Updated on 2024/03/29

写真a

 
SUGIYAMA Yuki
 
Organization
Institute for Advanced Research Designated assistant professor
Graduate School of Science Designated assistant professor
Title
Designated assistant professor

Degree 1

  1. 博士(理学) ( 2019.3   東京大学 ) 

Research Interests 1

  1. A. thaliana, Vascular tissue, Live cell imaging

Research History 4

  1. Nagoya University   IAR   Designated assistant professor

    2023.4

  2. University of Cambridge   Sainsbury Laboratory   HFSPO Fellow

    2021.10 - 2023.3

  3. University of Cambridge   Sainsbury Laboratory   JSPS Overseas Research Fellow

    2020.4 - 2020.10

  4. National Institute of Genetics   Department of Gene Function and Phenomics   JSPS Research Fellow PD

    2019.4 - 2020.3

Professional Memberships 2

  1. THE BOTANICAL SOCIETY OF JAPAN

    2014.9

  2. THE JAPANESE SOCIETY OF PLANT PHYSIOLOGISTS

    2014.3

Awards 4

  1. Long-Term Fellowship

    2021.4   The International Human Frontier Science Program Organization  

  2. BSJ Young Botanist Prize

    2020.9   The Botanical Society of Japan  

  3. Inoue Research Award for Young Scientists

    2020.2   Inoue Foundation for Science  

  4. Research Award for Ph.D. Students

    2019.3   Graduate School of Science, The University of Tokyo  

 

Papers 6

  1. Confined-microtubule assembly shapes three-dimensional cell wall structures in xylem vessels

    Sasaki, T; Saito, K; Inoue, D; Serk, H; Sugiyama, Y; Pesquet, E; Shimamoto, Y; Oda, Y

    NATURE COMMUNICATIONS   Vol. 14 ( 1 ) page: 6987   2023.11

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    Language:English   Publisher:Nature Communications  

    Properly patterned deposition of cell wall polymers is prerequisite for the morphogenesis of plant cells. A cortical microtubule array guides the two-dimensional pattern of cell wall deposition. Yet, the mechanism underlying the three-dimensional patterning of cell wall deposition is poorly understood. In metaxylem vessels, cell wall arches are formed over numerous pit membranes, forming highly organized three-dimensional cell wall structures. Here, we show that the microtubule-associated proteins, MAP70-5 and MAP70-1, regulate arch development. The map70-1 map70-5 plants formed oblique arches in an abnormal orientation in pits. Microtubules fit the aperture of developing arches in wild-type cells, whereas microtubules in map70-1 map70-5 cells extended over the boundaries of pit arches. MAP70 caused the bending and bundling of microtubules. These results suggest that MAP70 confines microtubules within the pit apertures by altering the physical properties of microtubules, thereby directing the growth of pit arches in the proper orientation. This study provides clues to understanding how plants develop three-dimensional structure of cell walls.

    DOI: 10.1038/s41467-023-42487-w

    Web of Science

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  2. Secondary cell wall patterning—connecting the dots, pits and helices

    Huizhen Xu, Alessandro Giannetti, Yuki Sugiyama, Wenna Zheng, René Schneider, Yoichiro Watanabe, Yoshihisa Oda, Staffan Persson

    Open Biology   Vol. 12 ( 5 )   2022.5

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    Publishing type:Research paper (scientific journal)   Publisher:The Royal Society  

    All plant cells are encased in primary cell walls that determine plant morphology, but also protect the cells against the environment. Certain cells also produce a secondary wall that supports mechanically demanding processes, such as maintaining plant body stature and water transport inside plants. Both these walls are primarily composed of polysaccharides that are arranged in certain patterns to support cell functions. A key requisite for patterned cell walls is the arrangement of cortical microtubules that may direct the delivery of wall polymers and/or cell wall producing enzymes to certain plasma membrane locations. Microtubules also steer the synthesis of cellulose—the load-bearing structure in cell walls—at the plasma membrane. The organization and behaviour of the microtubule array are thus of fundamental importance to cell wall patterns. These aspects are controlled by the coordinated effort of small GTPases that probably coordinate a Turing's reaction–diffusion mechanism to drive microtubule patterns. Here, we give an overview on how wall patterns form in the water-transporting xylem vessels of plants. We discuss systems that have been used to dissect mechanisms that underpin the xylem wall patterns, emphasizing the VND6 and VND7 inducible systems, and outline challenges that lay ahead in this field.

    DOI: 10.1098/rsob.210208

    Other Link: https://royalsocietypublishing.org/doi/full-xml/10.1098/rsob.210208

  3. Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization

    Pawel Roszak, Jung-ok Heo, Bernhard Blob, Koichi Toyokura, Yuki Sugiyama, Maria Angels de Luis Balaguer, Winnie W. Y. Lau, Fiona Hamey, Jacopo Cirrone, Ewelina Madej, Alida M. Bouatta, Xin Wang, Marjorie Guichard, Robertas Ursache, Hugo Tavares, Kevin Verstaen, Jos Wendrich, Charles W. Melnyk, Yoshihisa Oda, Dennis Shasha, Sebastian E. Ahnert, Yvan Saeys, Bert De Rybel, Renze Heidstra, Ben Scheres, Guido Grossmann, Ari Pekka Mähönen, Philipp Denninger, Berthold Göttgens, Rosangela Sozzani, Kenneth D. Birnbaum, Yrjö Helariutta

    Science   Vol. 374 ( 6575 ) page: 1577 - +   2021.12

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:American Association for the Advancement of Science (AAAS)  

    DOI: 10.1126/science.aba5531

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  4. A Rho-actin signaling pathway shapes cell wall boundaries in Arabidopsis xylem vessels. Reviewed International journal

    Yuki Sugiyama, Yoshinobu Nagashima, Mayumi Wakazaki, Mayuko Sato, Kiminori Toyooka, Hiroo Fukuda, Yoshihisa Oda

    Nature communications   Vol. 10 ( 1 ) page: 468 - 468   2019.1

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    Language:English  

    Patterned cell wall deposition is crucial for cell shapes and functions. In Arabidopsis xylem vessels, ROP11 GTPase locally inhibits cell wall deposition through microtubule disassembly, inducing pits in cell walls. Here, we show that an additional ROP signaling pathway promotes cell wall growth at pit boundaries. Two proteins, Boundary of ROP domain1 (BDR1) and Wallin (WAL), localize to pit boundaries and regulate cell wall growth. WAL interacts with F-actin and promotes actin assembly at pit boundaries while BDR1 is a ROP effector. BDR1 interacts with WAL, suggesting that WAL could be recruited to the plasma membrane by a ROP-dependent mechanism. These results demonstrate that BDR1 and WAL mediate a ROP-actin pathway that shapes pit boundaries. The study reveals a distinct machinery in which two closely associated ROP pathways oppositely regulate cell wall deposition patterns for the establishment of tiny but highly specialized cell wall domains.

    DOI: 10.1038/s41467-019-08396-7

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  5. A Novel Plasma Membrane-Anchored Protein Regulates Xylem Cell-Wall Deposition through Microtubule-Dependent Lateral Inhibition of Rho GTPase Domains Reviewed

    Yuki Sugiyama, Mayumi Wakazaki, Kiminori Toyooka, Hiroo Fukuda, Yoshihisa Oda

    CURRENT BIOLOGY   Vol. 27 ( 16 ) page: 2522 - +   2017.8

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:CELL PRESS  

    Spatial control of cell-wall deposition is essential for determining plant cell shape [1]. Rho-type GTPases, together with the cortical cytoskeleton, play central roles in regulating cell-wall patterning [2]. In meta-xylem vessel cells, which are the major components of xylem tissues, active ROP11 Rho GTPases form oval plasma membrane domains that locally disrupt cortical microtubules, thereby directing the formation of oval pits in secondary cell walls [3-5]. However, the regulatory mechanism that determines the planar shape of active Rho of Plants (ROP) domains is still unknown. Here we show that IQD13 associates with cortical microtubules and the plasma membrane to laterally restrict the localization of ROP GTPase domains, thereby directing the formation of oval secondary cell-wall pits. Loss and overexpression of IQD13 led to the formation of abnormally round and narrow secondary cell-wall pits, respectively. Ectopically expressed IQD13 increased the presence of parallel cortical microtubules by promoting microtubule rescue. A reconstructive approach revealed that IQD13 confines the area of active ROP domains within the lattice of the cortical microtubules, causing narrow ROP domains to form. This activity required the interaction of IQD13 with the plasma membrane. These findings suggest that IQD13 positively regulates microtubule dynamics as well as their linkage to the plasma membrane, which synergistically confines the area of active ROP domains, leading to the formation of oval secondary cell-wall pits. This finding sheds light on the role of microtubule-plasma membrane linkage as a lateral fence that determines the planar shape of Rho GTPase domains.

    DOI: 10.1016/j.cub.2017.06.059

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  6. Novel Coiled-Coil Proteins Regulate Exocyst Association with Cortical Microtubules in Xylem Cells via the Conserved Oligomeric Golgi-Complex 2 Protein Reviewed

    Yoshihisa Oda, Yuki Iida, Yoshinobu Nagashima, Yuki Sugiyama, Hiroo Fukuda

    PLANT AND CELL PHYSIOLOGY   Vol. 56 ( 2 ) page: 277 - 286   2015.2

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:OXFORD UNIV PRESS  

    Xylem vessel cells develop secondary cell walls in distinct patterns. Cortical microtubules are rearranged into distinct patterns and regulate secondary cell wall deposition; however, it is unclear how exocytotic membrane trafficking is linked to cortical microtubules. Here, we show that the novel coiled-coil proteins vesicle tethering 1 (VETH1) and VETH2 recruit EXO70A1, an exocyst subunit essential for correct patterning of secondary cell wall deposition, to cortical microtubules via the conserved oligomeric Golgi complex (COG) 2 protein. VETH1 and VETH2 encode an uncharacterized domain of an unknown function designated DUF869, and were preferentially up-regulated in xylem cells. VETH1-green fluorescent protein (GFP) and VETH2-GFP co-localized at novel vesicle-like small compartments, which exhibited microtubule plus-end-directed and end-tracking dynamics. VETH1 and VETH2 interacted with COG2, and this interaction promoted the association between cortical microtubules and EXO70A1 These results suggest that the VETH-COG2 complex ensures the correct secondary cell wall deposition pattern by recruiting exocyst components to cortical microtubules.

    DOI: 10.1093/pcp/pcu197

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Presentations 3

  1. S03-3 Exploring autolytic mechanisms of sieve elements with an improved phloem induction system Invited

    Yuki Sugiyama, Yoshihisa Oda

    The 65th Annual Meeting of the Japanese Society of Plant Physiologists  2024.3.17 

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    Language:English   Presentation type:Symposium, workshop panel (nominated)  

  2. P8 篩要素分化系におけるオルガネラ分解の解析

    杉山友希, 小田祥久

    植物細胞骨格研究会2023  2023.9 

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    Presentation type:Poster presentation  

  3. PO-649 Revealing autolytic mechanisms of sieve elements by an improved induction system

    Yuki Sugiyama, Ilya Belevich, Satoshi Fujita, Kaori Furuta, Bernhard Blob, Eija Jokitaro, Sebastian Schornack, Yoshihisa Oda, Ykä Herariutta

    The 33rd International Conference on Arabidopsis Research  2023.6 

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    Language:English   Presentation type:Poster presentation  

KAKENHI (Grants-in-Aid for Scientific Research) 3

  1. 新規分化誘導系によって実現する篩要素のセルバイオロジー

    Grant number:23K19366  2024.4 - 2026.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Early-Career Scientists

  2. 新規分化誘導系による篩要素の選択的自己分解機構の解明

    Grant number:23K19366  2023.8 - 2025.3

    科学研究費助成事業  研究活動スタート支援

    杉山 友希

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    Authorship:Principal investigator 

    Grant amount:\2860000 ( Direct Cost: \2200000 、 Indirect Cost:\660000 )

    篩管の構成単位である篩要素は、光合成産物等の輸送に適した構造と成るために細胞質やオルガネラ、細胞壁の一部までを失う。しかし、この劇的な変化の分子機構はほとんど明らかになっていない。その主な原因は、篩要素は細胞サイズが小さくかつ組織の深くに位置するために、明瞭なライブイメージングが困難なことにある。私は、VISUALと呼ばれる手法を独自に改良し、シロイヌナズナの胚軸に大きくて観察しやすい篩要素を形成させることに成功した。本研究では、この独自の分化誘導系の使用を本格化させ、篩要素における細胞質・オルガネラ分解の分子基盤を解明する。

  3. 細胞膜ドメインの制御:新規微小管付随タンパク質が細胞の形態形成に担う役割の解明

    Grant number:18J12667  2018.4 - 2020.3

    Grant-in-Aid for JSPS Fellows