Papers - OTA Motonori
-
IDEAL: intrinsically disordered proteins with extensive annotations and literature
S. Fukuchi, S. Sakamoto, Y. Nobe, SD. Murakami, T. Amemiya, K. Hosoda, R. Koike, H. Hiroaki, M. Ota
Nucleic Acids Res. page: in press 2012
-
SAHG, a comprehensive database of predicted structures of all human proteins Reviewed
C. Motono, J. Nakata, R. Koike, K. Shimizu, M. Shirota, T. Amemiya, K. Tomii, N. Nagano, N. Sakaya, K. Misoo, M, Sato, A. Kidera, H. Hiroaki, T. Shirai, K. Kinoshita, T. Noguchi, M. Ota
Nucleic Acids Res. Vol. 39 page: D487 2011
-
Cover and spacer insertions: small non-hydrophobic accessories that assist protein oligomerization
H. Nishi, R. Koike, M. Ota
Proteins Vol. 79 page: 2372-2379 2011
-
Actin capping protein and its inhibitor CARMIL: how intrinsically disordered regions function Reviewed
S. Takeda, R. Koike, Y. Nitanai, S. Minakata, Y. Maéda, M. Ota
Phys. Biol. Vol. 8 page: 035005 2011
-
Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design Reviewed
Y. Matsuura, M. Ota, T. Tanaka, M. Takehira, K. Ogasahara, B. Bagautdinov, N. Kunishima, K. Yutani
J. Biochem. Vol. 148 page: 449-458 2010
-
Two distinct mechanisms for actin capping proteinregulationTwo distinct mechanisms for actin capping proteinregulation- steric and allosteric inhibitionsteric and allosteric inhibition Reviewed
S. Takeda, S. Minakata, R. Koike, I. Kawahata, A. Narita, M. Kitazawa, M. Ota, T.Yamakuni, Y. Maéda, Y. Nitanai
PLos Biol. Vol. 8 page: e1000416 2010
-
Amino acid substitutions at protein-protein interfaces that modulate the oligomeric state Reviewed
H. Nishi, M. Ota
Proteins Vol. 78 page: 1563-1574 2010
-
Alteration of oligomeric state and domain architecture is essential for functional transformation between transferase and hydrolase with the same scaffold Reviewed
R. Koike, A. Kidera, M. Ota
Protein Sci. Vol. 18 page: 2060-2066 2009
-
An evaluation of minimal cellular functions to sustain a bacterial cell Reviewed
Y. Azuma, M. Ota
BMC Syst. Biol. Vol. 3 page: 111 2009
-
An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories Reviewed
H. Sun, H. Ferhatosmanoglu, M. Ota, Y. Wang
BMC Bioinformatics Vol. 9 page: 344 2008
-
Protein structural change upon ligand binding correlates with enzymatic reaction mechanism Reviewed
R. Koike, T. Amemiya, M. Ota, A. Kidera
J. Mol. Biol. Vol. 379 page: 397-401 2008
-
Unfolding pathways of goat α-lactalbumin as revealed in multiple alignment of molecular dynamics trajectories Reviewed
T. Oroguchi, M. Ikeguchi, M. Ota, K. Kuwajima and A. Kidera
J. Mol. Biol. Vol. 371 page: 1354-64 2007
-
Enhanced partial order curve comparison over multiple protein folding trajectories Reviewed
H. Sun, H. Ferhatosmanoglu, M. Ota, Y. Wang
Comput. Syst. Bioinformatics. Conf. Vol. 6 page: 299-310 2007
-
A hyperthermophilic protein acquires function at the cost of stability Reviewed
A. Mukaiyama, M. Haruki, M. Ota, Y. Koga, K. Takano and S. Kanaya
Biochemistry Vol. 24 page: 12673-12679 2006
-
Stabilization of E. coli ribonuclease HI by the 'stability profile of mutant protein' (SPMP)-inspired random and non-random mutagenesis Reviewed
M. Haruki, Y. Saito, M. Ota, K. Nishikawa, S. Kanaya
J. Biotech. Vol. 25 page: 512-522 2006
-
Design of λ Cro fold: solution structure of a monomeric variant of the de novo protein Reviewed
Y. Isogai, Y. Ito, T. Ikeya, Y. Shiro, M. Ota
J. Mol. Biol. Vol. 354 page: 801-814 2005
-
P-cats: Prediction of catalytic residues in proteins from the tertiary structures Reviewed
K. Kinoshita and M. Ota
Bioinformatics Vol. 21 page: 3570-3571 2005
-
Stabilization mechanism of the tryptophan synthase alpha-subunit from Thermus thermophilus HB8: X-ray crystallographic analysis and calorimetry Reviewed
Y. Asada, M. Sawano, K. Ogasahara, J. Nakamura, M. Ota, C. Kuroishi, M. Sugahara, K. Yutani, N. Kunishima
J Biochem (Tokyo) Vol. 138 page: 343-353 2005
-
Phylogeny of protein-folding trajectories reveals a unique pathway to native structure Reviewed
M. Ota, M. Ikeguchi and A. Kidera
Proc. Natl. Acad. Sci. USA Vol. 101 page: 17658-17663 2004
-
Integrative annotation of 21,037 human genes validated by full-length cDNA clones Reviewed
T. Imanishi et al.
PLoS. Biol. Vol. 2 page: E162 2004