Faculty Profiles - ODA, Masahiro

Papers - ODA, Masahiro

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Semantic segmentation dataset authoring with simplified labels Reviewed

Leo Uramoto, Yuichiro Hayashi, Masahiro Oda, Takayuki Kitasaka, Kensaku Mori

International Journal of Computer Assisted Radiology and Surgery 2025.4

Development of a YOLOv3-Based Model for Automated Detection of Thoracic Ossification of the Posterior Longitudinal Ligament and the Ligamentum Flavum on Plain Radiographs Reviewed Open Access

Sadayuki Ito, Hiroaki Nakashima, Naoki Segi, Jun Ouchida, Ippei Yamauchi, Takashi Hirai, Masahiro Oda, Kensaku Mori, Masashi Yamazaki, Toshitaka Yoshii, Shiro Imagama

Journal of Clinical Medicine Vol. 14 ( 7 ) 2025.3

Bidirectional teaching between lightweight multi-view networks for intestine segmentation from CT volume Reviewed

Qin An, Hirohisa Oda, Yuichiro Hayashi, Takayuki Kitasaka, Aitaro Takimoto, Akinari Hinoki, Hiroo Uchida, Kojiro Suzuki, Masahiro Oda, Kensaku Mori

Journal of Medical Imaging Vol. 12 ( 2 ) 2025.3

Enhanced self-supervised monocular depth estimation with self-attention and joint depth-pose loss for laparoscopic images Reviewed Open Access

Wenda Li, Yuichiro Hayashi, Masahiro Oda, Takayuki Kitasaka, Kazunari Misawa, Kensaku Mori

International Journal of Computer Assisted Radiology and Surgery 2025.2

Multi-dimensional consistency learning between 2D Swin U-Net and 3D U-Net for intestine segmentation from CT volume Reviewed

Qin An, Hirohisa Oda, Yuichiro Hayashi, Takayuki Kitasaka, Hiroo Uchida, Akinari Hinoki, Kojiro Suzuki, Aitaro Takimoto, Masahiro Oda, Kensaku Mori

International Journal of Computer Assisted Radiology and Surgery 2025.2

Classification of fundus autofluorescence images based on macular function in retinitis pigmentosa using convolutional neural networks Open Access

Kominami, T; Ueno, S; Ota, J; Inooka, T; Oda, M; Mori, K; Nishiguchi, KM

JAPANESE JOURNAL OF OPHTHALMOLOGY 2025.2

Language：English Publisher：Japanese Journal of Ophthalmology

Purpose: To determine whether convolutional neural networks (CNN) can classify the severity of central vision loss using fundus autofluorescence (FAF) images and color fundus images of retinitis pigmentosa (RP), and to evaluate the utility of those images for severity classification. Study design: Retrospective observational study. Methods: Medical charts of patients with RP who visited Nagoya University Hospital were reviewed. Eyes with atypical RP or previous surgery were excluded. The mild group was comprised of patients with a mean deviation value of > − 10 decibels, and the severe group of < − 20 decibels, in the Humphrey field analyzer 10-2 program. CNN models were created by transfer learning of VGG16 pretrained with ImageNet to classify patients as either mild or severe, using FAF images or color fundus images. Results: Overall, 165 patients were included in this study; 80 patients were classified into the severe and 85 into the mild group. The test data comprised 40 patients in each group, and the images of the remaining patients were used as training data, with data augmentation by rotation and flipping. The highest accuracies of the CNN models when using color fundus and FAF images were 63.75% and 87.50%, respectively. Conclusion: Using FAF images may enable the accurate assessment of central vision function in RP. FAF images may include more parameters than color fundus images that can evaluate central visual function.

DOI： 10.1007/s10384-025-01163-w

Artificial intelligence support improves diagnosis accuracy in anterior segment eye diseases Invited Reviewed

Hiroki Maehara, Yuta Ueno, Takefumi Yamaguchi, Yoshiyuki Kitaguchi, Dai Miyazaki, Ryohei Nejima, Takenori Inomata, Naoko Kato, Tai-ichiro Chikama, Jun Ominato, Tatsuya Yunoki, Kinya Tsubota, Masahiro Oda, Manabu Suzutani, Tetsuju Sekiryu, Tetsuro Oshika

Scientific Reports Vol. 15 2025.2

Double-mix pseudo-label framework: enhancing semi-supervised segmentation on category-imbalanced CT volumes Open Access

Zhang, LY; Hayashi, Y; Oda, M; Mori, K

INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY 2025.2

Language：English Publisher：International Journal of Computer Assisted Radiology and Surgery

Purpose: Deep-learning-based supervised CT segmentation relies on fully and densely labeled data, the labeling process of which is time-consuming. In this study, our proposed method aims to improve segmentation performance on CT volumes with limited annotated data by considering category-wise difficulties and distribution. Methods: We propose a novel confidence-difficulty weight (CDifW) allocation method that considers confidence levels, balancing the training across different categories, influencing the loss function and volume-mixing process for pseudo-label generation. Additionally, we introduce a novel Double-Mix Pseudo-label Framework (DMPF), which strategically selects categories for image blending based on the distribution of voxel-counts per category and the weight of segmentation difficulty. DMPF is designed to enhance the segmentation performance of categories that are challenging to segment. Result: Our approach was tested on two commonly used datasets: a Congenital Heart Disease (CHD) dataset and a Beyond-the-Cranial-Vault (BTCV) Abdomen dataset. Compared to the SOTA methods, our approach achieved an improvement of 5.1% and 7.0% in Dice score for the segmentation of difficult-to-segment categories on 5% of the labeled data in CHD and 40% of the labeled data in BTCV, respectively. Conclusion: Our method improves segmentation performance in difficult categories within CT volumes by category-wise weights and weight-based mixture augmentation. Our method was validated across multiple datasets and is significant for advancing semi-supervised segmentation tasks in health care. The code is available at https://github.com/MoriLabNU/Double-Mix.

DOI： 10.1007/s11548-024-03281-1

A deep learning-based prediction model for prognosis of cervical spine injury: a Japanese multicenter survey Reviewed

Sadayuki Ito, Hiroaki Nakashima, Naoki Segi, Noriaki Yokogawa, Takeshi Sasagawa, Toru Funayama, Fumihiko Eto, Akihiro Yamaji, Kota Watanabe, Satoshi Nori, Kazuki Takeda, Takeo Furuya, Atsushi Yunde, Hideaki Nakajima, Tomohiro Yamada, Tomohiko Hasegawa, Yoshinori Terashima, Ryosuke Hirota, Hidenori Suzuki, Yasuaki Imajo, Shota Ikegami, Masashi Uehara, Hitoshi Tonomura, Munehiro Sakata, Ko Hashimoto, Yoshito Onoda, Kenichi Kawaguchi, Yohei Haruta, Nobuyuki Suzuki, Kenji Kato, Hiroshi Uei, Hirokatsu Sawada, Kazuo Nakanishi, Kosuke Misaki, Hidetomi Terai, Koji Tamai, Akiyoshi Kuroda, Gen Inoue, Kenichiro Kakutani, Yuji Kakiuchi, Katsuhito Kiyasu, Hiroyuki Tominaga, Hiroto Tokumoto, Yoichi Iizuka, Eiji Takasawa, Koji Akeda, Norihiko Takegami, Haruki Funao, Yasushi Oshima, Takashi Kaito, Daisuke Sakai, Toshitaka Yoshii, Tetsuro Ohba, Bungo Otsuki, Shoji Seki, Masashi Miyazaki, Masayuki Ishihara, Masahiro Oda, Seiji Okada, Shiro Imagama, Satoshi Kato

European Spine Journal 2025.2

The importance of clinical experience in AI-assisted corneal diagnosis: verification using intentional AI misleading Reviewed

Scientific Reports Vol. 15 ( 1462 ) 2025.1

A Deployable Microscopic Image Segmentation Look-Up Table Based on A Dilated CNN

Wu Y., Pan J., Kawamura S., Oda M., Hayashi Y., Takebe T., Rueckert D., Mori K.

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 15371 LNCS page： 3 - 13 2025

Publisher：Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Microscopic image segmentation is indispensable biomedical research. However, accurately segmenting using traditional automatic segmentation methods remains challenging due to fluorescence presenting high intra- and inter-image variability, hindering biomedical analysis. Deep learning (DL)-based methods show remarkable potential in microscopic image segmentation. However, DL models typically require GPU resources, specialized programming skills, and a non-trivial environment setup, making it difficult for medical researchers to use them currently. Therefore, we propose a turnkey solution for microscopic image segmentation by Look-up Table (LUT) which is a data structure used for storing input values and pre-calculated results. Our solution can inherit the segmentation accuracy of DL-based methods and eliminates the need for extensive computational resources, specialized programming, and a complex implementation environment. Specifically, (1) By transferring all potential inputs and their DL model-computed outputs into a LUT, segmentation is achieved through direct output look-up for given pixel values. (2) Additionally, we develop a dilated CNN with adaptive edge padding, enhancing feature learning while meeting LUT building requirements. (3) Moreover, we publicly release a confocal microscopic image dataset and develop a LUT-based plugin (SEG-LUT plugin) for Fiji ImageJ. The experimental results show our framework outperforms other automatic segmentation methods in the Fiji ImageJ. Our solution offers a pathway for easily utilizing DL-based methods for microscopic image segmentation. Our codes, plugin, and dataset are available at https://github.com/MoriLabNU/Microscopic_Image_Segment_LUT.

DOI： 10.1007/978-3-031-77786-8_1

Scopus

CLSMI2T3: 3D CLSM Vasculature Volume Reconstruction from A Single 2D Slice by Off-Focal Plane Signal Using Synthetic Data

Wu Y., Menten M.J., Kreitner L., Kawamura S., Oda M., Hayashi Y., Takebe T., Rueckert D., Mori K.

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Vol. 15371 LNCS page： 108 - 118 2025

Publisher：Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

In this paper, we propose a novel framework for reconstructing 3D Confocal Laser Scanning Microscopy (CLSM) vasculature volumes from single 2D slices using synthetic and real CLSM data. CLSM is an imaging technique commonly used for in-vivo 3D imaging. However, the utility of 3D CLSM imaging is limited due to long acquisition times and phototoxicity caused by prolonged light exposure. We propose a novel solution to reconstruct a 3D volume from a 2D slice by off-focal plane signal using deep learning (DL). However, the limited availability of real 3D data has to be overcome to train such a 3D reconstruction model. Therefore, we propose a novel framework to effectively address the lack of 3D data for training a robust and accurate 3D reconstruction model by simulating and synthesizing CLSM volumes. Our framework consists of (1) a 3D CLSM volume simulation and synthesizing for training data and (2) a 3D CLSM volume reconstruction part. Experiments show that we can effectively reconstruct 3D CLSM vasculature volumes from single slices, even only using synthetic data. Furthermore, we will also release our CLSM Image of Vascular Organoid for REConstruction (CLSMI-VO-REC) dataset and code at https://github.com/MoriLabNU/3D_CLSM_Volume_Reconstruction.

DOI： 10.1007/978-3-031-77786-8_11

Scopus

Preliminary study of substantia nigra analysis by tensorial feature extraction Reviewed

Hayato Itoh, Masahiro Oda, Shinji Saiki, Koji Kamagata, Wataru Sako, Kei-ichi Ishikawa, Nobutaka Hattori, Shigeki Aoki, Kensaku Mori

International Journal of Computer Assisted Radiology and Surgery Vol. 19 ( 11 ) page： 2133 - 2142 2024.11

【放射線科と人工知能】脊椎・脊髄疾患の画像診断におけるAI利用の現状

伊藤定之, 中島宏彰, 世木直喜, 大内田隼, 小田昌宏, 山内一平, 大出幸史, 長谷康弘, 岡田裕也, 鏡味佑志朗, 森健策, 今釜史郎

臨床放射線 Vol. 69 ( 6 ) page： 787 - 792 2024.11

Language：Japanese Publisher：金原出版(株)

＜文献概要＞脊椎・脊髄疾患は,高齢化社会においてますます注目される分野であり,特に脊髄腫瘍や脊髄圧迫症などの重大な病態が含まれる。画像診断はこれらの疾患の検出と診断に不可欠であり,近年,人工知能(AI)技術が医療において急速に進展し,画像診断の効率と精度を向上させる手段として期待されている。本稿では,脊椎・脊髄疾患におけるAIの現状とその応用について,特に画像診断分野における具体的な利用例や技術的な進展を中心に紹介する。

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Skeleton-guided 3D convolutional neural network for tubular structure segmentation

Zhu, RY; Oda, M; Hayashi, Y; Kitasaka, T; Misawa, K; Fujiwara, M; Mori, K

INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY 2024.9

Language：English Publisher：International Journal of Computer Assisted Radiology and Surgery

Purpose: Accurate segmentation of tubular structures is crucial for clinical diagnosis and treatment but is challenging due to their complex branching structures and volume imbalance. The purpose of this study is to propose a 3D deep learning network that incorporates skeleton information to enhance segmentation accuracy in these tubular structures. Methods: Our approach employs a 3D convolutional network to extract 3D tubular structures from medical images such as CT volumetric images. We introduce a skeleton-guided module that operates on extracted features to capture and preserve the skeleton information in the segmentation results. Additionally, to effectively train our deep model in leveraging skeleton information, we propose a sigmoid-adaptive Tversky loss function which is specifically designed for skeleton segmentation. Results: We conducted experiments on two distinct 3D medical image datasets. The first dataset consisted of 90 cases of chest CT volumetric images, while the second dataset comprised 35 cases of abdominal CT volumetric images. Comparative analysis with previous segmentation approaches demonstrated the superior performance of our method. For the airway segmentation task, our method achieved an average tree length rate of 93.0%, a branch detection rate of 91.5%, and a precision rate of 90.0%. In the case of abdominal artery segmentation, our method attained an average precision rate of 97.7%, a recall rate of 91.7%, and an F-measure of 94.6%. Conclusion: We present a skeleton-guided 3D convolutional network to segment tubular structures from 3D medical images. Our skeleton-guided 3D convolutional network could effectively segment small tubular structures, outperforming previous methods.

DOI： 10.1007/s11548-024-03215-x

Web of Science

Scopus

PubMed

整形外科領域の画像診断技術の深化深層学習を用いたMRI運動器腫瘍診断

伊藤定之, 中島宏彰, 世木直喜, 大内田隼, 小田昌宏, 山内一平, 森田圭則, 大出幸史, 長谷康弘, 森健策, 今釜史郎

日本整形外科学会雑誌 Vol. 98 ( 8 ) page： S1732 - S1732 2024.9

Analysis of the performance of the CorneAI for iOS in the classification of corneal diseases and cataracts based on journal photographs.

Taki Y, Ueno Y, Oda M, Kitaguchi Y, Ibrahim OMA, Aketa N, Yamaguchi T

Scientific reports Vol. 14 ( 1 ) page： 15517 2024.7

Language：English Publisher：Scientific Reports

CorneAI for iOS is an artificial intelligence (AI) application to classify the condition of the cornea and cataract into nine categories: normal, infectious keratitis, non-infection keratitis, scar, tumor, deposit, acute primary angle closure, lens opacity, and bullous keratopathy. We evaluated its performance to classify multiple conditions of the cornea and cataract of various races in images published in the Cornea journal. The positive predictive value (PPV) of the top classification with the highest predictive score was 0.75, and the PPV for the top three classifications exceeded 0.80. For individual diseases, the highest PPVs were 0.91, 0.73, 0.42, 0.72, 0.77, and 0.55 for infectious keratitis, normal, non-infection keratitis, scar, tumor, and deposit, respectively. CorneAI for iOS achieved an area under the receiver operating characteristic curve of 0.78 (95% confidence interval [CI] 0.5–1.0) for normal, 0.76 (95% CI 0.67–0.85) for infectious keratitis, 0.81 (95% CI 0.64–0.97) for non-infection keratitis, 0.55 (95% CI 0.41–0.69) for scar, 0.62 (95% CI 0.27–0.97) for tumor, and 0.71 (95% CI 0.53–0.89) for deposit. CorneAI performed well in classifying various conditions of the cornea and cataract when used to diagnose journal images, including those with variable imaging conditions, ethnicities, and rare cases.

DOI： 10.1038/s41598-024-66296-3

Scopus

PubMed

Federated 3D multi-organ segmentation with partially labeled and unlabeled data

Zheng, Z; Hayashi, Y; Oda, M; Kitasaka, T; Misawa, K; Mori, K

INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY 2024.5

Language：English Publisher：International Journal of Computer Assisted Radiology and Surgery

Purpose: This paper considers a new problem setting for multi-organ segmentation based on the following observations. In reality, (1) collecting a large-scale dataset from various institutes is usually impeded due to privacy issues; (2) many images are not labeled since the slice-by-slice annotation is costly; and (3) datasets may exhibit inconsistent, partial annotations across different institutes. Learning a federated model from these distributed, partially labeled, and unlabeled samples is an unexplored problem. Methods: To simulate this multi-organ segmentation problem, several distributed clients and a central server are maintained. The central server coordinates with clients to learn a global model using distributed private datasets, which comprise a small part of partially labeled images and a large part of unlabeled images. To address this problem, a practical framework that unifies partially supervised learning (PSL), semi-supervised learning (SSL), and federated learning (FL) paradigms with PSL, SSL, and FL modules is proposed. The PSL module manages to learn from partially labeled samples. The SSL module extracts valuable information from unlabeled data. Besides, the FL module aggregates local information from distributed clients to generate a global statistical model. With the collaboration of three modules, the presented scheme could take advantage of these distributed imperfect datasets to train a generalizable model. Results: The proposed method was extensively evaluated with multiple abdominal CT datasets, achieving an average result of 84.83% in Dice and 41.62 mm in 95HD for multi-organ (liver, spleen, and stomach) segmentation. Moreover, its efficacy in transfer learning further demonstrated its good generalization ability for downstream segmentation tasks. Conclusion: This study considers a novel problem of multi-organ segmentation, which aims to develop a generalizable model using distributed, partially labeled, and unlabeled CT images. A practical framework is presented, which, through extensive validation, has proved to be an effective solution, demonstrating strong potential in addressing this challenging problem.

DOI： 10.1007/s11548-024-03139-6

Web of Science

Scopus

PubMed

A clinical assessment of three-dimensional-printed liver model navigation for thrice or more repeated hepatectomy based on a conversation analysis

Igami, T; Maehigashi, A; Nakamura, Y; Hayashi, Y; Oda, M; Yokoyama, Y; Mizuno, T; Yamaguchi, J; Onoe, S; Sunagawa, M; Watanabe, N; Baba, T; Kawakatsu, S; Mori, K; Miwa, K; Ebata, T

SURGERY TODAY 2024.4

Language：English Publisher：Surgery Today

Purposes: We performed a conversation analysis of the speech conducted among the surgical team during three-dimensional (3D)-printed liver model navigation for thrice or more repeated hepatectomy (TMRH). Methods: Seventeen patients underwent 3D-printed liver navigation surgery for TMRH. After transcription of the utterances recorded during surgery, the transcribed utterances were coded by the utterer, utterance object, utterance content, sensor, and surgical process during conversation. We then analyzed the utterances and clarified the association between the surgical process and conversation through the intraoperative reference of the 3D-printed liver. Results: In total, 130 conversations including 1648 segments were recorded. Utterance coding showed that the operator/assistant, 3D-printed liver/real liver, fact check (F)/plan check (Pc), visual check/tactile check, and confirmation of planned resection or preservation target (T)/confirmation of planned or ongoing resection line (L) accounted for 791/857, 885/763, 1148/500, 1208/440, and 1304/344 segments, respectively. The utterance’s proportions of assistants, F, F of T on 3D-printed liver, F of T on real liver, and Pc of L on 3D-printed liver were significantly higher during non-expert surgeries than during expert surgeries. Confirming the surgical process with both 3D-printed liver and real liver and performing planning using a 3D-printed liver facilitates the safe implementation of TMRH, regardless of the surgeon’s experience. Conclusions: The present study, using a unique conversation analysis, provided the first evidence for the clinical value of 3D-printed liver for TMRH for anatomical guidance of non-expert surgeons.

DOI： 10.1007/s00595-024-02835-9

Web of Science

Scopus

PubMed

Artificial intelligence-based diagnostic imaging system with virtual enteroscopy and virtual unfolded views to evaluate small bowel lesions in Crohn's disease.

Furukawa K, Oda M, Watanabe O, Nakamura M, Yamamura T, Maeda K, Mori K, Kawashima H

Revista espanola de enfermedades digestivas 2024.3

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Papers - ODA, Masahiro