Papers - OTA Motonori
-
Itinerary profiling to analyze a large number of protein-folding trajectories Reviewed
M. Ota, M. Ikeguchi, A. Kidera
Biophys. Physicobiol. Vol. 13 page： 295-304 2016.11
-
Interface property responsible for effective interactions of protean segments: Intrinsically disordered regions that undergo disorder-to-order transitions upon binding Reviewed
D. Shaji, T. Amemiya, R. Koike R, M. Ota
BBRC Vol. 478 page： 123-127 2016.9
-
Profile comparison revealed deviation from structural constraint at the positively selected sites Reviewed
H. Oda , M. Ota, H. Toh
Biosystems Vol. 147 page： 67-77 2016.7
-
Multiple-localization and hub proteins Reviewed
M. Ota, H. Gonja, R. Koike, S. Fukuchi
PLoS ONE Vol. 11 page： e0156455 2016.6
-
Comprehensive analysis of motions in molecular dynamics trajectories of the actin capping protein and its inhibitor complexes Reviewed
R. Koike, S. Takeda, Y. Maéda, M. Ota
Proteins Vol. 84 page： 948-956 2016.4
-
Investigation of the fatty acid transporter-encoding genes SLC27A3 and SLC27A4 in autism Reviewed
M. Maekawa, Y. Iwayama, T. Ohnishi, M. Toyoshima, C. Shimamoto, Y. Hisano, T. Toyota, S. Balan, H. Matsuzaki, Y. Iwata, S. Takagai, K. Yamada, M. Ota, S. Fukuchi, Y. Okada, W. Akamatsu, M. Tsujii, N. Kojima, Y. Owada, H. Okano, N. Mori, T. Yoshikawa
Sci. Rep. Vol. 5 page： 16239 2015.11
-
Domain-motion enhanced (DoME) model for efficient conformational sampling of multi-domain proteins Reviewed
C. Kobayashi, Y. Matsunaga, R. Koike, M. Ota, Y. Sugita
J. Phys. Chem. B Vol. 119 page： 14584-14593 2015.11
-
A method for systematic assessment of intrinsically disordered protein regions by NMR Reviewed
N. Goda, K. Shimizu, Y. Kuwahara, T. Noguchi, T. Ikegami, M. Ota, H. Hiroaki
Int. J. Mol. Sci. Vol. 16 page： 15743-15760 2015.7
-
Hierarchical domain-motion analysis of conformational changes in Sarcoplasmic Reticulum Ca2+-ATPase Reviewed
C. Kobayashi, R. Koike, M. Ota, Y. Sugita
Proteins Vol. 83 page： 746-756 2015.4
-
An optimized Npro-based method for the expression and purification of intrinsically disordered proteins for an NMR study Reviewed
N. Goda, N. Matsuo, T. Tenno, S. Ishino, Y. Ishino, S. Fukuchi, M. Ota, H. Hiroaki
IDP Vol. 3 page： 1-6 2015.2
-
Hierarchical description and extensive classification of protein structural changes by Motion Tree Reviewed
R. Koike, M. Ota, A. Kidera
J. Mol. Biol. Vol. 426 page： 752-762 2014.2
-
IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners Reviewed
S. Fukuchi, T. Amemiya, S. Sakamoto, Y. Nobe, K. Hosoda, Y. Kado, SD. Murakami, R. Koike, H. Hiroaki, M. Ota
Nucleic Acids Res. Vol. 42 page： D320-D325 2014.1
-
Exon resequencing of H3K9 methyltransferase complex genes, EHMT1, EHMT2 and WIZ, in Japanese autism subjects Reviewed
S. Balan, Y. Iwayama, M. Maekawa, T. Toyota, T. Ohnishi, M. Toyoshima, C. Shimamoto, K. Esaki, K. Yamada, Y. Iwata, K. Suzuki, M. Ide, M. Ota, S. Fukuchi, M. Tsujii, N. Mori, Y. Shinkai, T. Yoshikawa
Molecular Autism page： in the press 2014
-
Accidental interaction between PDZ domains and diclofenac revealed by NMR-assisted virtual screening Reviewed
T. Tenno, N. Goda, Y. Umetsu, M. Ota, K. Kinoshita, H. Hiroaki
Molecules Vol. 18 page： 9567-9581 2013.8
-
Substrate-shielding and hydrolytic reaction in hydrolases Reviewed
Y. Kanematsu, R. Koike, T. Amemiya, M. Ota
Vol. 81 page： 926-932 2013.2
-
An assignment of intrinsically disordered regions of proteins based on NMR structures Reviewed
M. Ota, R. Koike, T. Amemiya, T. Tenno, P. R. Romero, H. Hiroaki, A. K. Dunker, S. Fukuchi
J. Str. Biol. Vol. 181 page： 29-36 2013.1
-
Influence of structural symmetry on protein dynamics Reviewed
Y. Matsunaga, R. Koike, M. Ota, J. Tame, A. Kidera
PLos One Vol. 7 page： e50011 2012.11
-
A nobel biclustering approach with iterative optimization to analyze gene expression data Reviewed
S. Sutheworapong, M. Ota, H. Ohta, K. Kinoshita
Adv. Appl. Bioinform. Chem. Vol. 5 page： 23-59 2012.9
-
SCPC: A method to structurally compare protein complexes
R. Koike, M. Ota
Bioinformatics page： in press 2012.2
-
PSCDB: a database for protein structural change upon ligand binding
T. Amemiya, R. Koike, A. Kidera, M. Ota
Nucleic Acids Res. page： in press 2012