguchi-Tanaka, M., Nakajima, M., Katoh, E., Ohmiya, H., Asano, K., Saji, S., Hongyu, X., Ashikari, M., Kitano, H., Yamaguchi, I. and Matsuoka, M.

Plant Cell   Vol. 19 ( 7 ) page： 2140-2155   2007

A quantitative trait locus regulating rice grain width.

Matsuoka, M. and Ashikari, M.

Nature Genet   Vol. 39 ( 5 ) page： 583-584   2007

Application of Functional Genomics Tools for Crop Improvement.

Ashikari, M., Matsuoka, M. and Masahiro Y.

Rice Functional Genomics: Challenges, Progress and Prospects     page： 411-423   2007

Gibberellin receptor and its role in gibberellin signaling in plants.

Ueguchi-Tanaka, M., Nakajima, M., Ashikari, M. and Matsuoka, M.

Annu. Rev. Plant Biol.   Vol. 58   page： 183-198   2007

Interaction of two recessive genes, hbd2 and hbd3, induces hybrid breakdown in rice. Reviewed

Yamamoto, E., Takashi, T., Morinaka, Y., Lin, S., Kitano, H., Matsuoka, M. and Ashikari, M.

Theoretical and applied genetics   Vol. 115 ( 2 ) page： 187-194   2007

Identification, isolation and pyramiding of quantitative trait loci for rice breeding.

Ashikari, M. and Matsuoka, M.

TRENDS in Plant Sci.   Vol. 11 ( 7 ) page： 344-350   2006

Effects of Ssi1 gene controlling dm-type internode elongation pattern on lodging resistance and panicle characters in rice. Reviewed

Sunohara, H., Miura, K., Wu, X., Saeda, T., Mizuno, S., Ashikari, M., Matsuoka, M. and Kitano, H.

Breeding Science   Vol. 56 ( 3 ) page： 261-268   2006

The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis. Reviewed

Shimada, A., Ueguchi-Tanaka, M., Sakamoto, T., Fujioka, S., Takatsuto, S., Yoshida, S., Sazuka, T., Ashikari, M. and Matsuoka, M.

Plant J.   Vol. 48 ( 3 ) page： 390-402   2006

Expression of the Vacuolar Ca2+/H+ Exchanger, OsCAX1a, in Rice: Cell and Age Specificity of Expression, and Enhancement by Ca2+. Reviewed

Kamiya, T., Akahori, T., Ashikari, M. and Maeshima, M.

Plant Cell Physiol.   Vol. 47 ( 1 ) page： 96-106   2006

GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers. Reviewed

Tsuji, H., Aya, K., Ueguchi-Tanaka, M., Shimada, Y., Nakazono, M., Watanabe, R., Nishizawa, N-K., Gomi, K., Shimada, A., Kitano, H., Ashikari, M. and Matsuoka, M.

Plant J.   Vol. 47 ( 3 ) page： 427-444   2006

Morphological Alteration Caused by Brassinosteroid Insensitivity Increases the Biomass and Grain Production of Rice. Reviewed

Morinaka, Y., Sakamoto, T., Inukai, Y., Agetsuma, M., Kitano, H., Ashikari, M. and Matsuoka, M.

Plant Physiol.   Vol. 141 ( 3 ) page： 924-931   2006

Morphological Alteration Caused by Brassinosteroid Insensitivity Increases the Biomass and Grain Production of Rice. Invited Reviewed

Morinaka Y., Sakamoto T., Inukai Y., Agetsuma M., Kitano H., Ashikari M. and Matsuoka M.

Plant Physiol   Vol. 141 ( 3 ) page： 924 - 931   2006

Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice. Reviewed

Itoh, H., Shimada, A., Ueguchi-Tanaka, M., Kamiya, N., Hasegawa, Y., Ashikari, M. and Matsuoka, M.

Plant J.   Vol. 44   page： 669-679   2005

A Novel Cytochrome P450 Is Implicated in Brassinosteroid Biosynthesis via the Characterization of a Rice Dwarf Mutant, dwarf11, with Reduced Seed Length. Reviewed

Tanabe, S., Ashikari, M., Fujioka, S., Takatsuto, S., Yoshida, S., Yano, M., Yoshimura, A., Kitano, H., Matsuoka, M., Fujisawa, Y., Kato, H. and Iwasaki, Y.

Plant Cell   Vol. 17   page： 776-790   2005

Circadian-Associated Rice Pseudo Response Regulators (OsPRRs) : Insight into the Control of Flowering Time. Reviewed

Murakami, M., Matsushita, A., Ashikari, M., Yamashino, T. and Mizuno, T.

Biosci. Biotechnol. Biochem.   Vol. 69   page： 410-414   2005

Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling. Reviewed

Inukai, Y., Sakamoto,T., Ueguchi-Tanaka, M., Shibata, Y., Gomi, K., Umemura, I., Hasegawa, Y., Ashikari, M., Kitano, H. and Matsuoka, M.

Plant Cell   Vol. 17   page： 1387-1396   2005

*Cytokinin oxidase regulates rice grain production. Reviewed

Ashikari, M., Sakakibara, H., Lin, S., Yamamoto, T., Takashi, T., Nishimura, A., Angeles, R. E., Qian, Q., Kitano, H. and Matsuoka, M.

Science   Vol. 309   page： 741-745   2005

The rice brassinosteroid-deficient dwarf2 mutant (brd2), defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1 , is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone. Reviewed

Hong, Z., Ueguchi-Tanaka, M., Fujioka, S., Takatsuto, S., Yoshida, S., Hasegawa, Y., Ashikari, M., Kitano, K. and Matsuoka, M.

Plant Cell   Vol. 17   page： 2243-2254   2005

*GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin. Reviewed

Ueguchi-Tanaka M., Ashikari, M., Nakajima, M., Itoh H., Katoh E., Kobayashi M., Chow, T.-Y., Hsing, Y. C., Kitano, H., Yamaguchi, I. and Matsuoka, M.

Nature   Vol. 437   page： 693-698   2005

Isolation of a rice regeneration QTL gene and its application to new transformation system. Reviewed

Nishimura, A., Ashikari, M., Lin, S., Takashi, T., Angeles, E.R., Yamamoto,T. and Makoto Matsuoka, M.

PNAS   Vol. 102   page： 11940-11944   2005

Dissection of the Phosphorylation of Rice DELLA Protein, SLENDER RICE1. Reviewed

Itoh H, Sasaki A, Ueguchi-Tanaka M, Ishiyama K, Kobayashi M, Hasegawa Y, Minami E, Ashikari M, Matsuoka M.

Plant Cell Physiol.   Vol. 46   page： 1392-1399   2005

Analysis of the rice mutant dwarf and gladius leaf 1: aberrant katanin-mediated microtubule organization causes upregulation of gibberellin biosynthetic genes independently of gibberellin signaling. Reviewed

Komorisono, M., Ueguchi-Tanaka, M., Aichi, I., Hasegawa, Y., Ashikari, M., Kitano, H., Matsuoka, M. and Sazuka T.

Plant Physiol.   Vol. 138   page： 1982-1993   2005

QTL Detection and Application to Plant Breeding.

Ashikari, M. and Matsuoka, M.

ISB News Report, Information systems for Biotecnology     page： 7-9   2005

Dissection of the Phosphorylation of Rice DELLA Protein, SLENDER RICE1. Invited Reviewed

Itoh H., Sasaki A., Ueguchi-Tanaka M., Ishiyama K., Kobayashi M., Hasegawa Y., Minami E., Ashikari M. and Matsuoka, M.

Plant Cell Physiol   Vol. 46 ( 8 ) page： 1392 - 1399   2005

Mapping of the Temperature sensitivE gene, TS. Invited Reviewed

Hattori Y., Kaneko M., Ashikari M., Matsuoka M. and Hattori K.

Rice Genet Newslet 22,64-66. (2005)   Vol. 22   page： 64 - 66   2005

Detection QTLs for deepwater rice ability. Invited Reviewed

Hattori Y., Ashikari M., Kitano H. and Matsuoka M.

Rice Genet Newslet   Vol. 22   page： 67 - 68   2005

An overview of gibberellin metabolism enzyme genes and their related mutants in rice. Reviewed

Sakamoto, T., Miura, K., Itoh, H., Tatsumi, T., Ueguchi-Tanaka, M., Ishiyama, K., Kobayashi, M., Agrawal, G. K., Takeda, S., Abe, K., Miyao, A., Hirochika, H., Kitano, H., Ashikari, M. and Matsuoka, M.

Plant Physiol.   Vol. 134   page： 1642-1653   2004

The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1. Reviewed

Suzaki, T., Sato, M., Ashikari, M., Miyoshi, M., Nagato, Y. and Hirano, H.

Research article.   Vol. 131   page： 5649-5657   2004

Loss-of-function mutations of the rice GAMYB gene impair the α-amylase expression in aleurone and flower development. Reviewed

Kaneko, M., Inukai, Y., Ueguchi-Tanaka, M., Itoh, H., Izawa, T., Kobayashi, Y., Hattori, T., Miyao, A., Hirochika, H., Ashikari, M., Matsuoka, M.

Plant Cell   Vol. 16   page： 33-44   2004

GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin dependent degradation of SLR1 in rice. Reviewed

Gomi, K., Sasaki, A., Itoh, H., Ueguchi-Tanaka, M., Ashikari, M., Kitano, H. and Matsuoka, M.

Plant J.   Vol. 37   page： 626-634   2004

A rice semi-dwarf gene, Tan-Ginbozu(D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase. Reviewed

Itoh, H., Tatsumi, T., Sakamoto, T., Otomo, K., Toyomasu, T., Kitano, H., Ashikari, M., Ichihara, S. and Matsuoka, M.

Plant Mol. Biol.   Vol. 54   page： 533-547   2004

Map-based cloning of the Hd1 gene controlling photoperiod sensitivity in rice. Invited Reviewed

Ashikari, M., Katayose, Y., Yamanouchi, U., Monna, L., Fuse, T., Sasaki, T. and Yano, M.

    2004

*Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant. Reviewed

Sasaki, A., Itoh, H., Gomi, K., Ueguchi-Tanaka, M., Ishiyama, K., Kobayashi, M., Jeong, D.H., An, G., Kitano, H., Ashikari, M. and Matsuoka, M.

Science   Vol. 299   page： 1896-1898   2003

Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants? Reviewed

Kaneko, M., Itoh, H., Inukai, Y., Sakamoto, T., Ueguchi-Tanaka, M., Ashikari, M. and Matsuoka, M.

Plant J.   Vol. 35   page： 104-115   2003

A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss-of-function of a new member of cytochrome P450. Reviewed

Hong, Z., Ueguchi-Tanaka, M., Umemura, K., Uozu, S., Fujioka, S., Takatsuoto, S., Yoshida, S., Ashikari, M., Kitano, H. and Matsuoka, M.

Plant Cell   Vol. 15   page： 2900-2910   2003

Mapping of the lazy gene, la. Invited Reviewed

Miura K., Ashikari M., Matsuoka M. and Hsing Y. I. C.

Rice Genet Newslet   Vol. 20 ( 29 ) page： 30   2003

The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Invited Reviewed

Murakami M., Ashikari M., Miura K., Yamashino T. and Mizuno T.

Plant Cell Physiol   Vol. 44 ( 11 ) page： 1229 - 1236   2003

A rice spotted leaf gene, spl7, encodes a heat stress transcriptional factor protein. Reviewed

Yamanouchi, U., Yano, M., Lin, H., Ashikari, M. and Yamada, K.

PNAS   Vol. 99   page： 7530-7535   2002

The gibberellin signaling pathway is regulated by appearance and disappearance of SLENDER RICE 1 in nuclei. Reviewed

Itoh, H., Ueguxhi-Tanaka, M., Sato, Y., Ashikari, M.and Matsuoka, M.

Plant Cell   Vol. 14   page： 57-70   2002

*Rice gibberellin synthesis gene Reviewed

Sasaki, A., Ashikari, M., Ueguchi-Tanaka, M., Itoh, H., Nishimura, A., Datta, S., Ishiyama, K., Saito, T., Kobayashi, M., G. S. Khush, Kitano, H. and Matsuoka, M.

Nature   Vol. 416   page： 701-702   2002

Mapping and expression of rice GAMYB. Invited Reviewed

Kaneko M., Ashikari M. and Matsuoka M.

Rice Genet Newslet   Vol. 19   page： 60 - 62   2002

High resolution map of Dwarf 50 (D50) in rice. Invited Reviewed

Sato K., Ashikari M., Tamura K., Mase K., Kitano H., Matsuoka M and Katayama Y.

Rice Genet Newslet   Vol. 19   page： 31 - 33   2002

Mapping of the CROWN ROOTLESS1 gene, CRL1, by CAPS analysis. Invited Reviewed

Inukai Y, Shibata Y., Kitano H., Ashikari M. and Matsuoka M.

Rice Genet Newslet   Vol. 19 ( 29 ) page： 31   2002

Modification of Rice Plant Height by Suppressing the Height-Controlling Gene, D18, in Rice. Invited Reviewed

Itoh H., Ueguchi-Tanaka M., Sakamoto T., Kayano T., Tanaka H., Ashikari M. and Matsuoka M.

Breeding Science   Vol. 52 ( 3 ) page： 215 - 218   2002

Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem. Invited Reviewed

Hong Z., Ueguchi-Tanaka M., Shimizu-Sato S., Inukai Y., Fujioka S., Shimada Y., Takatsuto S., Agetsuma M., Yoshida S., Watanabe Y., Uozu S., Kitano H., Ashikari M. and Matsuoka M.

Plant J   Vol. 32 ( 4 ) page： 495 - 508   2002

Loss-of-function of a rice gibberellin biosynthetic gene, GA20 oxidase(GA20ox-2), led to the rice ‘Green Revolution’. Invited Reviewed

Breeding Science   Vol. 52 ( 2 ) page： 143 - 150   2002

Identification and characterization of a quantitative trait locus, Hd9, controlling heading date in rice. Invited Reviewed

Lin H.X., Ashikari M., Yamanouchi U., Sasaki T. and Yano M.

Breeding Science   Vol. 52 ( 1 ) page： 35 - 41   2002

The α-Amylase induction in endosperm during rice seed germination is caused by gibberellin synthesized in epithelium. Invited Reviewed

Kaneko M., Itoh H., Ueguchi-Tanaka M., Ashikari M. and Matsuoka M.

Plant Physiol   Vol. 128 ( 4 ) page： 1264 - 1270   2002

Isolation and characterization of a cDNA encoding an orthologue of ROUGH SHEATH2 (OsRS2) from rice. Invited Reviewed

Sato Y., Nishimura A., Sakamoto T., Ashikari M. and Matsuoka M.

Plant Biotech   Vol. 19 ( 1 ) page： 11 - 18   2002

Auxin response factor family in rice. Invited Reviewed

Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H-Y. and Matsuoka M.

Genes Genet Syst   Vol. 76 ( 6 ) page： 373 - 380   2001

Mapping of ORGANLESS1 gene, ORL1. Invited Reviewed

Kamiya N., Ashikari M., Sato Y., Nagato Y., Kitano H. and Matsuoka M.

Rice Genet Newslet   Vol. 18   page： 33 - 34   2001

Mapping of ABERRANT REGIONALIZATION OF EMBRYO 1 gene, ARE1, by CAPS analysis. Invited Reviewed

Ito M., Sato Y., Kitano H., Nagato Y., Ashikari M. and Matsuoka M.

Rice Genet Newslet   Vol. 18   page： 31 - 32   2001

Mapping of MORI1 gene. Invited Reviewed

Nishimura A., Sato Y., Kitano H., Nagato Y., Ashikari M. and Matsuoka M.

Rice Genet Newslet   Vol. 18 ( 30 ) page： 31   2001

A High resolution mapping of SHOOT ORGANIZATION 2 gene，SHO2. Invited Reviewed

Mukohhata M., Ashikari M., Kitano H., Nagato Y. and Matsuoka M.

Rice Genet Newslet   Vol. 18   page： 17 - 19   2001

Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS. Reviewed

Yano, M., Katayose, Y., Ashikari, M., Yamanouchi, U., Monna, L., Fuse, T., Baba, T., Yamamoto, K., Umehara, U., Nagamura, Y. and Sasaki, T.

Plant Cell   Vol. 12   page： 2473-2483   2000

Loss of function of a rice BRASSINOSTEROID INSENSITIVE 1 homolog prevents internode elongation and bending of the lamina joint. Reviewed

Yamamuro, C., Ihara, Y., Wu, X., Noguchi, T., Fujioka, S., Takatsuto, S., Ashikari, M., Kitano, H. and Matsuoka, M.

Plant Cell   Vol. 12   page： 1591-1605   2000

Rice dwarf mutant, d1, which is defective in the subunit of the heterotrimeric G protein affects gibberellin signal transduction. Reviewed

Tanaka-Ueguchi, M., Fujisawa, Y., Kobayashi, M., Ashikari, M., Iwasaki, Y., Kitano, H. and Matsuoka, M.

Proc. Natl. Acad. Sci. USA   Vol. 97   page： 11638-11643   2000

High resolution map of dwarf mutant gene, dwarf11 of rice. Invited Reviewed

Tanabe S. B., Ashikari M., Yano M., Yoshimura A., Matsuoka M., Kitano H., Asahi T. and Iwasaki Y.

Rice Genet Newslet   Vol. 15   page： 18 - 19   2000

High resolution mapping of a rice gene affecting shoot organization, SHO1. Invited Reviewed

Mukohhata M., Ashikari M., Miwa M., Sasaki T., Nagato Y., Kitano H. and Matsuoka M.

Rice Genet Newslet   Vol. 17   page： 24 - 26   2000

Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the alpha-subunit of GTP-binding protein. Reviewed

Ashikari, M., Wu, J., Yano, M., Sasaki, T. and Yoshimura, A.

Proc. Natl. Acad. Sci. USA   Vol. 96   page： 10284-10289   1999

Increased frequency of chimeric plants in progenies of dwarf chimeric rice plant treated with 5-azacytidine. Invited Reviewed

Ashikari M., Ideta O., Yoshimura A. and Iwata N.

Rice Genet Newslet   Vol. 14   page： 55 - 56   1997

Genetic analysis of a d1 chimeric rice plant. Invited Reviewed

Ashikari M., Ideta O., Yoshimura A. and Iwata N.

International Rice Research Notes (IRRN)   Vol. 22   page： 12 - 13   1997

Fine map of d-1 gene in rice. Invited Reviewed

Ashikari M., Ideta O., Yoshimura A. and Iwata, N.

Rice Genet Newslet   Vol. 13   page： 76 - 77   1996

Integration of conventional and RFLP linkage map in rice, III. Chromosome 5, 7, 8 and 12. Invited Reviewed

Ideta O., Yoshimura A., Ashikari M. and Iwata N.

Rice Genet Newslet   Vol. 11   page： 116 - 117   1994

Achieving sustainable cultivation of rice (Advances in molecular breeding techniques for rice.)

Angeles-Shim R. B. and Ashikari M.（ Role： Joint author）

Burleigh Dodds Science Publishing  2017.10 

Community recommendations on terminology and procedures used in flooding and low oxygen stress research.

Sasidharan R., Bailey-Serres J., Ashikari M., Atwell B. J., Colmer T. D., Fagerstedt K., Fukao T., Geigenberger P., Hebelstrup K. H., Hill R. D., Holdsworth M. J., Ismail A. M., Licausi F., Mustroph A., Nakazono M., Pedersen O., Perata P., Sauter M., Shih M., Sorrell B. K., Striker G. G., van Dongen J. T., Whelan J., Xiao S., Visser E. J. W., Voesenek L. A. C. J.

New Phytologist 214(4)  2017 

ホルモンと作物－イネの芒はどうして喪失したか？～植物ホルモンの関係～

別所-上原奏子、古田智敬、芦苅基行

生物の化学　遺伝  2016.9 

浮きイネ生存戦略におけるジベレリン応答性因子の検索

永井啓祐、黒羽剛、芦苅基行

化学と生物  2016.2 

ゲノム情報を利用したイネの育種

永井啓祐、黒川裕介、土井一行、芦苅基行

国際農林業協力  2015.11 

植物科学の研究成果を利用するイネ育種プロジェクト

黒川裕介、上原奏子、芦苅基行

植物の生長調節  2013 

植物ゲノム研究で世界の食糧危機を救う

芦苅基行

宙舞（自動車技術会中部支部報）  2013 

ストリゴラクトン様化合物カロラクトンの新たな生合成経路

上原奏子、芦苅基行

化学と生物  2013 

穂を大きくする遺伝子の発見とその応用

三浦孝太郎、北野英巳、芦苅基行

月刊 食料と安全  2011.7 

イネの洪水における異なる2つの生存戦略

永井啓祐、服部洋子、芦苅基行

化学と生物  2011.4 

イネ収量増加遺伝子の発見－穀物増産を通した食糧危機回避へチャレンジ－

三浦孝太郎、北野英巳、芦苅基行

研究ジャーナル、農林水産技術  2011.4 

エチレン応答における遺伝子発現制御

服部洋子、永井啓祐、芦苅基行

植物のシグナル伝達－分子と応答－共立出版  2010 

東南アジアなどで栽培される浮イネの洪水回避機構の解明

服部洋子, 芦苅基行

BRAINテクノニュース  2010 

Rice Biology in the Genomics Era (Rice yielding and plant hormones.)

Ashikari, M. and Sakamoto T.（ Role： Joint author）

Springer  2008.1 

植物の生存戦略―「じっとしているという知恵」に学ぶ（「第2の緑の革命」に向けて）

「植物の軸と情報」特定領域研究班（芦苅基行）（ Role： Joint author）

朝日新聞社  2007.5 

Rice Functional Genomics: Challenges, Progress and Prospects (Application of Functional Genomics Tools for Crop Improvement.)

Ashikari, M., Matsuoka, M. and Masahiro Y.（ Role： Joint author）

Springer  2007.4 

草型変異からみたイネとオオムギの栽培化

浅野賢治、最相大輔、芦苅基行、松岡信

蛋白質・核酸・酵素、特集：栽培植物の分子生物学  2007 

「第2の緑の革命」に向けて

芦苅基行

植物の生存戦略  2007 

分子遺伝学が拓く新しい作物の育種

芦苅基行、松岡信

学術月報、特集：遺伝学  2007 

ジベレリンの核内受容体の単離とシグナル伝達

上口（田中）美弥子、芦苅基行、中島正敏、松岡信

蛋白質・核酸・酵素  2006 

豊作遺伝子の発見で「第２の緑の革命」へ

芦苅基行、松岡信

植物のかたちづくりの科学  2006 

分子育種を利用したイネの生産性向上-植物ホルモン機能を利用したアプローチ-

芦苅基行、榊原均

植物の生長調節  2006 

イネ矮性遺伝子の機能解明と穀物育種

芦苅基行

育種学研究  2004 

ジベレリン情報伝達

芦苅基行、松岡信

細胞工学別冊、植物細胞工学シリーズ  2004 

イネの伸長制御と分子育種

松岡信、芦苅基行

植物の生長調節  2004 

草型制御機構の解明と育種的利用

芦苅基行、松岡信

農林水産技術研究ジャーナル、「特集：イネゲノム解析が拓く未来」  2004 

短桿を科学する

Ashikari, M. and Matsuoka, M.

農業技術、農業技術協会、58, (4)  2003 

Mapping the rt(root growth-inhibiting) gene of rice by RFLP markers.

Miwa, M., Inukai, Y., Satoh, K., Itoh, M., Katayama, Y., Ashikari, M., Matsuoka, M. and Kitano, H.

Advances in rice genetics, IRRI  2003 

Gibberellin response and signal transduction. Gamma field symposia, Institute of Radiation Breeding

Ashikari, M., Itoh, H., Ueguchi-Tanaka, M. and Matsuoka, M.

2003 

タンパク質分解を介したジベレリンの情報伝達

芦苅基行、松岡信

社団法人日本生化学会、75, (11)   2003 

Gibberellin signal transduction in rice.

Ashikari, M., Itoh, H., Ueguchi-Tanaka, M., Sasaki, A., Gomi, K., Kitano, H. and Matsuoka, M.

J. Plant Growth and Regul., Springer New York, 22, (2)  2003 

イネ研究の現状と展望

西村明日香、芦苅基行、松岡　信

蛋白質・核酸・酵素、共立出版、47, (12)   2002 

Application of rice genomics to plant biology and breeding.

Ashikari, M. and Matsuoka, M.

Bot. Bull. Acad. Sin., Institute of Plant and Microbial Biology, 43, (1)  2002 

ジベレリンの情報伝達

伊藤博紀、上口(田中)美弥子、芦苅基行、松岡　信

蛋白質・核酸・酵素、共立出版、47, (12)   2002 

イネ突然変異体を用いたGA生合成・情報伝達の研究

芦苅基行、上口(田中)美弥子、伊藤博紀、松岡　信

植物の化学調節、植物化学調節学会編、35, (2)  2000 

イネ茎伸長の分子メカニズムの解明

松岡　信、芦苅基行、北野英己

育種学最近の進歩、日本育種学会編、養賢堂、42  2000 

Rice adapted to deepwater using plant hormones Invited International conference

Ashikari, M.

20th International Conference on Plant Growth Substances 

浮イネ関連遺伝子SNORKELと下流因子に関する解析

服部洋子, 永井啓祐, 古川静佳, 芦苅基行

第51回日本植物生理学会年会 

浮イネ遺伝子Snorkel以外の新規の浮イネ性制御遺伝子の遺伝学的解析

永井啓祐, 服部洋子, 古川静佳, 足立啓太, 鈴木健介, 芦苅基行

第51回日本植物生理学会年会 

The ethylene response factors, Snorkel 1 and Snorkel 2 allow rice to adapt to deepwater International conference

Ashikari, M.

Plant and animal genome conference 

Snorkel locus and deepwater elongation growth International conference

Ashikari, M., Hattori, Y. , Miura, K. , Nagai, K.,Angeles-Shim, R. B.

Rice functional genomics 

不良環境下における浮イネの環境適応性の遺伝学的解析

永井啓祐, 服部洋子, 古川静佳, 松本隆, 呉健忠, 北野英己, 松岡信, 芦苅基行

日本育種学会第116回講演会 

浮イネ連遺伝子Snorkel1およびSnorkel2の機能解析

服部洋子, 永井啓祐, 古川静佳, 宋献軍, 榊原均, 松岡信, 森仁志, 芦苅基行

日本育種学会第116回講演会 

多粒性獲得に向けたイネの穂型解析

池田真由子、山村卓也、芦苅基行、松岡信、北野英己

イネ遺伝学・分子生物学ワークショップ2008 

日本型イネは変異型/SD1/を有する

浅野賢治、北野英己、松岡信、芦苅基行

イネ遺伝学・分子生物学ワークショップ2008 

Study of plant hormone and environmental adaptation. International conference

CONFERENCES JACQUES-MONOD. 

ジベレリンはイネにおいて花粉形成及び花粉管伸長を制御する

安益公一郎、浅野賢治、Chhun TORY、山本栄司、上口（田中）美弥子、渡辺正夫、北野英己、芦苅基行、松岡信

日本育種学会第113回講演会 

イネにおけるジベレリン欠損変異体と非感受性変異体における遺伝様式の違い

安益公一郎、上口（田中）美弥子、Chhun TORY、浅野賢治、山本英司、渡辺正夫、北野英己、芦苅基行、松岡信

第49回日本植物生理学会年会 

ジベレリンシグナルに関与するMYB型転写因子GAMYBの葯における機能

安益公一郎、上口（田中）美弥子、辻寛之、近藤真紀、西村幹夫、芦苅基行、松岡信

第49回日本植物生理学会年会 

イネ半優性矮性変異体Slr1-dの遺伝学解析

浅野賢治、平野恒、上口（田中）美弥子、香村敏郎、佐藤光、北野英己、松岡信、芦苅基行

日本育種学会第112回講演会 

GAMYB plays the important role in pollen development as a member of GA signaling International conference

19th IPGSA Meeting 

MOLECULAR INTERACTIONS OF A SOLUBLE GIBBERELLIN RECEPTOR, GID1, WITH A RICE DELLA PROTEIN, SLR1, AND GIBBERELLIN. International conference

19th IPGSA Meeting 

２つの劣性遺伝子hbd2およびhbd3の相互作用はイネ雑種崩壊を引き起こす

山本英司、高師知紀、森中洋一、林少揚、北野英己、松岡信、芦苅基行

日本育種学会第１１１回講演会 

ジベレリン(GA)細胞内受容体GID1の機能解析（Ⅱ）

上口（田中）美弥子、中嶋正敏、加藤悦子、大宮博子、相宏宇、北野英己、芦苅基行、松岡信

第48回日本植物生理学会年会 

「ジベレリンシグナル伝達はいつ誕生したか？－陸上生物における進化－

平野恒、上口（田中）美弥子、中嶋正敏、浅野賢治、榊原　均、小嶋美紀子、西山智明、棚橋貴子、長谷部光泰、芦苅基行、北野英己、松岡　信

第48回日本植物生理学会年会 

ジベレリン核内受容体GID1の機能解析

上口（田中）美弥子、中嶋正敏、加藤悦子、大宮博子、浅野賢治、北野英己、芦苅基行、松岡信

分子生物学会2006フォーラム 

A role of gibberellin in pollen growth in rice

葯におけるジベレリン応答遺伝子の解析」　特定領域研究「植物ゲノム障壁

安益公一郎、上口（田中）美弥子、近藤真紀、辻寛之、芦苅基行、西村幹夫、松岡信

特定領域研究「植物ゲノム障壁」ワークショップ 

ジベレリン情報伝達制御因子SLR1、GID1及びGID2の相互作用

辻寛之、上口(田中）美弥子、中嶋正敏、芦苅基行、北野英巳、山口 五十麿、松岡信

第109回日本育種学会 

イネ突然変異体を用いたオーキシンの機能解析

佐塚隆志、神谷紀子、山本優子、西村岳志、森中洋一、芦苅基行、中村郁子、小柴共一、北野英己、松岡信

日本農芸化学会2006年度大会 

イネの重要農業形質QTLの検出とQTLピラミディング育種

芦苅基行、松岡信

第47回日本植物生理学会年会 

マイクロアレイによるイネの葯特異的遺伝子の解析-gamyb変異体において発現が変動する遺伝子群について

安益公一郎、上口（田中）美弥子、近藤真紀、辻寛之、芦苅基行、西村幹夫、松岡信

第47回日本植物生理学会年会 

イネ　エピジェネティック変異体Epi-d1の遺伝学的解析

三浦孝太郎、芦苅基行、北野英己、吉村淳、松岡信

第47回日本植物生理学会年会 

ジベレリン細胞内受容体の単離とシグナル伝達

上口（田中）美弥子、芦苅基行、松岡信

第47回日本植物生理学会年会 

ジベレリン(GA)細胞内受容体GID1の機能解析－GA結合部位とSLR1結合部位の同定－

上口（田中）美弥子、中嶋正敏、大宮博子、浅野賢治、北野英己、芦苅基行、松岡信

第47回日本植物生理学会年会 

ジベレリンシグナル伝達制御因子SLR1、GID1及びGID2の相互作用

辻寛之、上口(田中）美弥子、中嶋正敏、芦苅基行、北野英巳、山口 五十麿、松岡信

第47回日本植物生理学会年会 

浮イネの節間伸長に関するQTL解析

服部洋子、芦苅基行、北野英己、松岡信

第47回日本植物生理学会年会 

ゲノム情報を基盤としたイネの分子育種　－オーダー・メイド育種をめざして－

芦苅基行、松岡信

第221回日本作物学会 

Cloning and functional analysis of GA receptor gene. International conference

Plant and Animal Genome XIV. 

Identification of yield QTLs and their pyramiding in rice. International conference

Plant and Animal Genome XIV 

The SD1 locus has been widely used for producing semi-dwarf cultivars of rice. International conference

5th International Rice Genetics Symposium 

Identification of QTL for stem elongation in deepwater rice. International conference

5th International Rice Genetics Symposium 

GAMYB Controls Different Sets of Genes and Differentially Regulated by microRNA in Aleurone Cells and Anthers. International conference

5th International Rice Genetics Symposium 

A Novel epigenetic rice mutant, Epi-d1, shows chimeric phenotype. International conference

5th International Rice Genetics Symposium 

半矮性遺伝子sd1アリルはイネ半矮性品種作出に幅広く用いられた

浅野賢治、高師知紀、三浦孝太郎、芦苅基行、北野英巳、松岡信

第107、108回日本育種学会 

イネブラシノステロイド受容体遺伝子（OsBRI1）の育種的利用可能性

森中洋一、犬飼義明、坂本知昭、芦苅基行、北野英己、松岡信

第107、108回日本育種学会 

矮性で葉身先端が丸みを帯びるイネの形態異常突然変異体 dwarf and gladius leaf 1(dgl1)の解析

佐塚隆志、小森園正彦、上口（田中）美弥子、北野英己、芦苅基行、松岡信

イネ・シロイヌナズナ合同ワークショップ 

The Rice brassinosteroid-deficient dwarf2 Mutant, Defective in the Rice Homolog of Arabidopsis DIMUNUTO/DWARF1, is rescued by the Endogenously Accumulated Alternative Bioactive Brassinosteroid, Dolichosterone

GAMYB plays distinct roles in aleurone and developing flower under distinct regulation system in rice. International conference

Plant Biology 2005 

転写因子GAMYB及びGAMYB-likeの機能とmicroRNAによる制御

辻寛之、上口（田中）美弥子、芦苅基行、北野英己、松岡信

第46回日本植物生理学会年会 

イネ　エピジェネティック変異体Epi-d1の遺伝学的解析

三浦孝太郎、芦苅基行、北野英己、松岡信

第46回日本植物生理学会年会 

イネの変異体を用いたジベレリン（GA）シグナル伝達の解析ーSLR1のリン酸化は、SLR1のGA依存的分解の引き金になるのか？

伊藤博紀、佐々木章江、上口（田中）美弥子、芦苅基行、松岡信

第46回日本植物生理学会年会 

イネマイクロアレイによる葯特異的遺伝子の解析ーgamyb変異体において発現が変動する遺伝子群について

安益公一郎、上口（田中）美弥子、辻寛之、芦苅基行、松岡信

第46回日本植物生理学会年会 

DELLAドメインを持たないGRASタンパク質は、イネにおいてジベレリンシグナル伝達を抑制する

島田麻子、伊藤博紀、上口 (田中) 美弥子、神谷紀子、芦刈基行、松岡信

第46回日本植物生理学会年会 

ジベレリンシグナル伝達における核内転写因子の機能と制御

辻寛之、上口（田中）美弥子、芦苅基行、北野英己、松岡信

第27回日本分子生物学会 

葉身先端が丸みを帯びる形態異常を示すイネ矮性突然変異体dwarf and abnormal leaf morphology 1(dal1)の解析

小森園正彦、芦苅基行、上口（田中）美弥子、北野英己、松岡信、佐塚隆志

第27回日本分子生物学会年会 

浮イネの節間伸長に関与するQTLの検出

服部洋子、三浦孝太郎、浅野賢治、北野英己、芦苅基行、松岡信

第106回日本育種学会 

イネにおけるジベレリンシグナル伝達

上口（田中）美弥子、芦苅基行、松岡信

日本遺伝学会第76回大会 

Characterization of a rice semi-dwarf brassinosteroid-related mutant, Osdim International conference

18th International conference on Plant Growth Substances (IPGSA) 2004 

LOSS-OF-FUNCTION MUTATIONS OF THE RICE GAMYB GENE IMPAIR α-AMYLASE EXPRESSION IN ALEURONE AND FLOWER DEVELOPMENT. International conference

18th International conference on Plant Growth Substances (IPGSA) 2004 

Charaterization of a rice semi-dwarf brassinosteroid-related mutant, Osdim

イネの根の発生・分化を制御するCRL1遺伝子の解析

犬飼義明、柴田葉子、芦苅基行、服部一三、北野英己、松岡 信

第105回日本育種学会 

イネGAMYB遺伝子の機能破壊は胚乳におけるαアミラーゼ発現と花器官の発達に異常を来す

犬飼義明、金子美幸、上口（田中）美弥子、伊藤博紀、井澤毅、小林裕子、服部束穂、宮尾安藝雄、廣近洋彦、芦苅基行、松岡信

日本植物生理学会2004年度年会 

日本植物生理学会2004年度年会

神谷紀子、芦苅基行、北野英己、長戸康郎、松岡信

日本植物生理学会2004年度年会 

イネの茎頂分裂組織形成・維持に関わるSHL2, SHO1遺伝子の機能解析

長崎宏、伊藤純一、佐藤奈美子、伊藤百代、林克信、芦苅基行、長戸康郎、佐藤豊、松岡信

日本植物生理学会2004年度年会 

葉身に形態異常を伴うイネ矮性突然変異体 dwarf and abnormal leaf morphology 1 (dal1)の原因遺伝子の単離と解析

佐塚隆志、小森園正彦、上口（田中）美弥子、北野英己、芦苅基行、松岡信

日本植物生理学会2004年度年会 

イネの根の伸長成長を制御するRT遺伝子の解析

犬飼義明、佐藤かんな、三輪雅美、芦苅基行、片山義博、北野英己、松岡信

第104回日本育種学会 

A rice brassinosteroid-deficient mutant, ebisu dwarf (d2) , is caused by a loss-of function of a new member of cytochrome P450.

イネの根数および根長を制御するCRL1およびRT遺伝子の発現解析

犬飼義明、柴田葉子、三輪雅美、芦苅基行、北野英己、松岡信

2003年イネ分子遺伝学ワークショップ 

イネジベレリン非感受矮性遺伝子gid2の単離と機能解析

芦苅基行、伊藤博紀、佐々木章江、上口（田中）美弥子、五味剣司、小林正智、北野英己、松岡信

第103回日本育種学会 

イネGA非感受性矮性変異体GA insensitive dwarf2 (gid2)の解析

佐々木章江、伊藤博紀、五味剣二、上口（田中）美弥子、石山賀奈子、小林正智、北野英巳、芦刈基行、松岡信

植物生理学会 

イネGA非感受性変異体 GA insensitive dwarf 1 (gid1) の解析（4）

上口（田中）美弥子、芦苅基行、伊藤博紀、佐々木章江、小林正智、北野英巳、松岡信

植物生理学会 

gid2変異体はGAシグナル伝達系抑制因子SLR1タンパク質を蓄積している

伊藤博紀、佐々木章江、五味剣二、上口（田中）美弥子、北野英己、芦苅基行、松岡信

植物生理学会 

Rice functional genomics -Gibberellin- International conference

Plant functional genomics 2003 

Loss-of-function of gibbrellin biosynthetic gene, GA20 oxidase, contributed to the rice “Green revolution". International conference

Biosyntheses of plant hormones and beyond 

Mutation in a gibbrellin biosynthetic gene, GA20 oxidase, contributed to the rice “Green revolution" International conference

International Rice Congress 

ISOLATION AND CHARACTERIZATION OF THE “RICE GREEN REVOLUTION" GENE, sd1 (semi-dwarf 1) . International conference

Plant & Animal Genome IX 

イネジベレリン非感受矮性遺伝子gid1は加水分解酵素をコードしている

芦苅基行、上口（田中）美弥子、伊藤博紀、小林正智、北野英己、松岡信

第100回日本育種学会 

Map-based cloning of HD1controlling photoperiod sensitivity gene in rice. International conference

International Rice Genetics Symposium 

Isolation and characterization of gibberellin Insensitive severe dwarf mutant In rice. International conference

International Rice Genetics Symposium 

Rice Genomics Application for Plant Molecular Biology and Molecular breeding International conference

Symposium on Plant Sciences for 21st Century. 

Map-based cloning of Dwarf1gene in rice. International conference

Plant & Animal Genome VII 

High resolution mapping of d1gene in rice. International conference

Plant & Animal Genome VI 

作物の地下茎による栄養繁殖化に向けた基盤技術の開発

2013.10 - 2019.3

CREST 

WISH アフリカ稲品種開発研究

2012.12 - 2018.3

JICA 国際共同研究 

高速遺伝子型判定システムの開発と多収遺伝子を導入した有望系統群の開発

2010.11 - 2016.3

地球規模課題対応国際科学技術協力事業（SATRPS） 

「バイオマス増大にむけたイネ次世代育種法の開発と利用」 バイオマス関連遺伝子の単離とその評価

2010.8 - 2015.3

生研機構・イノベーション創出基礎的研究推進事業 

イネの量的形質遺伝子の同定（イネ茎葉伸長に関与する遺伝子の単離と機能解析）

2008.4 - 2013.3

農水省 重要農業形質 

イネ節間伸長に関するＱＴＬ遺伝子の単離および機能解析

2005.4 - 2008.3

農水省 QTL（QT2003） 

草型決定に関与するジベレリン関連遺伝子の機能解析と分子育種

2003.4 - 2008.3

農水省 重要形質 

イネの耐水機構の解明

2014.4 - 2016.3

科学研究費補助金  外国人特別研究員

深水条件下における節間伸長の分子機構

2010 - 2015.3

科学研究費補助金  新学術領域研究，課題番号：22119007

芦苅　基行

イネ雑種崩壊メカニズムの解明

2007

科学研究費補助金  若手研究（Ａ），課題番号：19688002

芦刈　基行

イネエピジェネテック変異体Ｅｐｉ‐ｄ１の遺伝子発現機構の解明

2005

科学研究費補助金  特定領域研究，課題番号：17027012

芦苅　基行

浮きイネ節間伸長に関するＱＴＬの単離と分子メカニズムの解明　　　　　　　　　　　

2005

科学研究費補助金  若手研究（Ａ），課題番号：17688001

芦苅　基行

イネ半矮性遺伝子Sd1の単離及びその分子育種学的利用

2002 - 2004

科学研究費補助金  若手研究（Ｂ），課題番号：14760003

芦苅　基行