The University of Tokyo   Graduate School of Agricultural and Life Sciences　Associate Professor

2007.4 - 2010.3

The University of Tokyo   Graduate School of Agricultural and Life Sciences　Associate Professor

2003.3 - 2007.3

Iowa State University   Department of Agronomy　Visiting Scientist

2001.5 - 2002.5

The University of Tokyo   Graduate School of Agricultural and Life Sciences　Assistant Professor

1996.4 - 2003.2

The University of Tokyo   Faculty of Agriculture　Assistant Professor

1995.12 - 1996.3

Japanese Society of Breeding   General affairs

2006.4 - 2008.3

International Society for Plant Anaerobiosis

Age-dependent analysis dissects the stepwise control of auxin-mediated lateral root development in rice. Reviewed International journal

Yamauchi, T., Tanaka, A., Nakazono, M. and Inukai, Y.

Plant Physiology   Vol. 194   page： 819 - 831   2024.2

Single-cell transcriptomic analysis of pea shoot development and cell-type-specific responses to boron deficiency. Reviewed International coauthorship International journal

Chen, X., Ru, Y., Takahashi, H., Nakazono, M., Shabala, S., Smith, S. and Yu, M.

Plant Journal   Vol. 117   page： 302 - 322   2024.1

Transcriptome analysis of rice root tips reveals auxin, gibberellin and ethylene signaling underlying nutritropism. Reviewed International journal

Yamazaki, K., Ohmori, Y., Takahashi, H. Toyoda, A., Sato, Y., Nakazono, M. and Fujiwara, T.

Plant and Cell Physiology   Vol. 65 ( 4 ) page： 671 - 679   2024.1

Outer apoplastic barriers in roots: prospects for abiotic stress tolerance. Reviewed International coauthorship International journal

Peralta Ogorek, L.L., de la Cruz Jiménez, J., Visser, E.J.W., Takahashi, H., Nakazono, M., Shabala, S. and Pedersen, O.

Functional Plant Biology   Vol. 51   page： FP23133   2024

Random regression for modeling soybean plant response to irrigation changes using time-series multispectral data. Reviewed International journal

Sakurai, K., Toda, Y., Hamazaki, K., Ohmori, Y., Yamasaki, Y., Takahashi, H., Takanashi, H., Tsuda, M., Tsujimoto, H., Kaga, A., Nakazono, M., Fujiwara, T. and Iwata, H.

Frontiers in Plant Science   Vol. 14   page： 1201806   2023.7

Triterpenoids in aerenchymatous phellem contribute to internal root aeration and waterlogging adaptability in soybeans. Reviewed International journal

Takahashi, H., Abo, C., Suzuki, H., Romsuk, J., Oi, T., Yanagawa, A., Gorai, T., Tomisaki, Y., Jitsui, M., Shimamura, S., Mori, H., Kaga, A., Ishimoto, M., Seki, H., Muranaka, T. and Nakazono, M.

New Phytologist   Vol. 239   page： 936 - 948   2023.6

The barrier to radial oxygen loss protects roots against hydrogen sulphide intrusion and its toxic effect. Reviewed International coauthorship International journal

Peralta Ogorek, L.L., Takahashi, H., Nakazono, M. and Pedersen, O.

New Phytologist   Vol. 238   page： 1825 - 1837   2023.4

Asymmetric auxin distribution establishes a contrasting pattern of aerenchyma formation in the nodal roots of Zea nicaraguensis during gravistimulation. Reviewed International journal

Ning, J., Yamauchi, T., Takahashi, H., Omori, F., Mano, Y. and Nakazono, M.

Frontiers in Plant Science   Vol. 14   page： 1133009   2023.4

Effects of irrigation on root growth and development of soybean: a 3-year sandy field experiment. Reviewed International journal

Bui, K.T., Naruse, T., Yoshida, H., Toda, Y., Ohmori, Y., Tsuda, M., Kaga, A., Yamasaki, Y., Tsujimoto, H., Ichihashi, Y., Yokota-Hirai, M., Fujiwara, T., Iwata, H., Matsuoka, M., Takahashi, H. and Nakazono, M.

Frontiers in Plant Science   Vol. 13   page： 1047563   2022.12

Tandemly duplicated genes encoding polygalacturonase inhibitors are associated with bruchid (Callosobruchus chinensis) resistance in moth bean (Vigna aconitifolia). Reviewed International coauthorship International journal

Rathnayaka, S., Kaewwongwal, A., Laosatit, K., Yimram, T., Lin, Y., Chen, X., Nakazono, M. and Somta, P.

Plant Science   Vol. 323   page： 111402   2022.10

Time-series multi-spectral imaging in soybean for improving biomass and genomic prediction accuracy. Reviewed International journal

Sakurai, K., Toda, Y., Kajiya-Kanegae, H., Omori, Y., Yamasaki, Y., Takahashi, H., Takanashi, H., Tsuda, M., Tsujimoto, H., Kaga, A., Nakazono, M., Fujiwara, T. and Iwata, H.

Plant Genome   Vol. 15   page： e20244   2022.6

Modeling-based age-dependent analysis reveals the net patterns of ethylene-dependent and -independent aerenchyma formation in rice and maize roots. Reviewed International journal

Yamauchi, T. and Nakazono, M.

Plant Science   Vol. 321   page： 111340   2022.5

Genomic prediction of green fraction dynamics in soybean using UAV observations. Reviewed International coauthorship International journal

Toda, Y., Sasaki, G., Ohmori, Y., Yamasaki, Y., Takahashi, H., Takanashi, H., Tsuda, M., Kajiya-Kanegae, H., Lopez-Lozano, R., Tsujimoto, H., Kaga, A., Nakazono, M., Fujiwara, T., Baret, F. and Iwata, H

Frontiers in Plant Science   Vol. 13   page： 828864   2022.3

Mechanisms of lysigenous aerenchyma formation under abiotic stress. Reviewed International journal

Yamauchi, T. and Nakazono, M.

Trends in Plant Science   Vol. 27   page： 13 - 15   2022.1

WUSCHEL-related homeobox family genes in rice control lateral root primordium size. Reviewed International coauthorship International journal

Kawai, T., Shibata, K., Akahoshi, R., Nishiuchi, S., Takahashi, H., Nakazono, M., Kojima, T., Nosaka-Takahashi, M., Sato, Y., Toyoda, A., Lucob-Agustin, N., Kano-Nakata, M., Suralta, R.R., Niones, J.M., Chen, Y., Siddique, K., Yamauchi, A. and Inukai, Y.

Proceedings of the National Academy of Sciences of the United States of America   Vol. 119   page： e2101846119   2022.1

Radial oxygen loss from plant roots – methods Reviewed International coauthorship International journal

Jiménez, JdlC., Pellegrini, E., Pedersen, O. and Nakazono, M.

Plants   Vol. 10   page： 2322   2021.10

Expression analysis of genes for cytochrome P450 CYP86 and glycerol-3-phosphate acyltransferase related to suberin biosynthesis in rice roots under stagnant deoxygenated conditions. Reviewed International journal

Nishiuchi, S., Watanabe, K., Sato, S., Takahashi, H. and Nakazono, M.

Plant Root   Vol. 15   page： 19 - 35   2021.6

Key root traits of Poaceae for adaptation to soil water gradients. Reviewed International coauthorship International journal

Yamauchi, T., Pedersen, O., Nakazono, M. and Tsutsumi, N.

New Phytologist   Vol. 229   page： 3133 - 3140   2021.3

Genetic regulation of root traits for soil flooding tolerance in genus Zea. Invited Reviewed International journal

Mano, Y. and Nakazono, M.

Breeding Science   Vol. 71   page： 30 - 39   2021.3

Dissection of root behavior to abiotic stimuli for breeding of climate-resilient crops International journal

Uga, Y. and Nakazono, M.

Breeding Science   Vol. 71 ( 1 ) page： 1 - 1   2021.3

Lateral roots, in addition to the adventitious roots, form a barrier to radial oxygen loss in Zea nicaraguensis and a chromosome segment introgression line in maize. Reviewed International coauthorship International journal

Pedersen, O., Nakayama, Y., Yasue, H., Kurokawa, Y., Takahashi, H., Floytrup, A.H., Omori, F., Mano, Y., Colmer, T.D. and Nakazono, M.

New Phytologist   Vol. 229   page： 94-105   2021.1

Regulation of root adaptive anatomical and morphological traits during low soil oxygen. Invited Reviewed International coauthorship International journal

Pedersen, O., Sauter, M., Colmer, T.D. and Nakazono, M.

New Phytologist   Vol. 229   page： 42-49   2021.1

Formation of a barrier to radial oxygen loss in L-type lateral roots of rice. Reviewed International journal

Noorrohmah, S., Takahashi, H. and Nakazono, M.

Plant Root   Vol. 14   page： 33-41   2020.12

Distance-to-time conversion using Gompertz model reveals age-dependent aerenchyma formation in rice roots. Reviewed International coauthorship International journal

Yamauchi, T., Nakazono, M., Inukai, Y. and Tsutsumi N.

Plant Physiology   Vol. 183   page： 1424-1427   2020.8

Differences in xylem development between Dutch and Japanese tomato (Solanum lycopersicum) correlate with cytokinin levels in hypocotyls. Reviewed International coauthorship International journal

Qi, X., Takahashi, H., Kawasaki, Y., Ohta, Y., Isozaki, M., Kojima, M., Takebayashi, Y., Sakakibara, H., Imanishi, S., Chen, X. and Nakazono, M.

Annals of Botany   Vol. 126   page： 315-322   2020.8

A role for auxin in ethylene-dependent inducible aerenchyma formation in rice roots. Reviewed International journal

Yamauchi, T., Tanaka, A., Tsutsumi, N., Inukai, Y. and Nakazono, M.

Plants   Vol. 9 ( 5 ) page： e610   2020.5

QTLs for constitutive aerenchyma from Zea nicaraguensis improve tolerance of maize to root-zone oxygen deficiency. Reviewed International coauthorship International journal

Gong, F., Takahashi, H., Omori, F., Wang, W., Mano, Y. and Nakazono, M.

Journal of Experimental Botany   Vol. 70   page： 6475-6487   2019.11

Fine control of aerenchyma and lateral root development through AUX/IAA and ARF-dependent auxin signaling. Reviewed International journal

Yamauchi, T., Tanaka, A., Inahashi, H., Nishizawa, N.K., Tsutsumi, N., Inukai, Y. and Nakazono, M.

Proceedings of the National Academy of Sciences of the United States of America   Vol. 116 ( 41 ) page： 20770-20775   2019.10

Genetic and tissue-specific RNA-sequencing analysis of self-compatible mutant TSC28 in Brassica rapa L. toward identification of a novel self-incompatibility factor. Reviewed International journal

Osaka M, Nabemoto M, Maeda S, Sakazono S, Masuko-Suzuki H, Ito K, Takada Y, Kobayashi I, Lim YP, Nakazono M, Fujii S, Murase K, Takayama S, Suzuki G, Suwabe K and Watanabe M

Genes & Genetic Systems   Vol. 94   page： 167-176   2019.8

Specification of the basal region identity after asymmetric zygotic division requires mitogen-activated protein kinase 6 in rice. Reviewed International journal

Ishimoto, K., Sonohara, S., Kaboshi-Kishi, M., Itoh, J., Hibara, K., Sato, Y., Watanabe, T., Abe, K., Miyao, A., Nosaka-Takahashi, M., Suzuki, T., Ta, N.K., Shimizu-Sato, S., Suzuki, T., Toyoda, A., Takahashi, H., Nakazono, M., Nagato, Y., Hirochika, H. and Sato, Y.

Development   Vol. 146   page： dev176305   2019.6

Rice acclimation to soil flooding: low concentrations of organic acids can trigger a barrier to radial oxygen loss in roots. Reviewed International coauthorship International journal

Colmer, T.D., Kotula, L., Malik, A.I., Takahashi, H., Konnerup, D., Nakazono, M. and Pedersen, O.

Plant, Cell & Environment   Vol. 42   page： 2183-2197   2019.4

Root cortex provides a venue for gas-space formation and is essential for plant adaptation to waterlogging. Reviewed International journal

Yamauchi, T., Abe, F., Tsutsumi, N. and Nakazono, M.

Frontiers in Plant Science   Vol. 10   page： e259   2019.3

Laser microdissection-based tissue specific transcriptome analyses reveals novel regulatory network of genes involved in heat-induced grain chalk in rice endosperm. Reviewed International coauthorship International journal

Ishimaru, T., Parween, S., Saito, Y., Shigemitsu, T., Yamakawa, H., Nakazono, M., Masumura, T., Nishizawa, N.K., Kondo, M. and Sreenivasulu, N.

Plant and Cell Physiology   Vol. 60   page： 626-642   2019.3

42 蛍光X線分析による迅速・簡便なダイズ葉のイオノーム解析（関東支部講演会）

大森 良弘, 岩田 洋佳, 藤原 徹, 山崎 清志, 津田 麻衣, 鐘ケ江 弘美, 戸田 悠介, 山崎 裕司, 辻本 壽, 加賀 秋人, 中園 幹生

日本土壌肥料学会講演要旨集   Vol. 65 ( 0 ) page： 258 - 258   2019

Sucrose supply from leaves is required for aerenchymatous phellem formation in hypocotyl of soybean under waterlogged conditions. Reviewed International coauthorship International journal

Takahashi, H., Qi, X., Shimamura, S., Yanagawa, A., Hiraga, S. and Nakazono, M.

Annals of Botany   Vol. 121   page： 723-731   2018.3

Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress. Reviewed International coauthorship International journal

Yamauchi, T., Colmer, T.D., Pedersen, O. and Nakazono, M.

Plant Physiology   Vol. 176   page： 1118-1130   2018.2

A major locus involved in the formation of the radial oxygen loss barrier in adventitious roots of teosinte Zea nicaraguensis is located on the short-arm of chromosome 3. Reviewed International coauthorship International journal

Watanabe, K., Takahashi, H., Sato, S., Nishiuchi, S., Omori, F., Malik, A.I., Colmer, T.D., Mano, Y. and Nakazono, M.

Plant, Cell & Environment   Vol. 40   page： 304-316   2017

Molecular bases for phyllomorph development in a one-leaf plant, Monophyllaea glabra (Gesneriaceae). Reviewed International journal

Ishikawa, N., Takahashi, H., Nakazono, M. and Tsukaya, H.

American Journal of Botany   Vol. 104   page： 233-240   2017

Anatomical and biochemical characterisation of a barrier to radial O2 loss in adventitious roots of two contrasting Hordeum marinum accessions. Reviewed International coauthorship International journal

Kotula, L., Schreiber, L., Colmer, T.D. and Nakazono, M.

Functional Plant Biology   Vol. 44   page： 845-857   2017

An NADPH oxidase RBOH functions in rice roots during lysigenous aerenchyma formation under oxygen-deficient conditions. Reviewed International journal

Yamauchi, T., Yoshioka, M., Fukazawa, A., Mori, H., Nishizawa, N.K., Tsutsumi, N., Yoshioka, H. and Nakazono, M.

Plant Cell   Vol. 29   page： 775-790   2017

Community recommendations on terminology and procedures used in flooding and low oxygen stress research Reviewed International journal

Sasidharan, R., Bailey-Serres, J., Ashikari, M., Atwell, B., Colmer, T.D., Fagerstedt, K., Fukao, T., Geigenberger, P., Hebelstrup, K., Hill, R.D., Holdsworth, M.J., Ismail, A.M., Licausi, F., Mustroph, A., Nakazono, M., Pedersen, O., Perata, P., Sauter, M., Shih, M.-C., Sorrell, B., Striker, G.G., van Dongen, J.T., Whelan, J., Xiao, S., Visser, E.J.W. and Voesenek, L.A.C.J.

New Phytologist   Vol. 214   page： 1403-1407   2017

METALLOTHIONEIN genes encoding ROS scavenging enzymes are down-regulated in the root cortex during inducible aerenchyma formation in rice. Reviewed International journal

Yamauchi, T., Fukazawa, A. and Nakazono, M.

Plant Signaling & Behavior   Vol. 12   page： e1388976   2017

Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5. Reviewed International journal

Matsuda, S., Takano, S., Nagasawa. H., Yoshikawa, S., Tokuji, Y., Yazaki, K., Nakazono, M., Takamure, I. and Kato, K.

Molecular Plant   Vol. 9   page： 417-427   2016

Ethylene-dependent aerenchyma formation in adventitious roots is regulated differently in rice and maize. Reviewed International journal

Yamauchi, T., Tanaka, A., Mori, H., Takamure, I., Kato, K. and Nakazono, M.

Plant, Cell & Environment   Vol. 39   page： 2145-2157   2016

Transcriptional regulatory mechanism of alcohol dehydrogenase 1-deficient mutant of rice for the cell survival under complete submergence. Reviewed International coauthorship International journal

Mohanty, B., Takahashi, H., de los Reyes, B.G., Wijaya, E., Nakazono, M. and Lee, D.Y.

Rice   Vol. 9   page： e51   2016

Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles. Reviewed International journal

Toyomasu, T., Usui, M., Sugawara, C., Kanno, Y., Sakai, A., Takahashi, H., Nakazono, M., Kuroda, M., Miyamoto, K., Morimoto, Y., Mitsuhashi, W., Okada, K., Yamaguchi, S. and Yamane, H.

Journal of Experimental Botany   Vol. 66   page： 369–376   2015

Transcript profiles in cortical cells of maize primary root during ethylene-induced lysigenous aerenchyma formation under aerobic conditions. Reviewed International journal

Takahashi, H., Yamauchi, T., Rajhi, I., Nishizawa, N.K. and Nakazono, M.

Annals of Botany   Vol. 115   page： 879-894   2015

Transcriptional characteristics and differences in Arabidopsis stigmatic papilla cells pre- and post-pollination. Reviewed International journal

Matsuda, T., Matsushima, M., Nabemoto, M., Osaka, M., Sakazono, S., Masuko-Suzuki, H., Takahashi, H., Nakazono, M., Iwano, M., Takayama, S., Shimizu, K.K., Okumura, K., Suzuki, G., Watanabe, M. and Suwabe, K.

Plant and Cell Physiology   Vol. 56   page： 663-673   2015

The rice RCN11 gene encodes β1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones. Reviewed International journal

Takano, S., Matsuda, S., Funabiki, A., Furukawa, J., Yamauchi, T., Tokuji, Y., Nakazono, M., Shinohara, Y., Takamure, I. and Kato, K.

Plant Science   Vol. 236   page： 75-88   2015

Ethylene biosynthesis is promoted by very-long-chain fatty acids during lysigenous aerenchyma formation in rice roots. Reviewed International journal

Yamauchi, T., Shiono, K., Nagano, M., Fukazawa, A., Ando, M., Takamure, I., Mori, H., Nishizawa, N.K., Kawai-Yamada, M., Tsutsumi, N., Kato, K. and Nakazono, M.

Plant Physiology   Vol. 169   page： 180-193   2015

Laser microdissection-based gene expression analysis in the aleurone layer and starchy endosperm of developing rice caryopses in the early storage phase. Reviewed International journal

Ishimaru, T. Ida, M., Hirose, S., Shimamura, S., Masumura, T., Nishizawa, N.K., Nakazono, M. and Kondo, M.

Rice   Vol. 8   page： e22   2015

Molecular cloning and expression analysis of the WEE1 and CCS52A genes in European pear (Pyrus communis L.) and their possible roles in a giant fruit mutant. Reviewed International journal

Hanada, T., Nashima, K., Kato, M., Takashina, T., Ikeda, K., Sakamoto, Y., Takahashi, H., Nakazono, M., Oikawa, A., Shiratake, K. and Isuzugawa, K.

Journal of Horticultural Science & Biotechnology   Vol. 90   page： 511-517   2015

Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water. Reviewed International coauthorship International journal

Takahashi, H., Greenway, H., Matsumura, H., Tsutsumi N. and Nakazono, M.

Annals of Botany   Vol. 113   page： 851-859   2014

Strigolactone and cytokinin act antagonistically in regulating rice mesocotyl elongation in darkness. Reviewed International journal

Hu, Z., Yamauchi, T., Yang, J., Jikumaru, Y., Tsuchida-Mayama, T., Ichikawa, H., Takamure, I., Nagamura, Y., Tsutsumi, N., Yamaguchi, S., Kyozuka J. and Nakazono M.

Plant and Cell Physiology   Vol. 55   page： 30-41   2014

Ethylene and reactive oxygen species are involved in root aerenchyma formation and adaptation of wheat seedlings to oxygen-deficient conditions. Reviewed International journal

Yamauchi, T., Watanabe, K., Fukazawa, A., Mori, H., Abe, F., Kawaguchi, K., Oyanagi, A. and Nakazono, M.

Journal of Experimental Botany   Vol. 65   page： 261-273   2014

Effects of organic acids on formation of the barrier to radial oxygen loss in roots of Hordeum marinum. Reviewed International coauthorship International journal

Kotula, L., Colmer, T.D. and Nakazono, M.

Functional Plant Biology   Vol. 41   page： 187-202   2014

Spatial transcriptomes of iron-deficient and cadmium-stressed rice. Reviewed International journal

Ogo, Y., Kakei, Y., Nakanishi-Itai, R., Kobayashi, T., Nakanishi, H., Takahashi, H., Nakazono, M and Nishizawa, N.K.

New Phytologist   Vol. 201   page： 781-794   2014

Biochemical and molecular characterization of rice (Oryza sativa L.) roots forming a barrier to radial oxygen loss. Invited Reviewed International journal

Kulichikhin, K., Yamauchi, T., Watanabe, K. and Nakazono, M.

Plant, Cell & Environment,   Vol. 37   page： 2406-2420   2014

Transcriptome analysis of flower receptacle of the European pear (Pyrus communis L.) `La France' and its giant fruit sport using next-generation sequencing technology. Reviewed International journal

Nashima, K., Terakami, S., Nishitani, C., Yamamoto, T., Habu, T., Takahashi, H., Nakazono, M., Isuzugawa, K., Hanada, T., Takashina, T., Matsumoto, S., Otagaki, S., Mori, H., Oikawa, A. and Shiratake, K.

Journal of Horticultural Science & Biotechnology   Vol. 89   page： 293-300   2014

Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Reviewed International coauthorship International journal

Shiono, K., Yamauchi, T, Yamazaki, S., Mohanty, B., Malik, A.I., Nagamura, Y., Nishizawa, N.K., Tsutsumi, N., Colmer, T.D. and Nakazono, M.

Journal of Experimental Botany   Vol. 65   page： 4795-4806   2014

RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa). Reviewed International journal

Shiono, K., Ando, M., Nishiuchi, S., Takahashi, H., Watanabe, K., Nakamura, M., Matsuo, Y., Yasuno, N., Yamanouchi, U., Fujimoto, M., Takanashi, H., Ranathunge, K., Franke, R., Shitan, N., Nishizawa, N.K., Takamure, I., Yano, M., Tsutsumi, N., Schreiber, L., Yazaki, K., Nakazono, M. and Kato, K.

Plant Journal   Vol. 80   page： 40-51   2014

Aerenchyma formation in crop species: a review. Invited Reviewed International journal

Yamauchi, T., Shimamura, S., Nakazono, M. and Mochizuki, T.

Field Crops Research   Vol. 152   page： 8-16   2013

Molecular evidence for phytosiderophore-induced improvement of iron nutrition of peanut intercropped with maize in calcareous soil. Reviewed International coauthorship International journal

Xiong, H., Kakei, Y., Kobayashi, T., Guo, X., Nakazono, M., Takahashi, H., Nakanishi, H., Shen, H., Zhang, F., Nishizawa, N.K. and Zuo, Y.

Plant, Cell & Environment   Vol. 36   page： 1888-1902   2013

Transcriptome analysis of developing ovules in rice isolated by laser microdissection. Reviewed International journal

Kubo, T., Fujita, M., Takahashi, H., Nakazono, M., Tsutsumi, N. and Kurata, N.

Plant and Cell Physiology   Vol. 54   page： 750-765   2013

Does suberin accumulation in plant roots contribute to waterlogging tolerance? Invited Reviewed International journal

Watanabe, K., Nishiuchi, S., Kulichikhin, K. and Nakazono M.

Frontiers in Plant Science   Vol. 4   page： e178   2013

Microarray analysis of gene expression patterns during fruit development in European pear (Pyrus communis). Reviewed International journal

Nashima, K., Shimizu, T., Nishitani, C., Yamamoto, T., Takahashi, H., Nakazono, M., Itai, A., Isuzugawa, K., Hanada, T., Takashina, T., Matsumoto, S., Otagaki, S., Oikawa, A. and Shiratake, K.

Scientia Horticulturae   Vol. 164   page： 466-473   2013

Transcriptome analysis of giant pear fruit with fruit-specific DNA reduplication on a mutant branch. Reviewed International journal

Nashima, K., Takahashi, H., Nakazono, M., Shimizu, T., Nishitani, C., Yamamoto, T., Itai, A., Isuzugawa, K., Hanada, T., Takashina, T., Kato, M., Matsumoto, S., Oikawa, A. and Shiratake, K.

Journal of the Japanese Society for Horticultural Science   Vol. 82   page： 301-311   2013

Cell type-specific transcriptome of Brassicaceae stigmatic papilla cells from a combination of laser microdissection and RNA sequencing. Reviewed International journal

Osaka, M., Matsuda, T., Sakazono, S., Masuko-Suzuki, H., Maeda, S., Sewaki, M., Sone, M., Takahashi, H., Nakazono, M., Iwano, M., Takayama, S., Shimizu, K.K.., Yano, K., Lim, Y.P., Suzuki, G., Suwabe, K. and Watanabe, M.

Plant and Cell Physiology   Vol. 54   page： 1894-1906   2013

Mechanisms for coping with submergence and waterlogging in rice. Invited Reviewed International journal

Nishiuchi, S., Yamauchi, T., Takahashi, H., Kotula, L. and Nakazono, M.

Rice   Vol. 5   page： e2   2012

Acquisition of aluminum tolerance by modification of a single gene in barley. Reviewed International journal

Fujii, M., Yokosho, K., Yamaji, N., Saisho, D., Yamane, M., Takahashi, H., Sato, K., Nakazono, M. and Ma, J.F.

Nature Commun.   Vol. 3   page： 713   2012

Genome-wide transcriptome dissection of the rice root system: Implications for developmental and physiological functions. Reviewed International journal

Takehisa, H., Sato, Y., Igarashi, M., Abiko, T., Antonio, B., Kamatsuki, K., Minami, H., Namiki, N., Inukai, Y., Nakazono, M. and Nagamura, Y.

Plant J.   Vol. 69   page： 126–140   2012

Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays). Reviewed International coauthorship International journal

Abiko, T., Kotula, L., Shiono, K., Malik, A.I., Colmer, T.D. and Nakazono, M.

Plant Cell Environ.   Vol. 35   page： 1618–1630   2012

Cell-type specific transcriptome analysis in nodules of Lotus japonicas. Reviewed International journal

Takanashi, K., Takahashi, H., Sakurai, N., Sugiyama, A., Shibata , D., Nakazono, M. and Yazaki, K.

Mol. Plant-Microbe Interact.   Vol. 25   page： 869-876   2012

AhNRAMP1 iron transporter is involved in iron acquisition in peanut. Reviewed International coauthorship International journal

Xiong, H., Kobayashi, T., Kakei, Y., Senoura, T., Nakazono, M., Takahashi, H., Nakanishi, H., Shen, H., Duan, P., Guo, X., Nishizawa, N.K. and Zuo, Y.

J. Exp. Bot.   Vol. 63   page： 4437–4446   2012

Screening of candidate genes associated with constitutive aerenchyma formation in adventitious roots of the teosinte Zea nicaraguensis. Reviewed International journal

Abiko, T., Obara, M., Abe, F., Kawaguchi, K., Oyanagi, A., Yamauchi, T. and Nakazono, M.

Plant Root   Vol. 6   page： 19-27   2012

Lysigenous aerenchyma formation in maize root is confined to cortical cells by regulation of genes related to generation and scavenging of reactive oxygen species. Reviewed International journal

Yamauchi, T., Rajhi, I., and Nakazono, M.

Plant Signal. Behav.   Vol. 6   page： 759-761   2011

Contrasting dynamics of radial O2-loss barrier induction and aerenchyma formation in rice roots of two lengths. Reviewed International coauthorship International journal

Shiono, K., Ogawa, S., Yamazaki, S., Isoda, H., Fujimura, T., Nakazono, M. and Colmer, T.D.

Annals of Botany   Vol. 107   page： 89–99   2011

Identification of genes expressed in maize root cortical cells during lysigenous aerenchyma formation using laser microdissection and microarray analyses. Reviewed International coauthorship International journal

Rajhi, I., Yamauchi, T., Takahashi, H., Nishiuchi, S., Shiono, K., Watanabe, R., Mliki, A., Nagamura, Y., Tsutsumi, N., Nishizawa, N.K. and Nakazono, M.

New Phytol.   Vol. 190   page： 351-368   2011

Cell division and cell elongation in the coleoptile of rice alcohol dehydrogenase 1-deficient mutant are reduced under complete submergence. Reviewed International journal

Takahashi, H., Saika, H., Matsumura, H., Nagamura, Y., Tsutsumi, N., Nishizawa, N.K. and Nakazono, M.

Annals of Botany   Vol. 108   page： 253-261   2011

Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays. Reviewed International journal

Aya, K., Suzuki, G., Suwabe, K., Hobo, T., Takahashi, H., Shiono, K., Yano, K., Tsutsumi, N., Nakazono, M., Nagamura, Y., Matsuoka, M. and Watanabe, M.

PLoS ONE   Vol. 6   page： e26162   2011

A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection. Reviewed International journal

Takahashi, H., Kamakura, H., Sato, Y., Shiono, K., Abiko, T., Tsutsumi, N., Nagamura, Y., Nishizawa, N.K. and Nakazono, M

J. Plant Res.   Vol. 123   page： 807–813   2010

Strigolactones negatively regulate mesocotyl elongation in rice during germination and growth in darkness. Reviewed International coauthorship International journal

Hu, Z., Yan, H., Yang, J., Yamaguchi, S., Maekawa, M., Takamure, I., Tsutsumi, N., Kyozuka, J. and Nakazono, M.

Plant Cell Physiol.   Vol. 51   page： 1136-1142   2010

Apple phloem cells contain some mRNAs transported over long distances. Reviewed International journal

Kanehira, A., Yamada, K., Iwaya, T., Tsuwamoto, R., Kasai, A., Nakazono, M. and Harada, T.

Tree Genet. Genomes   Vol. 6   page： 635-642   2010

Fusion of mitochondria in tobacco suspension cultured cells is dependent on the cellular ATP level but not on actin polymerization. Reviewed International journal

Wakamatsu, K., Fujimoto, M., Nakazono, M., Arimura, S. and Tsutsumi, N.

Plant Cell Rep.   Vol. 29   page： 1139-1145   2010

A receptor-like kinase, KLAVIER, mediates systemic regulation of nodulation and non-symbiotic shoot development in Lotus japonicus. International journal

Miyazawa, H., Oka-Kira, E., Sato, N., Takahashi, H., Wu, G. J., Sato, S., Hayashi, M., Betsuyaku, S., Nakazono, M., Tabata, S., Harada, K., Sawa, S., Fukuda, H. and Kawaguchi, M.

Development   Vol. 137   page： 4317-4325   2010

Arabidopsis dynamin-related proteins DRP3A and DRP3B are functionally redundant in mitochondrial fission but have distinct roles in peroxisomal fission. Reviewed International journal

Fujimoto, M., Arimura, S., Mano, S., Kondo, M., Saito, C., Ueda, T., Nakazono, M., Nakano, A., Nishimura, M. and Tsutsumi, T.

Plant J.   Vol. 58   page： 388-400   2009

Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings. Reviewed International journal

Inoue, H., Kobayashi, T., Nozoye, T., Takahashi, M., Kakei, Y., Suzuki, K., Nakazono, M., Nakanishi, H., Mori, S. and Nishizawa, N.K.

J. Biol. Chem.   Vol. 284   page： 3470-3479   2009

Formation of grain chalkiness and changes in water distribution in developing rice caryopses grown under high-temperature stress. Reviewed International journal

Ishimaru, T., Horigane, A.K., Ida, M., Iwasawa, N., San-oh, Y.A., Nakazono, M., Nishizawa, N.K., Masumura, T., Kondo, M. and Yoshida, M.

J. Cereal Sci.   Vol. 50   page： 166-174   2009

Nod factor/nitrate-induced CLE genes that drive HAR1-mediated systemic regulation of nodulation. Reviewed International journal

Okamoto, S., Ohnishi, E., Sato, S., Takahashi, H., Nakazono, M., Tabata, S. and Kawaguchi, M.

Plant Cell Physiol.   Vol. 50   page： 67-77   2009

Role of ethylene in acclimations to promote oxygen transport in roots of plants in waterlogged soils. Reviewed International coauthorship International journal

Shiono, K., Takahashi, H., Colmer, T.D. and Nakazono, M.

Plant Sci.   Vol. 175   page： 52-58   2008

Separated transcriptomes of male gametophyte and tapetum in rice: validity of a laser microdissection (LM) microarray. Reviewed International journal

Suwabe, K., Suzuki, G., Takahashi, H., Shiono, K., Endo, M., Yano, K., Fujita, M., Masuko, H., Saito, H., Fujioka, T., Kaneko, F., Kazama, T., Mizuta, Y., Kawagishi-Kobayashi, M., Tsutsumi, N., Kurata, N., Nakazono, M. and Watanabe, M.

Plant Cell Physiol.   Vol. 49   page： 1407-1416   2008

Arabidopsis dynamin-related protein DRP2B is co-localized with DRP1A on the leading edge of the forming cell plate. Reviewed International journal

Fujimoto, M., Arimura, S., Nakazono, M. and Tsutsumi, N.

Plant Cell Rep.   Vol. 27   page： 1581-1586   2008

Drought induction of Arabidopsis 9-cis-epoxycarotenoid dioxygenase occurs in vascular parenchyma cells. Reviewed International journal

Endo, A., Sawada, Y., Takahashi, H., Okamoto, M., Ikegami, K., Koiwai, H., Seo, M., Toyomasu, T., Mitsuhashi, W., Shinozaki, K., Nakazono, M., Kamiya, Y., Koshiba, T. and Nambara, E.

Plant Physiol.   Vol. 147   page： 1984-1993   2008

Arabidopsis ELM1 is required for the localization of dynamin-related protein DRP3A to mitochondrial fission sites. Reviewed International journal

Arimura, S., Fujimoto, M., Doniwa, Y., Kadoya, N., Nakazono, M., Sakamoto, W. and Tsutsumi, N.:

Plant Cell   Vol. 20   page： 1555-1566   2008

Various spatiotemporal expression profiles of anther-expressed genes in rice. Reviewed International journal

Hobo, T., Suwabe, K., Aya, K., Suzuki, G., Yano, K., Ishimizu, T., Fujita, M., Kikuchi, S., Hamada, K., Miyano, M., Fujioka, T., Kaneko, F., Kazama, T., Mizuta, Y., Takahashi, H., Shiono, K., Nakazono, M., Tsutsumi, N., Nagamura, Y., Kurata, N., Watanabe, M. and Matsuoka, M.

Plant Cell Physiol.   Vol. 49   page： 1417-1428   2008

Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies. Reviewed International coauthorship International journal

Ohtsu, K., Takahashi, H., Schnable, P.S. and Nakazono, M.

Plant Cell Physiol.   Vol. 48   page： 3-7   2007

Rice tillering dwarf mutant dwarf3 has increased leaf longevity during darkness-induced senescence or hydrogen peroxide-induced cell death. Reviewed International journal

Yan, H., Saika, H., Maekawa, M., Takamure, I., Tsutsumi, N., Kyozuka, J. and Nakazono, M.

Genes Genet. Syst.   Vol. 82   page： 361-366   2007

A method for obtaining high integrity RNA from developing aleurone cells and starchy endosperm in rice (Oryza sativa L.) by laser microdissection. Reviewed International journal

Ishimaru, T., Nakazono, M., Masumura, T., Abiko, M., San-oh, Y., Nishizawa, N. K. and Kondo, M.

Plant Sci.   Vol. 173   page： 321-326   2007

Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8´-hydroxylase in rice. International journal

Saika, H., Okamoto, M., Miyoshi, K., Kushiro, T., Shinoda, S., Jikumaru, Y., Fujimoto, M., Arikawa, T., Takahashi, H., Ando, M., Arimura, S., Miyao, A., Hirochika, H., Kamiya, Y., Tsutsumi, N., Nambara, E. and Nakazono, M.

Plant Cell Physiol.   Vol. 48   page： 287-298   2007

Isolation of MaDEF from Muscari armeniacum and analysis of its expression using laser microdissection. Reviewed International journal

Nakada, M., Komatsu, M., Ochiai, T., Ohtsu, K., Nakazono, M., Nishizawa, N.K., Nitta, K., Nishiyama, R., Kameya, T. and Kanno, A.

Plant Sci.   Vol. 170   page： 143-150   2006

Analysis of expression of genes for mitochondrial aldehyde dehydrogenase in maize during submergence and following re-aeration. Reviewed International journal

Meguro, N., Tsuji, H., Suzuki, Y., Tsutsumi, N., Hirai, A. and Nakazono, M.

Breed. Sci.   Vol. 56   page： 365-370   2006

Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice. Reviewed International journal

Tsuji, H., Saika, H., Tsutsumi, N., Hirai, A. and Nakazono, M.

Plant Cell Physiol.   Vol. 47   page： 995-1003   2006

GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers. Reviewed International journal

Tsuji, H., Aya, K., Ueguchi-Tanaka, M., Shimada, Y., Nakazono, M., Watanabe, R., Nishizawa, N.K., Gomi, K., Shimada, A., Kitano, H., Ashikari, M. and Matsuoka, M.

Plant J.   Vol. 47   page： 427-444   2006

A point mutation of Adh1 gene is involved in repression of coleoptile elongation under submergence in rice. Reviewed International journal

Saika, H., Matsumura, H., Takano, T., Tsutsumi, N. and Nakazono, M.

Breed Sci.   Vol. 56   page： 69-74   2006

Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+. Reviewed International journal

Ishimaru, Y., Suzuki, M., Tsukamoto, T., Suzuki, K., Nakazono, M., Kobayashi, T., Wada, Y., Watanabe, S., Matsuhashi, S., Takahashi, M., Nakanishi, H., Mori, S. and Nishizawa, N.K.

Plant J.   Vol. 45   page： 335-346   2006

cDNA microarray analysis of gene expression changes during pollination, pollen-tube elongation, fertilization, and early embryogenesis in rice pistils. Reviewed International journal

Yoshida, K.T., Endo, M., Nakazono, M., Fukuda, H., Demura, T., Tsuchiya, T. and Watanabe, M.

Sex. Plant Reprod.   Vol. 17   page： 269-275   2005

Anaconda, a new class of transposon belonging to the Mu superfamily, has diversified by acquiring host genes during rice evolution. Reviewed International journal

Ohtsu, K., Hirano, H., Tsutsumi, N., Hirai, A. and Nakazono, M.

Mol. Genet. Genomics   Vol. 274   page： 606-615   2005

A transposon-induced spontaneous mutation results in low β-amylase content in rice. Reviewed International journal

Saika, H., Nakazono, M., Ikeda, A., Yamaguchi, J., Masaki, S., Kanekatsu, M. and Nemoto, K.

Plant Sci.   Vol. 169   page： 239-244   2005

Global expression profiling applied to plant development. Reviewed International coauthorship International journal

Schnable, P.S., Hochholdinger, F. and Nakazono, M.

Curr. Opin. Plant Biol.   Vol. 7   page： 50-56   2004

A rice dynamin-like protein, OsDRP3A, is involved in mitochondrial fission. Reviewed International journal

Fujimoto, M., Arimura, S., Nakazono, M. and Tsutsumi, N.

Breed. Sci.   Vol. 54   page： 367-372   2004

Frequent fusion and fission of plant mitochondria with unequal nucleoid distribution. Reviewed International journal

Arimura, S., Yamamoto, J., Aida, G.P., Nakazono, M. and Tsutsumi, N.

Proc. Natl. Acad. Sci. USA   Vol. 101   page： 7805-7808   2004

Arabidopsis dynamin-like protein 2a (ADL2a), like ADL2b, is involved in plant mitochondrial division. Reviewed International journal

Arimura, S., Aida, G.P., Fujimoto, M., Nakazono, M. and Tsutsumi, N.

Plant Cell Physiol.   Vol. 45   page： 236-242   2004

The rice pyruvate decarboxylase 3 gene, which lacks introns, is transcribed in mature pollen. Reviewed International journal

Li, Y., Ohtsu, K., Nemoto, K., Tsutsumi, N., Hirai, A. and Nakazono, M.

J. Exp. Bot.   Vol. 55   page： 145-146   2004

Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b. Reviewed International journal

Tsuji, H., Tsutsumi, N., Sasaki, T., Hirai, A. and Nakazono, M.

Gene   Vol. 305   page： 195-204   2003

Induction of mitochondrial aldehyde dehydrogenase by submergence facilitates oxidation of acetaldehyde during re-aeration in rice. Reviewed International journal

Tsuji, H., Meguro, N., Suzuki, Y., Tsutsumi, N., Hirai, A. and Nakazono, M.

FEBS Lett.   Vol. 546   page： 369-373   2003

Laser capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: Identification of genes differentially expressed in epidermal cells or vascular tissues of maize. Reviewed International coauthorship International journal

Nakazono, M., Qiu, F., Borsuk, L.A. and Schnable, P.S.

Plant Cell   Vol. 15   page： 583-596   2003

The complete sequence of rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during evolution of flowering plants. Reviewed International journal

Notsu, Y., Masood, S., Nishikawa, T., Kubo, N., Akiduki, G., Nakazono, M., Hirai, A. and Kadowaki, K.

Mol. Gen. Genomics   Vol. 268   page： 434-445   2002

AOX1c, a novel rice gene for alternative oxidase; comparison with rice AOX1a and AOX1b. Reviewed International journal

Saika, H., Ohtsu, K., Hamanaka, S., Nakazono, M., Tsutsumi, N. and Hirai, A.

Genes Genet. Syst.   Vol. 77   page： 31-38   2002

ABA-independent expression of rice alternative oxidase genes under environmental stresses. Reviewed International journal

Ohtsu, K., Ito, Y., Saika, H., Nakazono, M., Tsutsumi, N. and Hirai, A.

Plant Biotechnol.   Vol. 19   page： 187-190   2002

Decreased transcription of a gene encoding putative mitochondrial aldehyde dehydrogenase in barley (Hordeum vulgare L.) under submerged conditions. Reviewed International journal

Meguro, N., Nakazono, M., Tsutsumi, N. and Hirai, A.

Plant Biotechnol.   Vol. 18   page： 223-228   2001

ATP synthesis inhibitors as well as respiratory inhibitors increase steady-state level of alternative oxidase mRNA in Arabidopsis thaliana. Reviewed International journal

Saisho, D., Nakazono, M., Tsutsumi, N. and Hirai, A.

J. Plant Physiol.   Vol. 158   page： 241-245   2001

Characterization and expression of the genes for cytochrome c oxidase subunit VIb (COX6b) from rice and Arabidopsis thaliana. Reviewed International journal

Ohtsu, K., Nakazono, M., Tsutsumi, N. and Hirai, A.

Gene   Vol. 264   page： 233-239   2001

The gene for alternative oxidase-2 (AOX2) from Arabidopsis thaliana consists of five exons unlike other AOX genes and is transcribed at an early stage during germination. Reviewed International journal

Saisho, D., Nakazono, M., Lee, K.H., Tsutsumi, N., Akita, S. and Hirai, A.

Genes Genet. Syst.   Vol. 76   page： 89-97   2001

Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions. Reviewed International journal

Nakazono, M., Tsuji, H., Li, Y., Saisho, D., Arimura, S., Tsutsumi, N. and Hirai, A.

Plant Physiol.   Vol. 124   page： 587-598   2000

Characterization of two cDNA clones encoding isozymes of the F1F0-ATPase inhibitor protein of rice mitochondria. Reviewed International journal

Nakazono, M., Imamura, T., Tsutsumi, N., Sasaki, T. and Hirai, A.

Planta   Vol. 210   page： 188-194   2000

Molecular and cellular characterizations of a cDNA clone encoding a novel isozyme of aldehyde dehydrogenase from rice. Reviewed International journal

Li, Y., Nakazono, M., Tsutsumi, N. and Hirai, A.

Gene   Vol. 249   page： 67-74   2000

Transcript levels of the nuclear-encoded respiratory genes in rice decrease by oxygen deprivation: evidence for involvement of calcium in expression of the alternative oxidase 1a gene. Reviewed International journal

Tsuji, H., Nakazono, M., Saisho, D., Tsutsumi, N. and Hirai, A.

FEBS Lett.   Vol. 471   page： 201-204   2000

AtUCP2: a Novel isoform of the mitochondrial uncoupling protein of Arabidopsis thaliana. Reviewed International journal

Watanabe, A., Nakazono, M., Tsutsumi, N. and Hirai, A.

Plant Cell Physiol.   Vol. 40   page： 1160-1166   1999

A novel plant nuclear gene coding for chloroplast ribosomal protein S9 has a transit peptide related to that of rice chloroplast ribosomal protein L12. Reviewed International journal

Arimura, S., Takusagawa, S., Hatano, S., Nakazono, M., Hirai, A. and Tsutsumi, N.

FEBS Lett.   Vol. 450   page： 231-234   1999

Characterization of a cDNA encoding a novel subunit for cytochrome c oxidase (COX6b) from rice. Reviewed International journal

Ohtsu, K., Hamanaka, S., Yamazaki, K., Nakazono, M. and Hirai, A.

Breed. Sci.   Vol. 49   page： 211-215   1999

Identification of cDNA encoding cytochrome c oxidase subunit 5c (COX5c) from rice: comparison of its expression with nuclear-encoded and mitochondrial-encoded COX genes. Reviewed International journal

Hamanaka, S., Ohtsu, K., Kadowaki, K., Nakazono, M. and Hirai, A.

Genes Genet. Syst.   Vol. 74   page： 71-75   1999

Transcription of plastid-derived tRNA genes in rice mitochondria. Reviewed International journal

Miyata, S., Nakazono, M. and Hirai, A.

Curr. Genet.   Vol. 34   page： 216-220   1998

A rapid and efficient method for the isolation of differentially expressed genes: Simplified differential display. Reviewed International journal

Nakazono, M. and Yoshida, K.T.

Plant Biotechnol.   Vol. 14   page： 187-190   1997

A chloroplast derived trnH gene is expressed in the mitochondrial genome of gramineous plants. Reviewed International journal

Kanno, A., Nakazono, M., Hirai, A. and Kameya, T.

Plant Mol. Biol.   Vol. 34   page： 353-356   1997

Characterization of the gene family for alternative oxidase from Arabidopsis thaliana. Reviewed International journal

Saisho, D., Nambara, E., Naito, S., Tsutsumi, N., Hirai, A. and Nakazono, M.

Plant Mol. Biol.   Vol. 35   page： 585-596   1997

Maintenance of chloroplast-derived sequences in the mitochondrial DNA of Gramineae. Reviewed International journal

Kanno, A., Nakazono, M., Hirai, A. and Kameya, T.

Curr. Genet.   Vol. 32   page： 413-419   1997

Transcript levels of tandem-arranged alternative oxidase genes in rice are increased by low temperature. Reviewed International journal

Ito, Y., Saisho, D., Nakazono, M., Tsutsumi, N. and Hirai, A.

Gene   Vol. 203   page： 121-129   1997

A chloroplast-derived sequence is utilized as a source of promoter sequences for the gene for subunit 9 of NADH dehydrogenase (nad9) in rice mitochondria. Reviewed International journal

Nakazono, M., Nishiwaki, S., Tsutsumi, N. and Hirai, A.

Mol. Gen. Genet.   Vol. 252   page： 371-378   1996

Multiple initiation sites for transcription of a gene for subunit 1 of F1-ATPase (atp1) in rice mitochondria. Reviewed International journal

Nakazono, M., Ishikawa, M., Yoshida, K.T., Tsutsumi, N. and Hirai, A.

Curr. Genet.   Vol. 29   page： 417-422   1996

The gene for a subunit of an ABC-type heme transporter is transcribed together with the gene for subunit 6 of NADH dehydrogenase in rice mitochondria. Reviewed International journal

Nakazono, M., Ito, Y., Tsutsumi, N. and Hirai, A.

Curr. Genet.   Vol. 29   page： 412-416   1996

RNA editing of transcripts of the gene for apocytochrome b (cob) in rice mitochondria. Reviewed International journal

Ito, Y., Nakazono, M., Kadowaki, K., Tsutsumi, N. and Hirai, A.

Genes Genet. Syst.   Vol. 71   page： 85-89   1996

Homologous recombination mediated by two palindromic repeated sequences in the mitochondrial genome of Oryza. Reviewed International journal

Nakazono, M., Kanno, A., Tsutsumi, N. and Hirai, A.

Theor. Appl. Genet.   Vol. 91   page： 1-8   1995

Structure of a gene for subunit 9 of NADH dehydrogenase (nad9) in rice mitochondria and RNA editing of its transcript. Reviewed International journal

Nishiwaki, S., Nakazono, M., Tsutsumi, N. and Hirai, A.

Plant Cell Physiol.   Vol. 36   page： 1135-1138   1995

A small repeated sequence contains the transcription initiation sites for both trnfM and rrn26 in rice mitochondria. Reviewed International journal

Nakazono, M., Tsutsumi, N., Sugiura, M. and Hirai, A.

Plant Mol. Biol.   Vol. 28   page： 343-346   1995

The CRTA motif is present in the promoters of mitochondrial genes of rice. Reviewed International journal

Nakazono, M., Tsutsumi, N. and Hirai, A.

Plant Sci.   Vol. 105   page： 227-234   1995

The rps3-rpl16-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters. Reviewed International journal

Nakazono, M., Itadani, H., Wakasugi, T., Tsutsumi, N., Sugiura, M. and Hirai, A.

Curr. Genet.   Vol. 27   page： 184-189   1995

Palindromic repeated sequences (PRSs) in the mitochondrial genome of rice: evidence for their insertion after divergence of the genus Oryza from the other Gramineae. Reviewed International journal

Nakazono, M., Kanno, A., Tsutsumi, N. and Hirai, A.

Plant Mol. Biol.   Vol. 24   page： 273-281   1994

Nucleotide sequence of a 28 kbp portion of rice mitochondrial DNA: the existence of many sequences that correspond to parts of mitochondrial genes in intergenic regions. Reviewed International journal

Itadani, H., Wakasugi, T., Sugita, M., Sugiura, M., Nakazono, M. and Hirai, A.

Plant Cell Physiol.   Vol. 35   page： 1239-1244   1994

Evolutionary variation in DNA sequences transferred from chloroplast genomes to mitochondrial genomes in the Gramineae. Reviewed International journal

Watanabe, N., Nakazono, M., Kanno, A., Tsutsumi, N. and Hirai, A.

Curr. Genet.   Vol. 26   page： 512-518   1994

Six percent of the mitochondrial genome in rice came from chloroplast DNA. Reviewed International journal

Hirai, A. and Nakazono, M.

Plant Mol. Biol. Reporter   Vol. 11   page： 98-100   1993

Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice. Reviewed International journal

Nakazono, M. and Hirai, A.

Mol. Gen. Genet.   Vol. 236   page： 341-346   1993

Genetic and physical maps and a clone bank of mitochondrial DNA from rice. Reviewed International journal

Iwahashi, M., Nakazono, M., Kanno, A., Sugino, K., Ishibashi, T. and Hirai, A.

Theor. Appl. Genet.   Vol. 84   page： 275-279   1992

イネ実生の嫌気応答：冠水下で伸びる謎に迫る. 「発芽生物学―種子発芽の生理・生態・分子機構― （種生物学会（吉岡俊人、清和研二）編）」

高橋宏和、中園幹生（ Role： Joint author）

文一総合出版  2009 

Abiotic stress. [Rice Biology in the Genomics Era (Hirai, H., Sasaki, T., Sano, Y. and Hirano, H. (eds))]

Ohnishi, T., Nakazono, M. and Tsutsumi, N.（ Role： Joint author）

Springer  2008 

Frequent DNA transfer among mitochondrial, plastid and nuclear genomes of rice during evolution. [Rice Biology in the Genomics Era (Hirai, H., Sasaki, T., Sano, Y. and Hirano, H. (eds)) ]

Nakazono, M. and Hirai, A.（ Role： Joint author）

Springer  2008 

植物は過湿土壌にどのように適応しているのか 「化学と生物」

塩野克宏、高橋宏和、中園幹生（ Role： Joint author）

学会出版センター  2008 

環境ストレスに応答したヒストン修飾の制御. 「植物のエピジェネティクス（細胞工学別冊 植物細胞工学24）」

辻 寛之、中園幹生（ Role： Joint author）

秀潤社  2008 

ヒストン修飾による植物の環境応答. 「化学と生物」

中園幹生、三好健太郎、松永幸大（ Role： Joint author）

学会出版センター  2007 

植物のヒストン翻訳後修飾研究の幕開け. 「化学と生物」

松永幸大、栗原大輔、中園幹生（ Role： Joint author）

学会出版センター  2006 

Involvement of aldehyde dehydrogenase in alleviation of post-anoxic injury in rice. [Abiotic stress tolerance in plants --Toward the improvement of global environment and food-- (Rai, A.K. and Takabe, T. (eds))]

Meguro, N., Tsuji, H., Tsutsumi, N., Nakazono, M. and Hirai, A.（ Role： Joint author）

Springer  2006 

酸化ストレスとミトコンドリア機能. 「二重膜オルガネラの遺伝学　（蛋白質核酸酵素（2005年11月号増刊））」

目黒直樹、最相大輔、中園幹生（ Role： Joint author）

共立出版  2005 

Gene structure and expression of alternative oxidases from Arabidopsis thaliana and Oryza sativa. [Plant mitochondria: from gene to function]

Nakazono, M., Saisho, D., Ito, Y., Hamanaka, S., Tsujii, T. and Hirai, A.（ Role： Joint author）

Backhuys Publishers  1998 

高等植物のミトコンドリアゲノム：ゲノム構造とその再編成 「蛋白質核酸酵素」

中園幹生、平井篤志（ Role： Joint author）

共立出版  1992 

イネのスベリン生合成経路に関与するNAM型転写因子の機能解析

西内俊策, 渡邊宏太郎, 山内卓樹, 高橋宏和, 塩野克宏, 槌田(間山)智子, 光田展隆, 高木優, 市川裕章, 中園幹生

育種学研究   Vol. 13   2011

イネの根における誘導的通気組織形成に関与する遺伝子の網羅的発現解析

山内卓樹, 塩野克宏, 塩野克宏, 安彦友美, RAJHI Imene, 高牟禮逸朗, 長村吉晃, 堤伸浩, 中園幹生, 加藤清明

育種学研究   Vol. 12   2010

マイクロアレイによるイネの根の通気組織形成に関わる分子機構の解析

山内卓樹, 塩野克宏, 塩野克宏, 安彦友美, RAJHI Imene, 高牟禮逸朗, 長村吉晃, 堤伸浩, 加藤清明, 中園幹生, 中園幹生

育種学研究   Vol. 12   2010

テオシント(Zea nicaraguensis)の耐湿性に関わる特性

安彦友美, 間野吉郎, 塩野克宏, 塩野克宏, 堤伸浩, 中園幹生

育種学研究   Vol. 12   2010

イネの耐湿性獲得に重要なRadial O₂ lossバリアの形成組織における網羅的遺伝子発現解析

塩野克宏, 塩野克宏, AL IMRAN Malik, 山崎聡, 西澤直子, 西澤直子, 長村吉晃, 堤伸浩, COLMER TIMOTHY D., 中園幹生

育種学研究   Vol. 12   2010

Genetic and physiological analyses of root traits for internal aeration of plants under flooded soil conditions Invited

Mikio Nakazono

Anmeldung zu einem Vortrag im Rahmen des Botanischen Kolloquiums  2019.5.17 

Root traits that determine waterlogging resilience in rice and maize Invited International conference

Mikio Nakazono

Keystone Symposia Conference - Climate Change-Linked Stress Tolerance in Plants   2019.5.15 

Characterization of the root traits for internal aeration of rice under flooded soil conditions Invited International conference

Mikio Nakazono

16th International Symposium on Rice Functional Genomics   2018.9.5 

Genetic and physiological analyses of the root traits for internal aeration of crops under flooded soil conditions Invited

Mikio Nakazono

International Symposium on Crop Roots and Rhizosphere Interactions  2017.10.10 

The roles of ethylene and auxin in constitutive lysigenous aerenchyma formation in rice root International conference

Mikio Nakazono

12th International Society for Plant Anaerobiosis Conference  2016.9.7 

遺伝型・表現型が支配する水稲根圏の微生物食物連鎖構造と機能

Grant number：20H02887  2020.4 - 2023.3

日本学術振興会  科学研究費補助金  基盤研究（B）

村瀬 潤（研究代表者）、中園幹生、土井 一行、 西内 俊策

酸素漏出バリア形成機構の解明及びトウモロコシの耐湿性向上への寄与の検証

Grant number：18H02175  2018.4 - 2021.3

日本学術振興会  科学研究費補助金  基盤研究（B）

中園幹生（研究代表者）、間野吉郎、高溝 正

Molecular mechanism of salt removal ability in rice leaf sheath and proposal of new method to improve salt tolerance

Grant number：16K14836  2016.4 - 2019.3

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Challenging Exploratory Research

Mitsuya Shiro, Nakazono Mikio, Takahashi Hirokazu, cartagena Joyce, Ismail Abdelbagi M., Marjorie de Ocampo

Understanding mechanism of formation of radial oxygen loss barrier in maize and teosinte

Grant number：15H04434  2015.4 - 2018.3

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

Nakazono Mikio

Identification of leaf-derived signal for inducing the secondary aerenchyma formation in soybean

Grant number：25660003  2013.4 - 2015.3

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Challenging Exploratory Research

NAKAZONO Mikio

ダイズの耐湿性強化に寄与する二次通気組織の形成機構の解明

Grant number：12F02394  2012.4 - 2016.3

日本学術振興会  科学研究費助成事業  特別研究員奨励費

中園 幹生, QI XIAOHUA, QI Xiaohua, QI X., 中園 幹生, QI XIAOHUA, QI Xiaohua, QI X.

Developing agronomy best practice to optimize sustainable crop production system in flood-prone area of Asia

Grant number：24405021  2012.4 - 2016.3

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

Sakagami Jun-Ichi, Ehara Hiroshi, Shu Tongha, Nakazono Mikio, Hatta Tamao, Inukai Yoshiaki, Akihiko Kamoshita, Kawaguchi Kentaro

Studies on evolution and functional differentiation of diterpene cyclase genes in rice.

Grant number：24580155  2012.4 - 2015.3

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

TOYOMASU Tomonobu, OKADA Kazunori, KURODA Masaharu, NAKAZONO Mikio

Analysis of transporters and transcription factors controlling suberization in Casparian strip in rice

Grant number：23380004  2011.4 - 2014.3

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

NAKAZONO Mikio

作物の耐湿性強化に寄与する根への効率的な酸素供給機構の解明

Grant number：11F01082  2011 - 2013

日本学術振興会  科学研究費助成事業 特別研究員奨励費  特別研究員奨励費

中園 幹生, KULICHIKHIN Konstantin

Analysis of proteins specifically produced in the tissues during aerenchyma formation in maize

Grant number：23658008  2011 - 2012

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Challenging Exploratory Research

NAKAZONO Mikio

Genetic engineering of chloroplast genome using a large-chloroplast mutant in rice

Grant number：22380007  2010 - 2012

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

SAKAMOTO Wataru, NAKAZONO Mikio

作物の耐湿性向上に関わる根の酸素漏洩バリア形成の機構解明

Grant number：10F00095  2010 - 2011

日本学術振興会  科学研究費助成事業 特別研究員奨励費  特別研究員奨励費

中園 幹生, KOTULA Lukasz

Mechanism and function of endocytosis in sucrose accumulation of plant cells

Grant number：21248002  2009 - 2011

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (A)

TSUTSUMI Nobuhiro, NAKAZONO Mikio, ARIMURA Shin-ichi

Molecular studies on the self-incompatibility systems in the Brassicaceae and the Solanaceae

Grant number：21248014  2009 - 2011

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (A)

TAKAYAMA Seiji, HIRANO Yoshinori, MAESHIMA Masayoshi, NAGAI Takeharu, NAKAZONO Mikio, KURATA Nori

細胞質雄性不稔系統を用いたミトコンドリアから核へのシグナル伝達機構の解明

Grant number：08F08423  2008 - 2010

日本学術振興会  科学研究費助成事業 特別研究員奨励費  特別研究員奨励費

中園 幹生, YANG Jing-Hua

Dynamics of mitochondria in the reproduction strategy of higher plants

Grant number：18075005  2006 - 2010

Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research on Priority Areas

TSUTSUMI Nobuhiro