2025/05/01 更新

写真a

スズキ タカコ
鈴木 高子
SUZUKI Takako
所属
医学部附属病院 小児科 助教
職名
助教
外部リンク

学位 2

  1. 博士(医学) ( 2020年3月   名古屋大学 ) 

  2. 学士(医学) ( 2007年3月   名古屋大学 ) 

研究キーワード 12

  1. 小児感染症

  2. 小児肝炎

  3. ウイルス感染症

  4. EBウイルス

  5. 先天性サイトメガロウイルス感染症

  6. 次世代シーケンス

  7. 次世代シーケンス

  8. 小児肝炎

  9. 小児感染症

  10. 先天性サイトメガロウイルス感染症

  11. ウイルス感染症

  12. EBウイルス

研究分野 2

  1. ライフサイエンス / 胎児医学、小児成育学

  2. ライフサイエンス / 胎児医学、小児成育学

経歴 1

  1. 名古屋大学医学部附属病院   小児科学   医員

    2021年4月 - 現在

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学歴 1

  1. 名古屋大学   大学院医学系研究科   小児科学

    2014年4月 - 2020年3月

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論文 38

  1. Single-Cell Transcriptomic Analysis of Epstein-Barr Virus-Associated Hemophagocytic Lymphohistiocytosis

    Suzuki T., Sato Y., Okuno Y., Torii Y., Fukuda Y., Haruta K., Yamaguchi M., Kawamura Y., Hama A., Narita A., Muramatsu H., Yoshikawa T., Takahashi Y., Kimura H., Ito Y., Kawada J.I.

    Journal of Clinical Immunology   44 巻 ( 4 )   2024年4月

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    担当区分:筆頭著者   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Clinical Immunology  

    Epstein-Barr virus (EBV) infection can lead to infectious mononucleosis (EBV-IM) and, more rarely, EBV-associated hemophagocytic lymphohistiocytosis (EBV-HLH), which is characterized by a life-threatening hyperinflammatory cytokine storm with immune dysregulation. Interferon-gamma (IFNγ) has been identified as a critical mediator for primary HLH; however, the detailed role of IFNγ and other cytokines in EBV-HLH is not fully understood. In this study, we used single-cell RNA sequencing to characterize the immune landscape of EBV-HLH and compared it with EBV-IM. Three pediatric patients with EBV-HLH with different backgrounds, one with X-linked lymphoproliferative syndrome type 1 (XLP1), two with chronic active EBV disease (CAEBV), and two patients with EBV-IM were enrolled. The TUBA1B + STMN1 + CD8 + T cell cluster, a responsive proliferating cluster with rich mRNA detection, was explicitly observed in EBV-IM, and the upregulation of SH2D1A—the gene responsible for XLP1—was localized in this cluster. This proliferative cluster was scarcely observed in EBV-HLH cases. In EBV-HLH cases with CAEBV, upregulation of LAG3 was observed in EBV-infected cells, which may be associated with an impaired response by CD8 + T cells. Additionally, genes involved in type I interferon (IFN) signaling were commonly upregulated in each cell fraction of EBV-HLH, and activation of type II IFN signaling was observed in CD4 + T cells, natural killer cells, and monocytes but not in CD8 + T cells in EBV-HLH. In conclusion, impaired responsive proliferation of CD8 + T cells and upregulation of type I IFN signaling were commonly observed in EBV-HLH cases, regardless of the patients’ background, indicating the key features of EBV-HLH.

    DOI: 10.1007/s10875-024-01701-0

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    その他リンク: https://link.springer.com/article/10.1007/s10875-024-01701-0/fulltext.html

  2. Association between graft source and response to live-attenuated vaccination in pediatric hematopoietic stem cell transplantation recipients: a single-center retrospective study Open Access

    Suzuki T., Kawada J.i., Nishikawa E., Torii Y., Horiba K., Takeuchi S., Okumura T., Muramatsu H., Takahashi Y., Ito Y.

    Bone Marrow Transplantation   55 巻 ( 9 ) 頁: 1872 - 1874   2020年9月

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    担当区分:筆頭著者   記述言語:英語   出版者・発行元:Bone Marrow Transplantation  

    DOI: 10.1038/s41409-020-0867-8

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  3. Comprehensive detection of viruses in pediatric patients with acute liver failure using next-generation sequencing

    Suzuki T., Kawada J.i., Okuno Y., Hayano S., Horiba K., Torii Y., Takahashi Y., Umetsu S., Sogo T., Inui A., Ito Y.

    Journal of Clinical Virology   96 巻   頁: 67 - 72   2017年11月

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    担当区分:筆頭著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Clinical Virology  

    Background Pediatric acute liver failure (PALF) is a rare and severe syndrome that frequently requires liver transplantation. Viruses are one of the most frequent causes of this disease, however, pathogenic viruses are not determined in many patients. Recently next-generation sequencing (NGS) has been applied to comprehensively detect pathogens of infectious diseases of unknown etiology. Objectives To evaluate an NGS-based approach for detecting pathogenic viruses in patients with PALF or acute hepatitis of unknown etiology. Study design To detect virus-derived DNA and RNA sequences existing in sera/plasma from patients, both DNA and RNA sequencing were performed. First, we validated the ability of NGS to detect viral pathogens in clinical serum/plasma samples, and compared different commercial RNA library preparation methods Then, serum/plasma of fourteen patients with PALF or acute hepatitis of unknown etiology were evaluated using NGS. Results Among three RNA library preparation methods, Ovation RNA-Seq System V2 had the highest sensitivity to detect RNA viral sequences. Among fourteen patients, sequence reads of torque teno virus, adeno-associated virus, and stealth virus were found in the sera of one patient each, however, the pathophysiological role of these three viruses was not clarified. Significant virus reads were not detected in the remaining 11 patients. Conclusions This finding might be due to low virus titer in blood at the time of referral or a non-infectious cause might be more frequent. These results suggest an NGS-based approach has potential to detect viral pathogens in clinical samples and would contribute to clarification of the etiology of PALF.

    DOI: 10.1016/j.jcv.2017.10.001

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  4. Plasma Proteomic Profiles of Pediatric Patients With Human Herpesvirus 6B Encephalitis Following Umbilical Cord Blood Transplantation

    Haruta K., Fukuda Y., Yamaguchi H., Kawamura Y., Suzuki T., Torii Y., Narita A., Muramatsu H., Kidokoro H., Natsume J., Takahashi Y., Yoshikawa T., Kawada J.i.

    Journal of Medical Virology   97 巻 ( 3 )   2025年3月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Medical Virology  

    Human herpesvirus 6B (HHV-6B) encephalitis is a rare but severe complication of hematopoietic cell transplantation. This study investigated the pathogenesis of HHV-6B encephalitis by comparing plasma proteomic profiles of four pediatric patients with HHV-6B encephalitis to three with asymptomatic HHV-6B reactivation following umbilical cord blood transplantation (UCBT). Plasma proteomic profiling was conducted using liquid chromatography-mass spectrometry. Overall, 260 proteins were identified and quantified in plasma samples. At the onset of HHV-6B encephalitis and asymptomatic reactivation, 20 and 24 proteins, respectively, were significantly upregulated compared to their respective pre-onset levels. Of these, 11 proteins were uniquely upregulated in HHV-6B encephalitis. S100-A9 and S100-A8 were the most and second-most upregulated proteins in HHV-6B encephalitis, respectively. Elevated plasma S100A8/A9 heterodimer levels were confirmed via enzyme-linked immunosorbent assay in three of the four patients with HHV-6B encephalitis. Pathway analysis identified neutrophil degranulation as the most enriched category among upregulated proteins in HHV-6B encephalitis. Additionally, proteins related to the protein-lipid complex remodeling pathway were more prominently upregulated in HHV-6B encephalitis than in asymptomatic reactivation. Proteomic analysis revealed distinct plasma protein profiles between HHV-6B encephalitis and asymptomatic HHV-6B reactivation in pediatric UCBT recipients. The inflammatory response mediated by S100A8/A9 proteins may play a critical role in the pathogenesis of HHV-6B encephalitis. These findings indicate that proteomic analysis may provide novel insights into the host response to HHV-6B reactivation and the subsequent development of HHV-6B encephalitis.

    DOI: 10.1002/jmv.70311

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  5. Metagenomic Analysis of Lung Microbiome in Patients With Interstitial Lung Diseases and Sarcoidosis: An Experimental Study Open Access

    Takeuchi S., Kawada J.i., Suzuki A., Sakamoto K., Fukuda Y., Horiba K., Suzuki T., Torii Y., Shindo Y., Ito Y.

    Health Science Reports   8 巻 ( 2 )   2025年2月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Health Science Reports  

    Background and Aims: Interactions between the lung microbiome and pulmonary epithelium plays a pivotal role in shaping immunity in the lung. Idiopathic pulmonary fibrosis (IPF) is the most common interstitial lung disease (ILD). Some patients with IPF develop episodic acute exacerbations often associated with microbial dysbiosis in the lungs. This study aimed to investigate etiologic agents as well as the lung microbiome in patients with ILDs and sarcoidosis. Methods: This study analyzed 31 patients divided into the IPF (IPF-stable, n = 12), acute exacerbation of ILDs (AE-ILDs, n = 6), and sarcoidosis (n = 13) groups. Bronchoalveolar lavage fluid (BALF) samples were analyzed by RNA-based metagenomic next-generation sequencing (NGS) on an Illumina platform. Results: In total, 87 pathogens were detected using metagenomic NGS at the genus level. Prevotella, Streptococcus, and Veillonella dominated the BALF microbial communities, and sequence reads of these bacteria were abundant, especially in the sarcoidosis group. Conversely, only a small number of bacterial reads were detected in the AE-ILDs group, and the overall proportion of microbial composition differed from that of the other groups. No significant difference was found in community diversity (α-diversity) among the groups, whereas the structural similarity of the microflora (β-diversity) differed significantly between the AE-ILDs and sarcoidosis groups. Conclusions: Bacterial sequence reads in BALF were smaller in both the IPF-stable and AE-ILD groups than in the sarcoidosis group. Dysbiosis in the lung microbiome has been observed in patients with AE-ILD and may be related to the progression of inflammation.

    DOI: 10.1002/hsr2.70328

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  6. Clinical Practice Guidelines for the Management of Congenital Cytomegalovirus Infection in Japan 2023 Executive Summary

    Ito Y., Morioka I., Takahashi N., Fujioka K., Miura K., Moriuchi H., Morimoto N., Yoshikawa T., Ashina M., Abe S., Imafuku H., Uchida A., Okahashi A., Kakiuchi S., Kakimoto Y., Kawata S., Kawamura Y., Kido T., Kidokoro H., Kozawa K., Samejima T., Suzuki T., Tanimura K., Tomonaga C., Torii Y., Nakanishi M., Nagano N., Nagamatsu T., Narita H., Nishimura K., Nonobe N., Hasegawa Y., Hara K., Hijikata M., Fukuda T., Funato Y., Mimura N., Yamamoto N., Yoshitomi A., Kakei Y., Kodama T., Oka A.

    Pediatric Infectious Disease Journal   43 巻 ( 11 ) 頁: e390 - e396   2024年11月

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    出版者・発行元:Pediatric Infectious Disease Journal  

    Congenital cytomegalovirus (cCMV) infection is the most common congenital infection in developed countries. Although a standard therapy has not yet been established, evidence for the management of cCMV infection has been accumulating. The first edition of the “Clinical Practice Guidelines for the Management of Congenital Cytomegalovirus Infection” was published in Japan in 2023. This summary outlines the clinical questions (CQs) in the guidelines, with reference to the Japanese Medical Information Distribution Service Manual. Overall, 20 CQs with statements regarding prenatal risk assessment, prevention and management at diagnosis (CQs 1-1–1-3), diagnosis (CQs 2-1–2-6), treatment (CQs 3-1–3-7) and follow-up requirements (CQs 4-1–4-4) have been discussed. For each statement, the levels of recommendation, evidence and consensus rates were determined. These guidelines will assist in the management of patients with cCMV infection.

    DOI: 10.1097/INF.0000000000004489

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  7. Assessment of patients’ characteristics associated with the efficacy and safety of oral valganciclovir treatment for infants with symptomatic congenital cytomegalovirus disease

    Kakei Y., Morioka I., Imai T., Itohara K., Yano I., Takahashi N., Yoshikawa T., Moriuchi H., Ito Y., Fujioka K., Oka A., Okahashi A., Nagano N., Hijikata M., Fuwa K., Aoki R., Seimiya A., Imaizumi T., Akimoto T., Hara K., Katayama D., Abe S., Ashina M., Nakasone R., Kyouno Y., Takumi K., Takenaka S., Kakiuchi S., Kakimoto Y., Kozawa K., Funato Y., Miura H., Kawamura Y., Ogata T., Nakashima Y., Kawada J.i., Torii Y., Suzuki T., Fukuda Y., Haruta K., Yamaguchi M., Masaaki T.

    Journal of Infection and Chemotherapy   30 巻 ( 10 ) 頁: 971 - 977   2024年10月

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    出版者・発行元:Journal of Infection and Chemotherapy  

    Introduction: Insurance coverage for oral valganciclovir (VGCV) began in Japan in April 2023 on the basis of results, including our clinical trials for symptomatic congenital cytomegalovirus (CMV) disease. The VGCV treatment is available throughout Japan, so clinicians must consider the likelihood of hearing improvement and the possibility of neutropenia before dosing. Materials and methods: We performed a substudy of an investigator-initiated, single-arm, prospective, multicenter, clinical trial in which 24 infants with symptomatic congenital CMV disease were orally administered 16 mg/kg VGCV twice daily for 6 months as an intervention. We examined the infants’ baseline characteristics associated with improved hearing impairment or a severely reduced neutrophil count. Results: Of the 24 patients, 4 had normal hearing on assessment of their ear with the best hearing. Hearing impairment improved in 14 patients and did not respond to VGCV treatment in 6 patients at the 6-month hearing assessment. CMV DNA levels in plasma at baseline were higher in patients in whom hearing did not respond to treatment. A neutrophil count <500/mm3 occurred in 5 (21%) patients for the first 6 weeks and in 8 (33%) patients for the first 6 months. A neutrophil count at screening and the lowest neutrophil count over the 6 months showed the highest correlation (r = 0.477, p = 0.019). Conclusions: Infants with a low plasma viral load at screening tend to have an improvement in hearing impairment. Clinicians should be aware of neutropenia during VGCV treatment particularly in patients with a low neutrophil count during screening.

    DOI: 10.1016/j.jiac.2024.03.006

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  8. 次世代シークエンサーを用いた血球貪食性リンパ組織球症の病原体診断

    福田 悠人, 堀場 千尋, 岩田 健一, 山口 慎, 鈴木 高子, 河邉 慎司, 鳥居 ゆか, 川田 潤一

    臨床とウイルス   52 巻 ( 3 ) 頁: 130 - 130   2024年10月

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    記述言語:日本語   出版者・発行元:日本臨床ウイルス学会  

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  9. Association between adeno-associated virus 2 and severe acute hepatitis of unknown etiology in Japanese children 査読有り

    Iwata K.i., Torii Y., Sakai A., Fukuda Y., Haruta K., Yamaguchi M., Suzuki T., Etani Y., Takahashi Y., Umetsu S., Inui A., Sumazaki R., Kawada J.i.

    Journal of Infection and Chemotherapy   31 巻 ( 1 )   2024年7月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Infection and Chemotherapy  

    Introduction: Outbreaks of acute hepatitis of unknown etiology (AHUE) in children were reported in Western countries in 2022. Previous studies found that adeno-associated virus 2 (AAV2) and its helper viruses, such as human adenovirus (HAdV) and human herpesvirus-6 (HHV-6), are frequently detected in patients with AHUE. However, the existence of hepatitis associated with AAV2 prior to AHUE outbreaks in 2022 had not yet been investigated. We aimed to investigate the association between AAV2 and pediatric acute hepatitis in Japanese children, as well as the incidence of AAV2-related hepatitis prior to 2022. Methods: Preserved blood samples obtained from 49 pediatric patients with acute hepatitis between 2017 and 2023 were retrospectively analyzed. Blood samples from 50 children with acute illnesses and 50 children with chronic conditions were used as controls. Viral DNA loads were quantitated using real-time PCR. Results: AAV2 DNA was detected in 12 % (6/49) of acute hepatitis cases but in only one acute illness and none of the chronic-condition control cases. The concentration of AAV2 DNA in the six acute hepatitis cases was higher than that in the acute-illness control case. Co-infection with one or more helper viruses, including HAdV, HHV-6, cytomegalovirus, and Epstein-Barr virus, was observed in five AAV2-positive cases. Conclusions: Our results indicated the sporadic occurrence of pediatric severe hepatitis associated with AAV2 infection in Japan prior to the AHUE outbreaks in 2022. Our findings suggest that co-infection with AAV2 and helper viruses plays a role in developing severe hepatitis.

    DOI: 10.1016/j.jiac.2024.07.002

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  10. Serum proteomic profiles of patients with chronic recurrent multifocal osteomyelitis

    Kawada J.I., Yamaguchi M., Haruta K., Fukuda Y., Iwata K.I., Suzuki T., Torii Y.

    Rheumatology   64 巻 ( 3 ) 頁: 1138 - 1146   2024年5月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Rheumatology  

    Objectives: Chronic recurrent multifocal osteomyelitis (CRMO) is an autoinflammatory disease characterized by sterile bone inflammation; however, its pathophysiology is poorly understood. Thus, this study aimed to characterize the serum proteomic profiles of patients with CRMO to better understand the molecular mechanisms underpinning CRMO pathogenesis. Methods: Proteomic profiling of the sera collected from 11 patients with CRMO (5 patients were in active phase, 6 were in inactive phase) was conducted using liquid chromatography–mass spectrometry. Sera from four children without inflammatory diseases were used as controls. Pathway analysis was performed to identify the upregulated and downregulated proteins in patients with active CRMO. Results: Compared with the control group, 19 and 41 proteins were upregulated and downregulated, respectively, in patients with active CRMO. Pathway and process enrichment analyses revealed that axon guidance was the most enriched category of upregulated proteins in patients with active CRMO, followed by neutrophil degranulation and mitogen-activated protein kinase cascade regulation. In comparison to patients with inactive CRMO, 36 proteins, including 11 keratin proteins, were upregulated and highly enriched in the intermediate filament organization category. Rho GTPase pathway-related proteins were downregulated in ibuprofen-treated patients. Conclusion: Proteomic analysis identified upregulated proteins in the sera of patients with acute CRMO. These proteins can be used as biomarkers for disease diagnosis and activity. Furthermore, we anticipate that this study will contribute to a deeper understanding of the pathophysiology of CRMO, which, in turn, will contribute to the discovery of potential novel therapeutic targets.

    DOI: 10.1093/rheumatology/keae301

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  11. Nanopore sequencing in distinguishing between wild-type and vaccine strains of Varicella-Zoster virus 国際誌

    Fukuda Y., Suzuki T., Iwata K.i., Haruta K., Yamaguchi M., Torii Y., Narita A., Muramatsu H., Takahashi Y., Kawada J.i.

    Vaccine   42 巻 ( 11 ) 頁: 2927 - 2932   2024年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Vaccine  

    Background: The introduction of varicella vaccines into routine pediatric immunization programs has led to a considerable reduction in varicella incidence. However, there have been reports of varicella, herpes zoster, and meningitis caused by the vaccine strain of varicella-zoster virus (VZV), raising concerns. Establishing the relationship between the wild-type and vaccine strains in VZV infections among previously vaccinated individuals is crucial. Differences in the single nucleotide polymorphisms (SNPs) among vaccine strains can be utilized to identify the strain. In this study, we employed nanopore sequencing to identify VZV strains and analyzed clinical samples. Methods: We retrospectively examined vesicle and cerebrospinal fluid samples from patients with VZV infections. One sample each of the wild-type and vaccine strains, previously identified using allelic discrimination real-time PCR and direct sequencing, served as controls. Ten samples with undetermined VZV strains were included. After DNA extraction, a long PCR targeting the VZV ORF62 region was executed. Nanopore sequencing identified SNPs, allowing discrimination between the vaccine and wild-type strains. Results: Nanopore sequencing confirmed SNPs at previously reported sites (105,705, 106,262, 107,136, and 107,252), aiding in distinguishing between wild-type and vaccine strains. Among the ten unknown samples, nine were characterized as wild strains and one as a vaccine strain. Even in samples with low VZV DNA levels, nanopore sequencing was effective in strain identification. Conclusion: This study validates that nanopore sequencing is a reliable method for differentiating between the wild-type and vaccine strains of VZV. Its ability to produce long-read sequences is remarkable, allowing simultaneous confirmation of known SNPs and the detection of new mutations. Nanopore sequencing can serve as a valuable tool for the swift and precise identification of wild-type and vaccine strains and has potential applications in future VZV surveillance.

    DOI: 10.1016/j.vaccine.2024.03.046

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  12. MicroRNA expression profiling of urine exosomes in children with congenital cytomegalovirus infection 国際誌 Open Access

    Torii Y., Suzuki T., Fukuda Y., Haruta K., Yamaguchi M., Horiba K., Kawada J.I., Ito Y.

    Scientific Reports   14 巻 ( 1 ) 頁: 5475 - 5475   2024年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Scientific Reports  

    Congenital cytomegalovirus (cCMV) infection can damage the central nervous system in infants; however, its prognosis cannot be predicted from clinical evaluations at the time of birth. Urinary exosomes can be used to analyze neuronal damage in neuronal diseases. To investigate the extent of neuronal damage in patients with cCMV, exosomal miRNA expression in the urine was investigated in cCMV-infected infants and controls. Microarray analysis of miRNA was performed in a cohort of 30 infants, including 11 symptomatic cCMV (ScCMV), 7 asymptomatic cCMV (AScCMV), and one late-onset ScCMV cases, and 11 healthy controls (HC). Hierarchical clustering analysis revealed the distinct expression profile of ScCMV. The patient with late-onset ScCMV was grouped into the ScCMV cluster. Pathway enrichment analysis of the target mRNAs differed significantly between the ScCMV and HC groups; this analysis also revealed that pathways related to brain development were linked to upregulated pathways. Six miRNAs that significantly different between groups (ScCMV vs. HC and ScCMV vs. AScCMV) were selected for digital PCR in another cohort for further validation. Although these six miRNAs seemed insufficient for predicting ScCMV, expression profiles of urine exosomal miRNAs can reveal neurological damage in patients with ScCMV compared to those with AcCMV or healthy infants.

    DOI: 10.1038/s41598-024-56106-1

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  13. Comparison of Whole Blood and Plasma for Monitoring Cytomegalovirus and Epstein–Barr Virus Open Access

    Fukuda Y., Torii Y., Iwata K.I., Haruta K., Yamaguchi M., Suzuki T., Narita A., Muramatsu H., Ogura Y., Takahashi Y., Ito Y., Kawada J.I.

    New Microbiologica   47 巻 ( 1 ) 頁: 52 - 59   2024年3月

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    出版者・発行元:New Microbiologica  

    Monitoring Epstein–Barr virus (EBV) and cytomegalovirus (CMV) infection after transplantation is recommended to enable preemptive therapy. However, the most suitable sample type remains unclear. Patients who underwent hematopoietic stem cell or liver transplantation were included in this study. Viral loads in sequential whole-blood and plasma samples were retrospectively analyzed. EBV DNA was detected more frequently in whole blood (55%) than in plasma (18%). The detection rate of CMV DNA was similar between the two sample types. The correlation of viral loads between the two sample types were 0.515 and 0.688 for EBV and CMV, respectively. Among paired samples in which EBV DNA was detected in whole blood, the plasma EBV detection rate was significantly higher in patients who underwent hematopoietic stem cell transplantation than in those who underwent liver transplantation. The viral DNA load in whole blood and plasma showed similar trends. The EBV detection rate was higher in whole blood, and a high correlation was observed between CMV DNA loads and whole blood and plasma. These results indicate that whole blood is more sensitive for monitoring both EBV and CMV, whereas plasma is a potential alternative sample for monitoring CMV.

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  14. Comparison of plasma proteomic profiles of patients with Epstein-Barr virus-associated hemophagocytic lymphohistiocytosis and infectious mononucleosis 国際誌

    Haruta K., Suzuki T., Yamaguchi M., Fukuda Y., Torii Y., Takahashi Y., Ito Y., Kawada J.i.

    Journal of Medical Virology   96 巻 ( 2 ) 頁: e29450   2024年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Medical Virology  

    Primary Epstein-Barr virus (EBV) infection occasionally causes EBV-infectious mononucleosis (EBV-IM) and EBV-hemophagocytic lymphohistiocytosis (EBV-HLH). Although EBV-IM is mostly mild and self-limiting, EBV-HLH is a life-threatening disease characterized by excessive immune activation. However, the pathogenesis of EBV-HLH is yet to be fully elucidated. A diagnostic biomarker for EBV-HLH is desirable because early diagnosis and treatment are critical for the effective management of patients. In this study, the proteomic profiling of plasma was performed using liquid chromatography-mass spectrometry to identify proteins specific to EBV-IM and EBV-HLH. Furthermore, pathway analysis was performed for the proteins upregulated in patients with EBV-IM and EBV-HLH. Compared to healthy controls, 63 and 18 proteins were upregulated in patients with EBV-IM and EBV-HLH, respectively. Pathway and process enrichment analyses revealed that the complement system was the most enriched category of upregulated proteins in EBV-IM, whereas proteins related to immune effector processes were the most enriched in EBV-HLH. Among the 18 proteins upregulated in EBV-HLH, seven were exclusive to EBV-HLH. These specific proteins were associated with three pathways, and apolipoprotein E was commonly found in all the pathways. Proteomic analysis may provide new insights into the host response to EBV infection and the pathogenesis of EBV-related diseases.

    DOI: 10.1002/jmv.29450

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  15. Association between loss of hypercoagulable phenotype, clinical features and complement pathway consumption in COVID-19 Open Access

    Kasugai D., Tanaka T., Suzuki T., Ito Y., Nishida K., Ozaki M., Kutsuna T., Yokoyama T., Kaneko H., Ogata R., Matsui R., Goshima T., Hamada H., Ishii A., Kodama Y., Jingushi N., Ishikura K., Kamidani R., Tada M., Okada H., Yamamoto T., Goto Y.

    Frontiers in Immunology   15 巻   2024年

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    出版者・発行元:Frontiers in Immunology  

    Background: Coronavirus disease 2019 (COVID-19) features a hypercoagulable state, but therapeutic anticoagulation effectiveness varies with disease severity. We aimed to evaluate the dynamics of the coagulation profile and its association with COVID-19 severity, outcomes, and biomarker trajectories. Methods: This multicenter, prospective, observational study included patients with COVID-19 requiring respiratory support. Rotational thromboelastometry findings were evaluated for coagulation and fibrinolysis status. Hypercoagulable status was defined as supranormal range of maximum clot elasticity in an external pathway. Longitudinal laboratory parameters were collected to characterize the coagulation phenotype. Results: Of 166 patients, 90 (54%) were severely ill at inclusion (invasive mechanical ventilation, 84; extracorporeal membrane oxygenation, 6). Higher maximum elasticity (P=0.02) and lower maximum lysis in the external pathway (P=0.03) were observed in severely ill patients compared with the corresponding values in patients on non-invasive oxygen supplementation. Hypercoagulability components correlated with platelet and fibrinogen levels. Hypercoagulable phenotype was associated with favorable outcomes in severely ill patients, while normocoagulable phenotype was not (median time to recovery, 15 days vs. 27 days, P=0.002), but no significant association was observed in moderately ill patients. In patients with severe COVID-19, lower initial C3, minimum C3, CH50, and greater changes in CH50 were associated with the normocoagulable phenotype. Changes in complement components correlated with dynamics of coagulation markers, hematocrit, and alveolar injury markers. Conclusions: While hypercoagulable states become more evident with increasing severity of respiratory disease in patients with COVID-19, normocoagulable phenotype is associated with triggered by alternative pathway activation and poor outcomes.

    DOI: 10.3389/fimmu.2024.1337070

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  16. Next-generation sequencing-based detection of Ureaplasma in the gastric fluid of neonates with respiratory distress and chorioamnionitis 国際誌 Open Access

    Okumura T., Horiba K., Tetsuka N., Sato Y., Sugiyama Y., Haruta K., Yamaguchi M., Suzuki T., Torii Y., Kawada J.i., Ogi T., Hayakawa M., Ito Y.

    Journal of Maternal-Fetal and Neonatal Medicine   36 巻 ( 1 ) 頁: 2207113 - 2207113   2023年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Maternal-Fetal and Neonatal Medicine  

    Background: Respiratory distress is common in neonates admitted to neonatal intensive care units. Additionally, infectious diseases such as intrauterine infections or vertical transmission are important underlying causes of respiratory failure. However, pathogens often cannot be identified in neonates, and there are many cases in which antibacterial drugs are empirically administered. Next-generation sequencing (NGS) is advantageous in that it can detect trace amounts of bacteria that cannot be detected by culturing or bacteria that are difficult to cultivate. However, there are few reports on the diagnosis of infectious diseases using NGS in the neonatal field, especially those targeting respiratory distress. Objective: The purpose of our study was to investigate the microorganisms associated with neonatal respiratory distress and to determine whether less invasive collection specimens such as plasma and gastric fluid are useful. Methods: Neonates were prospectively recruited between January and August 2020 from Nagoya University Hospital. The inclusion criteria were as follows: 1) admission to the neonatal intensive care unit; 2) respiratory distress presentation within 48 h of birth; and 3) suspected infection, collection of blood culture, and administration of antibiotics. Plasma samples and blood cultures were simultaneously collected. Gastric fluid samples were also collected if the patient was not started on enteral nutrition. Information on the patients and their mothers were collected from the medical records. DNA was extracted from 140 µL of plasma and gastric fluid samples. DNA sequencing libraries were prepared, and their quality was analyzed. DNA libraries were sequenced using high-throughput NGS. The NGS data of plasma and gastric fluid samples were analyzed using the metagenomic pipeline PATHDET, which calculated the number of reads assigned to microorganisms and their relative abundance. Putative pathogens were listed. Results: Overall, 30 plasma samples and 25 gastric fluid samples from 30 neonates were analyzed. Microorganism-derived reads of gastric fluid samples were significantly higher than those of plasma samples. Transient tachypnea of the newborn was the most common cause of respiratory distress with 13 cases (43%), followed by respiratory distress syndrome with 7 cases (23%). There were 8 cases (29%) of chorioamnionitis and 7 cases (25%) of funisitis pathologically diagnosed. All blood cultures were negative, and only two gastric fluid cultures were positive for group B Streptococcus (Patient 15) and Candida albicans (Patient 24). Putative pathogens that met the positive criteria for PATHET were detected in four gastric fluid samples, one of which was group B Streptococcus from Patient 15. In the gastric fluid sample of Patient 24, Candida albicans were detected by NGS but did not meet the positive criteria for PATHDET. Cluster analysis of the plasma samples divided them into two study groups, and the indicator genera of each cluster (Phormidium or Toxoplasma) are shown in Figure 1. Clinical findings did not show any significant differences between the two groups. Cluster analysis of the gastric fluid samples divided them into three study groups, and the indicator genera of each cluster (Ureaplasma, Nostoc, and Streptococcus) are shown in Figure 2. The incidence rate of chorioamnionitis was significantly higher in Ureaplasma group than in the other two groups. Conclusion: Gastric fluid may be useful for assessing neonatal patients with respiratory distress. To the best of our knowledge, this was the first study to reveal that the presence of Ureaplasma in the gastric fluid of neonates with respiratory distress was associated with chorioamnionitis. The early diagnosis of intra-amniotic infections using gastric fluid and its treatment may change the treatment strategy for neonatal respiratory distress. Screening for Ureaplasma in neonates with respiratory distress may reduce the need for empirical antibiotic administration. Further research is required to confirm these findings.

    DOI: 10.1080/14767058.2023.2207113

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  17. Proteomic Analysis Reveals Novel Plasma Biomarkers for Neurological Complications in Patients With Congenital Cytomegalovirus Infection 国際誌

    Yamaguchi M., Suzuki T., Kidokoro H., Iwata K.I., Fukuda Y., Haruta K., Torii Y., Ito Y., Kawada J.I.

    Journal of the Pediatric Infectious Diseases Society   12 巻 ( 10 ) 頁: 525 - 533   2023年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of the Pediatric Infectious Diseases Society  

    Background: Congenital cytomegalovirus (cCMV) infection is a leading cause of nonhereditary neurological complications. When considering antiviral treatment, it is important to differentiate between symptomatic and asymptomatic patients. This study aimed to identify candidate plasma biomarkers for neurological complications of cCMV infection using proteomic analysis. Methods: This study retrospectively enrolled five patients with symptomatic cCMV infection, four with asymptomatic cCMV infection with isolated sensorineural hearing loss (SNHL), and five with asymptomatic cCMV infection. The plasma samples were collected during neonatal period. The peptides were analyzed using liquid chromatography-mass spectrometry. The concentrations of differentially expressed proteins were validated using an enzyme-linked immunosorbent assay. Results: A total of 456 proteins were identified and quantified. The levels of 80 proteins were significantly different between patients with and without cCMV-related symptoms including isolated SNHL. The levels of 31 proteins were significantly different between patients with and without neuroimaging abnormalities. The plasma concentrations of Fms-related receptor tyrosine kinase 4 in patients with cCMV-related symptoms were significantly higher than those in patients with asymptomatic cCMV infection. Moreover, plasma peptidylprolyl isomerase A levels were significantly higher in patients with neuroimaging abnormalities than in those without. Conclusions: Proteomic analysis of patients with cCMV infection showed that Fms-related receptor tyrosine kinase 4 and peptidylprolyl isomerase A could be novel diagnostic biomarkers for neurological complications of cCMV infection.

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  18. Utility of nanopore sequencing for detecting pathogens in bronchoalveolar lavage fluid from pediatric patients with respiratory failure Open Access

    Yamaguchi M., Horiba K., Haruta K., Takeuchi S., Suzuki T., Torii Y., Kawabe S., Wada S., Ikeyama T., Ito Y., Ogi T., Kawada J.i.

    Journal of Clinical Virology Plus   3 巻 ( 2 ) 頁: 100154 - 100154   2023年6月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Clinical Virology Plus  

    RNA viruses are the most frequent pathogens responsible for respiratory infections, particularly in pediatric patients. Next-generation sequencing, represented by Illumina sequencing, is one of the most comprehensive methods for identifying pathogens. Nanopore sequencing has been used to identify and analyze pathogens with a shorter sequencing time. In this study, we evaluated the utility of nanopore sequencing for the detection of RNA viruses in bronchoalveolar lavage fluid (BALF) of pediatric patients with respiratory failure. Using the seven BALF samples, we first compared the nanopore and Illumina sequencing results. The nanopore sequencing detected the same RNA viruses as the Illumina sequencing. Subsequently, BALF samples from 24 additional pediatric patients with respiratory failure were analyzed by nanopore sequencing, and RNA viral pathogens were detected in 10 out of 24 patients. Among these 10 patients, nanopore sequencing identified the same viral pathogens as detected by the PCR and viral antigen tests in five patients. Furthermore, additional RNA viral pathogens were detected by nanopore sequencing with high genome coverage in five patients that were not detected by PCR and viral antigen tests. In conclusion, nanopore sequencing could comprehensively detect RNA viral pathogens in BALF samples with equivalent sensitivity and genome coverage as Illumina sequencing. This rapid sequencing platform may be more beneficial for detecting RNA viruses in clinical settings.

    DOI: 10.1016/j.jcvp.2023.100154

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  19. Association between NUDT15 R139C Genotype and Neutropenia during Antiviral Therapy in Patients with Congenital Cytomegalovirus Infection Open Access

    Yamaguchi M., Iwata K.I., Fukuda Y., Haruta K., Suzuki T., Torii Y., Ito Y., Kawada J.I.

    Pediatric Infectious Disease Journal   Publish Ahead of Print 巻 ( 7 ) 頁: E256 - E257   2023年3月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Pediatric Infectious Disease Journal  

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  20. Droplet Digital PCR Development for Adenovirus Load Monitoring in Children after Hematopoietic Stem Cell Transplantation Open Access

    Haruta K., Takeuchi S., Yamaguchi M., Horiba K., Suzuki T., Torii Y., Narita A., Muramatsu H., Takahashi Y., Ito Y., Kawada J.i.

    Journal of Molecular Diagnostics   25 巻 ( 6 ) 頁: 403 - 409   2023年3月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Molecular Diagnostics  

    Human adenovirus (AdV) reactivation after hematopoietic stem cell transplantation (HSCT) is associated with life-threatening clinical manifestations. Although real-tme quantitative PCR (qPCR) has been widely used to measure AdV loads, it has not been standardized for AdV. Droplet digital PCR (ddPCR) is a novel pathogen detection technology that enables the absolute quantification of viral loads. ddPCR would enable a more accurate AdV DNA detection compared with qPCR. In this study, ddPCR was developed for AdV DNA and its performance characteristics compared with those of qPCR. AdV DNAemia incidence during the first 12 weeks after allogenic HSCT was then retrospectively examined by qPCR and ddPCR in 97 HSCT procedures using the preserved 545 DNA samples. ddPCR exhibited better reproducibility and sensitivity, as well as equivalent quantifiability, compared with qPCR. AdV DNA among HSCT patients was detected in 11 (2.0%) and 49 (9.0%) of 545 samples by qPCR and ddPCR, respectively. AdV DNA levels >1000 copies/mL were observed in five cases by qPCR and/or ddPCR. However, two patients developed fulminant hepatitis and died; other patients remained asymptomatic with subsequently undetectable AdV DNA. In conclusion, ddPCR was more sensitive and reproducible in detecting AdV DNA among pediatric HSCT recipients than qPCR. ddPCR offers the potential to provide a more accurate DNAemia detection, determine cutoff values for treatment initiation, and enable antiviral efficacy assessment.

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  21. ナノポアシークエンサーによる小児中枢神経感染症患者の髄液トランスクリプトーム解析

    堀場 千尋, 鳥居 ゆか, 山口 慎, 春田 一憲, 奥村 俊彦, 鈴木 高子, 河野 好彦, 川田 潤一, 伊藤 嘉規

    日本感染症学会総会・学術講演会・日本化学療法学会学術集会合同学会プログラム・抄録集   97回・71回 巻   頁: O - 147   2023年3月

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    記述言語:日本語   出版者・発行元:日本感染症学会・日本化学療法学会  

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  22. Post-exposure prophylaxis to prevent varicella in immunocompromised children Open Access

    Yamaguchi M., Tetsuka N., Okumura T., Haruta K., Suzuki T., Torii Y., Kawada J.i., Ito Y.

    Infection Prevention in Practice   4 巻 ( 4 ) 頁: 100242 - 100242   2022年12月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Infection Prevention in Practice  

    Background: Varicella-zoster virus (VZV) infection can cause life-threatening events in immunocompromised patients. Post-exposure prophylaxis (PEP) is required to prevent secondary VZV infection. Limited evidence is available for the use of acyclovir (ACV)/valacyclovir (VCV) as PEP. Methods: Herein, we retrospectively analyzed immunocompromised paediatric patients with significant exposure to VZV. Patients administered PEP were categorized into four groups: 1) ACV/VCV group; 2) intravenous immunoglobulin (IVIG) group; 3) ACV/VCV/IVIG group; 4) vaccine group. Results: Among 69 exposure events, 107 patients were administered PEP (91, ACV/VCV; 16, ACV/VCV/IVIG) and 10 patients did not receive PEP (non-PEP group). The index case was diagnosed based on clinical symptoms in 55 cases (79.7%). Fourteen cases (20.3%) were confirmed using direct virological diagnostic procedures. In the PEP group, only 2 patients (2.2%) developed secondary VZV infections. Additionally, 2 patients in the non-PEP group (20.0%) developed secondary VZV infection. The incidence of secondary VZV infection was significantly lower in the PEP group than in the non-PEP group (P=0.036). Among patients administered PEP, no antiviral drug-induced side effects were detected. Conclusions: Antiviral agents administered as PEP are effective and safe for preventing VZV infections in immunocompromised patients. Rapid virological diagnosis of index cases might allow efficient administration of PEP after significant exposure to VZV infection.

    DOI: 10.1016/j.infpip.2022.100242

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  23. Performance of Nanopore and Illumina Metagenomic Sequencing for Pathogen Detection and Transcriptome Analysis in Infantile Central Nervous System Infections 国際誌 Open Access

    Horiba K., Torii Y., Aizawa Y., Yamaguchi M., Haruta K., Okumura T., Suzuki T., Kawano Y., Kawada J.I., Hara S., Saitoh A., Giske C.G., Ogi T., Ito Y.

    Open Forum Infectious Diseases   9 巻 ( 10 ) 頁: ofac504   2022年10月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Open Forum Infectious Diseases  

    Background: Infantile central nervous system infections (CNSIs) can be life-threatening and cause severe sequelae. However, the causative microorganism remains unknown in >40% of patients with aseptic infections. This study aimed to analyze the metagenome for detection of pathogens and the transcriptome for host immune responses during infection in a single cerebrospinal fluid (CSF) sample using 2 different next-generation sequencing (NGS) platforms, Nanopore and Illumina. Methods: Twenty-eight CNSIs patients (<12 months) were enrolled, and 49 clinical samples (28 CSF and 21 blood) were collected. The DNA extracted from all 49 samples was sequenced using the Illumina sequencer for the detection of pathogens. Extracted RNA was obtained in sufficient quantities from 23 CSF samples and subjected to sequencing on both Nanopore and Illumina platforms. Human-derived reads subtracted during pathogen detection were used for host transcriptomic analysis from both Nanopore and Illumina sequencing. Results: RNA metagenomic sequencing using both sequencing platforms revealed putative viral pathogens in 10 cases. DNA sequencing using the Illumina sequencer detected 2 pathogens. The results of Nanopore and Illumina RNA sequencing were consistent; however, the mapping coverage and depth to the detected pathogen genome of Nanopore RNA sequencing were greater than those of Illumina. Host transcriptomic analysis of Nanopore sequencing revealed highly expressed genes related to the antiviral roles of innate immunity from pathogen-identified cases. Conclusions: The use of Nanopore RNA sequencing for metagenomic diagnostics of CSF samples should help to elucidate both pathogens and host immune responses of CNSI and could shed light on the pathogenesis of these infections.

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  24. Quantitative assessment of viral load in the blood and urine of patients with congenital cytomegalovirus infection using droplet digital PCR Open Access

    Yamaguchi M., Kawada J.i., Torii Y., Haruta K., Suzuki T., Horiba K., Takahashi Y., Ito Y.

    Journal of Medical Virology   94 巻 ( 9 ) 頁: 4559 - 4564   2022年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Medical Virology  

    Congenital cytomegalovirus infection (cCMV) is a common cause of congenital infections, leading to neurodevelopmental sequelae. Real-time quantitative polymerase chain reaction (qPCR) has been widely used for the diagnosis and assessment of cCMV; however, the correlation between CMV DNA load and the severity of cCMV symptoms has been inconclusive. Droplet digital PCR (ddPCR) offers an improvement over the current qPCR methods through the absolute quantification of viral loads. We compared ddPCR and qPCR results for the quantification of CMV DNA in blood and urine specimens from 39 neonates with cCMV (21 symptomatic and 18 asymptomatic). There was no significant difference in blood CMV DNA loads measured by ddPCR and qPCR, with or without any clinical findings. However, developmental delays at 36 months were significantly more frequently observed in patients with high CMV DNA loads (≥2950 copies/ml), as measured by ddPCR at diagnosis, than in those with lower CMV DNA loads. The association of urine CMV DNA load with symptoms and developmental delay was not observed. CMV DNA loads in the blood might be used as a predictor of developmental outcomes in cCMV patients, and absolute quantitation of viral loads by ddPCR assay could contribute to the standardization of CMV load measurement.

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  25. Detection of antiviral drug resistance in patients with congenital cytomegalovirus infection using long-read sequencing: a retrospective observational study Open Access

    Torii Y., Horiba K., Kawada J.i., Haruta K., Yamaguchi M., Suzuki T., Uryu H., Kashiwa N., Goishi K., Ogi T., Ito Y.

    BMC Infectious Diseases   22 巻 ( 1 )   2022年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BMC Infectious Diseases  

    Background: Congenital human cytomegalovirus (cCMV) infection can cause sensorineural hearing loss and neurodevelopmental disabilities in children. Ganciclovir and valganciclovir (GCV/VGCV) improve long-term audiologic and neurodevelopmental outcomes for patients with cCMV infection; however, antiviral drug resistance has been documented in some cases. Long-read sequencing can be used for the detection of drug resistance mutations. The objective of this study was to develop full-length analysis of UL97 and UL54, target genes with mutations that confer GCV/VGCV resistance using long-read sequencing, and investigate drug resistance mutation in patients with cCMV infection. Methods: Drug resistance mutation analysis was retrospectively performed in 11 patients with cCMV infection treated with GCV/VGCV. UL97 and UL54 genes were amplified using blood DNA. The amplicons were sequenced using a long-read sequencer and aligned with the reference gene. Single nucleotide variants were detected and replaced with the reference sequence. The replaced sequence was submitted to a mutation resistance analyzer, which is an open platform for drug resistance mutations. Results: Two drug resistance mutations (UL54 V823A and UL97 A594V) were found in one patient. Both mutations emerged after 6 months of therapy, where viral load increased. Mutation rates subsided after cessation of GCV/VGCV treatment. Conclusions: Antiviral drug resistance can emerge in patients with cCMV receiving long-term therapy. Full-length analysis of UL97 and UL54 via long-read sequencing enabled the rapid and comprehensive detection of drug resistance mutations.

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  26. MicroRNA expression profiling of cerebrospinal fluid/serum exosomes in children with human herpesvirus 6-associated encephalitis/encephalopathy by high-throughput sequencing

    Torii Y., Kawada J.i., Horiba K., Okumura T., Suzuki T., Ito Y.

    Journal of NeuroVirology   28 巻 ( 1 ) 頁: 151 - 157   2022年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of NeuroVirology  

    Primary human herpesvirus 6 (HHV-6) infection is sometimes accompanied by acute encephalopathy with reduced subcortical diffusion (AED) in immunocompetent children. We investigated exosomal microRNA (miRNA) expression profiles in cerebrospinal fluid (CSF) and sera of patients with HHV-6-associated AED (n = 5) and febrile seizure (FS) (n = 5) using high-throughput sequencing. A total of 176 and 663 miRNAs were identified in CSF and serum exosomes, respectively. Comparative analysis determined that some miRNAs (miR-381-3p, miR-155) were exclusively expressed in the CSF exosomes of AED but not of FS patients, suggesting their potential application as novel diagnostic biomarkers for AED.

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  27. Next-Generation Sequencing to Detect Pathogens in Pediatric Febrile Neutropenia: A Single-Center Retrospective Study of 112 Cases Open Access

    Horiba K., Torii Y., Okumura T., Takeuchi S., Suzuki T., Kawada J.I., Muramatsu H., Takahashi Y., Ogi T., Ito Y.

    Open Forum Infectious Diseases   8 巻 ( 11 )   2021年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Open Forum Infectious Diseases  

    Background. Febrile neutropenia (FN) is a frequent complication in immunocompromised patients. However, causative microorganisms are detected in only 10% of patients. This study aimed to detect the microorganisms that cause FN using next-generation sequencing (NGS) to identify the genome derived from pathogenic microorganisms in the bloodstream. Here, we implemented a metagenomic approach to comprehensively analyze microorganisms present in clinical samples from patients with FN. Methods. FN is defined as a neutrophil count <500 cells/µL and fever ≥37.5°C. Plasma/serum samples of 112 pediatric patients with FN and 10 patients with neutropenia without fever (NE) were sequenced by NGS and analyzed by a metagenomic pipeline, PATHDET. Results. The putative pathogens were detected by NGS in 5 of 10 FN patients with positive blood culture results, 15 of 87 FN patients (17%) with negative blood culture results, and 3 of 8 NE patients. Several bacteria that were common in the oral, skin, and gut flora were commonly detected in blood samples, suggesting translocation of the human microbiota to the bloodstream in the setting of neutropenia. The cluster analysis of the microbiota in blood samples using NGS demonstrated that the representative bacteria of each cluster were mostly consistent with the pathogens in each patient. Conclusions. NGS technique has great potential for detecting causative pathogens in patients with FN. Cluster analysis, which extracts characteristic microorganisms from a complex microbial population, may be effective to detect pathogens in minute quantities of microbiota, such as those from the bloodstream.

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  28. A Case of Descending Necrotizing Mediastinitis in a Previously Healthy Child Open Access

    Toshihiko Okumura, Nobuyuki Tetsuka, Makoto Yamaguchi, Takako Suzuki, Yuka Torii, Jun-ichi Kawada, Yoshinori Ito

    CASE REPORTS IN PEDIATRICS   2021 巻   2021年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:HINDAWI LTD  

    Descending necrotizing mediastinitis (DNM) is a rare complication of oropharyngeal and cervical infection, especially in children. We report a case of DNM secondary to a cervical abscess in a previously healthy 1-year-old boy. The patient presented with redness and swelling of the neck and fever. He was treated with an antimicrobial agent for the diagnosis of cervical lymphadenitis. On the sixth day, a huge mediastinal abscess was found, and he was admitted to the intensive care unit. He was successfully treated with surgical drainage and appropriate antimicrobial therapy. The pus culture isolated multiple bacteria, including methicillin-resistant Staphylococcus aureus (MRSA). Although we did not use an antimicrobial agent covering MRSA, the symptoms and test results improved. Washing with drainage was effective. The patient required multidisciplinary treatment, and we collaborated with specialists in other departments. DNM is a severe disease in which team medical care is needed to provide appropriate treatment.</p>

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  29. Pediatric sepsis cases diagnosed with group B streptococcal meningitis using next-generation sequencing: a report of two cases Open Access

    Horiba K., Suzuki M., Tetsuka N., Kawano Y., Yamaguchi M., Okumura T., Suzuki T., Torii Y., Kawada J.i., Morita M., Hara S., Ogi T., Ito Y.

    BMC Infectious Diseases   21 巻 ( 1 )   2021年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BMC Infectious Diseases  

    Background: Group B Streptococcus (GBS) is an important cause of invasive infection in neonates and infants. Cerebrospinal fluid (CSF) findings and culture may not show evidence of infection early in GBS meningitis. Next-generation sequencing (NGS) has the potential to detect microbial genetic material in patients with infectious diseases. We report two cases of infantile sepsis of GBS meningitis with negative results for CSF culture tests, but positive results for NGS analysis. Case presentation: Patient 1 was a 22-day-old male infant diagnosed with sepsis and meningitis. His CSF findings showed pleocytosis, decreased glucose, and increased protein levels. However, CSF and blood culture results at admission were negative. He received a total of 3 weeks of treatment with ampicillin and cefotaxime, and showed clinical improvement. GBS was detected through NGS analysis of CSF collected at admission. Patient 2 was a 51-day-old male infant with sepsis. CSF findings on admission were normal, and blood and CSF cultures were also negative. Intravenous ampicillin and cefotaxime treatment were initiated. Treatment was de-escalated to ampicillin alone because Enterococcus faecalis was cultured from urine. He was discharged after a total of 1 week of antibiotic treatment. Six days after discharge, he was re-hospitalized for sepsis. Blood and CSF cultures were negative, and E. faecalis was again cultured from urine. He received a total of 3 weeks of ampicillin treatment for enterococcal-induced nephritis and did not relapse thereafter. NGS pathogen searches were retrospectively performed on both blood and CSF collected at the first and second admission. GBS was detected in the CSF collected at the first admission, but no significant pathogen was detected in the other samples. Inadequate treatment for GBS meningitis at the first admission may have caused the recurrence of the disease. Conclusion: Infantile sepsis may present bacterial meningitis that is not diagnosed by either culture testing or CSF findings. NGS analysis for CSF may be useful for confirming the diagnosis of bacterial meningitis.

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  30. Temporal dynamics of the plasma microbiome in recipients at early post-liver transplantation: a retrospective study Open Access

    Okumura T., Horiba K., Kamei H., Takeuchi S., Suzuki T., Torii Y., Kawada J.i., Takahashi Y., Ogura Y., Ogi T., Ito Y.

    BMC Microbiology   21 巻 ( 1 )   2021年4月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BMC Microbiology  

    Background: Immunosuppression during liver transplantation (LT) enables the prevention and treatment of organ rejection but poses a risk for severe infectious diseases. Immune modulation and antimicrobials affect the plasma microbiome. Thus, determining the impact of immunosuppression on the microbiome may be important to understand immunocompetence, elucidate the source of infection, and predict the risk of infection in LT recipients. We characterized the plasma microbiome of LT recipients at early post-LT and assessed the association between the microbiome and clinical events. Results: In this study, 51 patients who received LT at Nagoya University Hospital from 2016 to 2018 were enrolled. Plasma samples were retrospectively collected at the following time points: 1) within a week after LT; 2) 4 ± 1 weeks after LT; 3) 8 ± 1 weeks after LT; and 4) within 2 days after a positive blood culture. A total of 111 plasma samples were analyzed using shotgun next-generation sequencing (NGS) with the PATHDET pipeline. Relative abundance of Anelloviridae, Nocardiaceae, Microbacteriaceae, and Enterobacteriaceae significantly changed during the postoperative period. Microbiome diversity was higher within a week after LT than that at 8 weeks after LT. Antimicrobials were significantly associated with the microbiome of LT recipients. In addition, the proportion of Enterobacteriaceae was significantly increased and the plasma microbiome diversity was significantly lower in patients with acute cellular rejection (ACR) than non-ACR patients. Sequencing reads of bacteria isolated from blood cultures were predominantly identified by NGS in 8 of 16 samples, and human herpesvirus 6 was detected as a causative pathogen in one recipient with severe clinical condition. Conclusions: The metagenomic NGS technique has great potential in revealing the plasma microbiome and is useful as a comprehensive diagnostic procedure in clinical settings. Temporal dynamics of specific microorganisms may be used as indirect markers for the determination of immunocompetence and ACR in LT recipients.

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  31. Immune cell infiltration landscapes in pediatric acute myocarditis analyzed by CIBERSORT Open Access

    Kawada J.i., Takeuchi S., Imai H., Okumura T., Horiba K., Suzuki T., Torii Y., Yasuda K., Imanaka-Yoshida K., Ito Y.

    Journal of Cardiology   77 巻 ( 2 ) 頁: 174 - 178   2021年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Cardiology  

    Background: Myocarditis is an inflammatory disease of the myocardium, which leads to cardiac dysfunction and heart failure. Previous studies have suggested that complex cross-talk between innate and adaptive immune responses is involved in the pathogenesis of acute myocarditis. Immunohistochemistry is the current standard method for the evaluation of infiltrating immune cells, however, it is difficult to investigate and quantify many immune cell populations using this technique. Methods: Endomyocardial biopsy samples of five pediatric patients with myocarditis were analyzed by cell-type identification by estimating relative subsets of RNA transcript (CIBERSORT), a computational method for quantifying cell fractions from tissue gene expression profiles. CIBERSORT results were then compared with immunohistochemistry analyses. Results: Significant results of immune infiltrate deconvolution were obtained in four patients with fulminant myocarditis by CIBERSORT analysis. Among 22 immune cell types, 19 cell types were detected in one or more patients. Activated NK cells were the most prevalent population in two patients, whereas activated memory CD4+ T cells and M2 macrophages were the most prevalent population in one patient each. Overall CIBERSORT results were consistent with those of immunohistochemistry, although some discrepancies were observed. Conclusions: Infiltrating immune cell subsets detected by CIBERSORT analysis can reflect the time course of innate and adaptive immune responses in acute myocarditis. CIBERSORT may have the potential to characterize the detail of infiltrating immune cells in myocardial tissues and provide novel insights into the pathogenesis of acute myocarditis.

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  32. Comprehensive Detection of Candidate Pathogens in the Lower Respiratory Tract of Pediatric Patients with Unexpected Cardiopulmonary Deterioration Using Next-Generation Sequencing Open Access

    Takeuchi S., Kawada J.I., Horiba K., Yamaguchi M., Okumura T., Suzuki T., Torii Y., Kawabe S., Wada S., Ikeyama T., Ito Y.

    Pediatric Critical Care Medicine   21 巻 ( 11 ) 頁: E1026 - E1030   2020年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Pediatric Critical Care Medicine  

    Objectives: Next-generation sequencing has been applied to the investigation of microorganisms in several clinical settings. We investigated the infectious etiologies in respiratory specimens from pediatric patients with unexpected cardiopulmonary deterioration using next-generation sequencing. Design: Retrospective, single-center, observational study. Setting: Tertiary care, a children's hospital. Subjects: The study enrolled a total of 16 pediatric patients with unexpected cardiopulmonary deterioration who were admitted to the PICU. Ten bronchoalveolar lavage fluid and six transtracheal aspirate samples were analyzed. Interventions: None. Measurements and Main Results: RNA libraries were prepared from specimens and analyzed using next-generation sequencing. One or more bacterial/viral pathogens were detected in the bronchoalveolar lavage fluid or transtracheal aspirate specimens from 10 patients. Bacterial and viral coinfection was considered in four cases. Compared with the conventional culture and viral antigen test results, an additional six bacterial and four viral pathogens were identified by next-generation sequencing. Conversely, among 18 pathogens identified by the conventional methods, nine pathogens were detected by next-generation sequencing. Candidate pathogens (e.g., coxsackievirus A6 and Chlamydia trachomatis) were detected by next-generation sequencing in four of 10 patients in whom no causative pathogen had been identified by conventional methods. Conclusions: Our results suggest that viral and bacterial infections are common triggers in unexpected cardiopulmonary deterioration in pediatric patients. Next-generation sequencing has the potential to contribute to clarification of the etiology of pediatric critical illness.

    DOI: 10.1097/PCC.0000000000002558

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  33. Comprehensive pathogen detection in sera of Kawasaki disease patients by high-throughput sequencing: a retrospective exploratory study Open Access

    Torii Y., Horiba K., Hayano S., Kato T., Suzuki T., Kawada J.i., Takahashi Y., Kojima S., Okuno Y., Ogi T., Ito Y.

    BMC Pediatrics   20 巻 ( 1 )   2020年10月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BMC Pediatrics  

    Background: Kawasaki disease (KD) is an idiopathic systemic vasculitis that predominantly damages coronary arteries in children. Various pathogens have been investigated as triggers for KD, but no definitive causative pathogen has been determined. As KD is diagnosed by symptoms, several days are needed for diagnosis. Therefore, at the time of diagnosis of KD, the pathogen of the trigger may already be diminished. The aim of this study was to explore comprehensive pathogens in the sera at the acute stage of KD using high-throughput sequencing (HTS). Methods: Sera of 12 patients at an extremely early stage of KD and 12 controls were investigated. DNA and RNA sequences were read separately using HTS. Sequence data were imported into the home-brew meta-genomic analysis pipeline, PATHDET, to identify the pathogen sequences. Results: No RNA virus reads were detected in any KD case except for that of equine infectious anemia, which is known as a contaminant of commercial reverse transcriptase. Concerning DNA viruses, human herpesvirus 6B (HHV-6B, two cases) and Anelloviridae (eight cases) were detected among KD cases as well as controls. Multiple bacterial reads were obtained from KD and controls. Bacteria of the genera Acinetobacter, Pseudomonas, Delfita, Roseomonas, and Rhodocyclaceae appeared to be more common in KD sera than in the controls. Conclusion: No single pathogen was identified in serum samples of patients at the acute phase of KD. With multiple bacteria detected in the serum samples, it is difficult to exclude the possibility of contamination; however, it is possible that these bacteria might stimulate the immune system and induce KD.

    DOI: 10.1186/s12887-020-02380-7

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  34. Metagenomic analysis using next-generation sequencing of pathogens in bronchoalveolar lavage fluid from pediatric patients with respiratory failure Open Access

    Takeuchi S., Kawada J.i., Horiba K., Okuno Y., Okumura T., Suzuki T., Torii Y., Kawabe S., Wada S., Ikeyama T., Ito Y.

    Scientific Reports   9 巻 ( 1 )   2019年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Scientific Reports  

    Next-generation sequencing (NGS) has been applied in the field of infectious diseases. Bronchoalveolar lavage fluid (BALF) is considered a sterile type of specimen that is suitable for detecting pathogens of respiratory infections. The aim of this study was to comprehensively identify causative pathogens using NGS in BALF samples from immunocompetent pediatric patients with respiratory failure. Ten patients hospitalized with respiratory failure were included. BALF samples obtained in the acute phase were used to prepare DNA- and RNA-sequencing libraries. The libraries were sequenced on MiSeq, and the sequence data were analyzed using metagenome analysis tools. A mean of 2,041,216 total reads were sequenced for each library. Significant bacterial or viral sequencing reads were detected in eight of the 10 patients. Furthermore, candidate pathogens were detected in three patients in whom etiologic agents were not identified by conventional methods. The complete genome of enterovirus D68 was identified in two patients, and phylogenetic analysis suggested that both strains belong to subclade B3, which is an epidemic strain that has spread worldwide in recent years. Our results suggest that NGS can be applied for comprehensive molecular diagnostics as well as surveillance of pathogens in BALF from patients with respiratory infection.

    DOI: 10.1038/s41598-019-49372-x

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  35. Serological screening of immunoglobulin M and immunoglobulin G during pregnancy for predicting congenital cytomegalovirus infection Open Access

    Torii Y., Yoshida S., Yanase Y., Mitsui T., Horiba K., Okumura T., Takeuchi S., Suzuki T., Kawada J.I., Kotani T., Yamashita M., Ito Y.

    BMC Pregnancy and Childbirth   19 巻 ( 1 )   2019年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BMC Pregnancy and Childbirth  

    Background: Cytomegalovirus (CMV) is one of the most frequent pathogens for congenital infections. Most cases of congenital CMV infection (cCMV) are asymptomatic at birth, but sensorineural hearing loss (SNHL) or neurodevelopmental delay can appear later in childhood. This prospective study examined the practicability of serological screening for anti-CMV immunoglobulin (Ig) G and anti-CMV IgM in pregnant women. Methods: A total of 11,753 pregnant women were examined for CMV IgG and CMV IgM during the first or second trimester. When IgM was positive, IgG was reevaluated more than two weeks later. When IgG was negative, IgG was reevaluated in the second or third trimester. All neonates from mothers with positive/borderline IgM or IgG seroconversion underwent polymerase chain reaction assay for CMV using urine samples to diagnose cCMV. Levels of IgG and IgM were compared between mothers with and without cCMV. Receiver operating characteristic (ROC) curves for IgM titers were analyzed. Results: Eight of 500 neonates (1.6%) born from mothers with positive IgG and positive IgM, and 3 of 13 neonates (23.1%) born from mothers with IgG seroconversion were diagnosed with cCMV. Neither IgM titers nor IgG titers differed significantly between cCMV and non-cCMV groups. The area under the ROC curve was 0.716 and the optimal cut-off for IgM was 7.28 index (sensitivity = 0.625, specificity = 0.965, positive predictive value = 0.238, negative predictive value = 0.993). Titers of IgG were not frequently elevated in pregnant women with positive IgM during the observation period, including in those with cCMV. All 11 cCMV cases were asymptomatic at birth and none had shown SNHL or developmental delay as of the last regular visit (mean age, 40 months). Conclusions: Seroconversion of CMV IgG and high-titer IgM during early pregnancy are predictors of cCMV. High IgM titer (> 7.28 index) is a predictor despite relatively low sensitivity. Levels of IgG had already plateaued at first evaluation in mothers with cCMV. Maternal screening offered insufficient positive predictive value for diagnosing cCMV, but allowed identifying asymptomatic cCMV cases in an early stage.

    DOI: 10.1186/s12884-019-2360-1

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  36. Identification of potential pathogenic viruses in patients with acute myocarditis using next-generation sequencing

    Takeuchi S., Kawada J.i., Okuno Y., Horiba K., Suzuki T., Torii Y., Yasuda K., Numaguchi A., Kato T., Takahashi Y., Ito Y.

    Journal of Medical Virology   90 巻 ( 12 ) 頁: 1814 - 1821   2018年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Journal of Medical Virology  

    Myocarditis is an inflammatory disease of the myocardium and leads to cardiac dysfunction and heart failure. Although viral infections are considered to be the most common etiology of myocarditis, the identification of the causative virus is still challenging. Recently, next-generation sequencing (NGS) has been applied in the diagnosis of infectious diseases. The aim of the current study was to comprehensively analyze potential pathogenic microorganisms using NGS in the sera of patients with myocarditis. Twelve pediatric and five adult patients hospitalized for acute myocarditis were included. Serum samples in the acute phase were obtained and analyzed using NGS to detect pathogen-derived DNA and RNA. Viral sequence reads were detected in 7 (41%) of the 17 myocarditis patients by NGS. Among these patients, detection of Epstein-Barr virus, human parvovirus B19, torque teno virus, and respiratory syncytial virus reads by NGS was consistent with polymerase chain reaction or antigen test results in one patient each. A large number of human pegivirus reads were detected from one patient by RNA sequencing; however, its pathogenicity to human is unknown. Conversely, the number of detected virus-derived reads was small in most cases, and the pathophysiological role of these viruses remains to be clarified. No significant bacterial or fungal reads other than normal bacterial flora was detected. These data indicate that comprehensive detection of virus-derived DNA and RNA using NGS can be useful for the identification of potential pathogenic viruses in myocarditis.

    DOI: 10.1002/jmv.25263

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  37. Ureteral dilatation detected in magnetic resonance imaging predicts vesicoureteral reflux in children with urinary tract infection Open Access

    Murakami N., Kawada J.i., Watanabe A., Arakawa T., Kano T., Suzuki T., Tanaka R., Kojima D., Kawano Y., Hoshino S., Muramatsu H., Takahashi Y., Sato Y., Koyama M., Natsume J.

    PLoS ONE   13 巻 ( 12 )   2018年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PLoS ONE  

    Objective Urinary tract infection (UTI), one of the most common bacterial infections occurring during infancy and early childhood, is frequently associated with vesicoureteral reflux (VUR). Although several guidelines recommend performing ultrasonography as a screening test, its utility is not adequate and appropriate screening tests are strongly desirable. In this study, we evaluate the use of magnetic resonance imaging (MRI) as a screening test for VUR in children with UTI. Methods We prospectively studied 108 patients with suspected UTI between April 2014 and March 2016. UTI was diagnosed on the basis of diffusion-weighted MRI (DW-MRI) and urine culture findings. We measured ureteral dilatation using MRI in 96 patients with UTI and assessed the relationship between ureteral dilatation in MRI and VUR in 46 patients who underwent voiding cystourethrography (VCUG). Results Among 108 patients, 88 and 8 were diagnosed with upper and lower UTI, respectively. Among 46 patients who underwent VCUG, 23 had VUR (14 low grade and 9 high grade). Patients with ureteral dilatation detected on MRI had VUR more frequently than those without ureteral dilatation (any grades VUR, 71% vs. 32%; P = 0.02; high-grade VUR, 38% vs. 2%, P = 0.007). Overall, ureteral dilatation findings on MRI achieved sensitivity 65.2% and specificity 73.9% as a screening test for VUR. In addition, DW-MRI achieved sensitivity 100% and specificity 81.8% in the diagnosis of upper UTI. Conclusion These findings suggested that MRI is a valuable tool for screening of VUR as well as diagnosis of upper UTI.

    DOI: 10.1371/journal.pone.0209595

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  38. Comprehensive detection of pathogens in immunocompromised children with bloodstream infections by next-generation sequencing Open Access

    Horiba K., Kawada J.I., Okuno Y., Tetsuka N., Suzuki T., Ando S., Kamiya Y., Torii Y., Yagi T., Takahashi Y., Ito Y.

    Scientific Reports   8 巻 ( 1 )   2018年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Scientific Reports  

    Bloodstream infection (BSI) is a severe complication in immunocompromised patients. Next-generation sequencing (NGS) allows us to analyze comprehensively and quantitatively all microorganisms present in a clinical sample. Thirty-five pediatric patients (12 with BSI and 23 with suspected BSI/negative blood culture) were enrolled. Plasma/serum samples were used for sequencing and the results were compared with those from blood culture. Sequencing reads of bacteria isolated in blood culture were identified by NGS in all plasma/serum samples at disease onset. Bacteria isolated in blood culture were identical to the dominant bacteria by NGS in 8 of 12 patients. Bacterial reads per million reads of the sequence depth (BR) > 200 and relative importance values of the dominant bacteria (P1) > 0.5 were employed to determine causative pathogens. Causative pathogens were detected using these criteria in 7 of 12 patients with BSI. Additionally, causative bacteria were detected in the plasma/serum at 7 days before disease onset in two patients with catheter-related BSI. Causative pathogens, including virus, were identified in three patients with suspected BSI. Lastly, a total of 62 resistance genes were detected by NGS. In conclusion, NGS is a new method to identify causative microorganisms in BSI and may predict BSI in some patients.

    DOI: 10.1038/s41598-018-22133-y

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▼全件表示

MISC 27

  1. long-read sequenceによる小児重症呼吸不全患者の網羅的ウイルス検索

    山口 慎, 堀場 千尋, 福田 悠人, 春田 一憲, 武内 俊, 鈴木 高子, 鳥居 ゆか, 河邉 慎司, 伊藤 嘉規, 荻 朋男, 川田 潤一  

    日本小児感染症学会総会・学術集会プログラム・抄録集54回 巻   頁: 189 - 189   2022年11月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  2. ナノポアシークエンサーによる小児中枢神経感染症の病原微生物検出および宿主遺伝子発現解析

    堀場 千尋, 鳥居 ゆか, 山口 慎, 春田 一憲, 奥村 俊彦, 鈴木 高子, 河野 好彦, 川田 潤一, 原 紳也, 荻 朋男, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集54回 巻   頁: 192 - 192   2022年11月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  3. ショートリードおよびロングリードシークエンスを用いた小児中枢神経感染症患者の病原微生物診断

    堀場 千尋, 鳥居 ゆか, 山口 慎, 春田 一憲, 奥村 俊彦, 鈴木 高子, 河野 好彦, 川田 潤一, 伊藤 嘉規, 原 紳也, 荻 朋男  

    感染症学雑誌96 巻 ( 臨増 ) 頁: 120 - 120   2022年3月

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    記述言語:日本語   出版者・発行元:(一社)日本感染症学会  

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  4. 出生時より呼吸障害を呈した新生児における次世代シークエンスを用いた病原微生物の網羅的検索

    奥村 俊彦, 堀場 千尋, 手塚 宜行, 春田 一憲, 山口 慎, 鈴木 高子, 鳥居 ゆか, 川田 潤一, 伊藤 嘉規, 杉山 裕一朗, 佐藤 義朗, 早川 昌弘, 荻 朋男  

    感染症学雑誌96 巻 ( 臨増 ) 頁: 104 - 104   2022年3月

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    記述言語:日本語   出版者・発行元:(一社)日本感染症学会  

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  5. Droplet digital PCR法を用いた先天性サイトメガロウイルス感染症患者の全血中および尿中ウイルスDNA量定量法の確立

    山口 慎, 川田 潤一, 春田 一憲, 堀場 千尋, 鈴木 高子, 鳥居 ゆか, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集53回 巻   頁: 142 - 142   2021年10月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  6. 出生時に呼吸障害を呈した新生児における次世代シークエンスを用いた網羅的病原微生物検索

    奥村 俊彦, 堀場 千尋, 手塚 宜行, 佐藤 義朗, 杉山 裕一朗, 春田 一憲, 山口 慎, 鈴木 高子, 鳥居 ゆか, 川田 潤一, 荻 朋男, 早川 昌弘, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集53回 巻   頁: 125 - 125   2021年10月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  7. バルガンシクロビル治療を行った症候性先天性サイトメガロウイルス感染症における薬剤耐性遺伝子の検出

    鳥居 ゆか, 堀場 千尋, 川田 潤一, 春田 一憲, 山口 慎, 奥村 俊彦, 鈴木 高子, 荻 朋男, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集53回 巻   頁: 145 - 145   2021年10月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  8. 間質性肺疾患およびサルコイドーシス患者における肺微生物叢のメタゲノム解析

    武内 俊, 川田 潤一, 堀場 千尋, 鈴木 高子, 鳥居 ゆか, 伊藤 嘉規  

    感染症学雑誌95 巻 ( 臨増 ) 頁: 210 - 210   2021年4月

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    記述言語:日本語   出版者・発行元:(一社)日本感染症学会  

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  9. 小児ヒトヘルペスウイルス6型関連症における血清・髄液エクソソーム中マイクロRNAの発現解析

    鳥居 ゆか, 山口 慎, 奥村 俊彦, 鈴木 高子, 堀場 千尋, 川田 潤一, 伊藤 嘉規  

    日本小児科学会雑誌125 巻 ( 2 ) 頁: 278 - 278   2021年2月

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    記述言語:日本語   出版者・発行元:(公社)日本小児科学会  

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  10. CIBERSORTを用いた小児急性心筋炎における炎症性細胞浸潤の網羅的解析

    川田 潤一, 武内 俊, 今井 裕, 堀場 千尋, 山口 慎, 奥村 俊彦, 鈴木 高子, 鳥居 ゆか, 安田 和志, 今中 恭子, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集52回 巻   頁: 188 - 188   2020年11月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  11. 院外心肺停止や予期せぬ呼吸/循環不全を呈した小児患者の下気道検体からの次世代シークエンス法による病原微生物の網羅的検出

    武内 俊, 川田 潤一, 堀場 千尋, 山口 慎, 奥村 俊彦, 鈴木 高子, 鳥居 ゆか, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集52回 巻   頁: 190 - 190   2020年11月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  12. 次世代シークエンスデータ解析の効率を向上させる病原微生物予測パイプラインPATHDETの開発

    堀場 千尋, 原 雄一郎, 遠山 美穂, 奥村 俊彦, 鈴木 高子, 鳥居 ゆか, 川田 潤一, 尾崎 紀夫, 荻 朋男, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集52回 巻   頁: 190 - 190   2020年11月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  13. 肝移植後免疫抑制状態における血液中マイクロバイオームダイナミズムの解析

    奥村 俊彦, 堀場 千尋, 武内 俊, 鈴木 高子, 鳥居 ゆか, 川田 潤一, 伊藤 嘉規, 亀井 秀弥, 小倉 靖弘, 荻 朋男  

    感染症学雑誌94 巻 ( 臨増 ) 頁: 300 - 300   2020年3月

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    記述言語:日本語   出版者・発行元:(一社)日本感染症学会  

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  14. 川崎病症例における血清中微生物メタゲノム解析

    鳥居 ゆか, 堀場 千尋, 早野 聡, 加藤 太一, 鈴木 高子, 川田 潤一, 高橋 義行, 小島 勢二, 伊藤 嘉規  

    日本小児科学会雑誌124 巻 ( 2 ) 頁: 223 - 223   2020年2月

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    記述言語:日本語   出版者・発行元:(公社)日本小児科学会  

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  15. 妊婦における抗サイトメガロウイルス抗体スクリーニングの有用性

    鳥居 ゆか, 吉田 茂, 柳瀬 陽一郎, 三井 崇, 堀場 千尋, 奥村 俊彦, 武内 俊, 鈴木 高子, 川田 潤一, 小谷 友美, 山下 守, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集51回 巻   頁: 219 - 219   2019年10月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  16. 肝移植後免疫抑制状態における血液中微生物ゲノム分布ダイナミズムの解析

    奥村 俊彦, 堀場 千尋, 亀井 秀弥, 武内 俊, 鈴木 高子, 鳥居 ゆか, 川田 潤一, 小倉 靖弘, 荻 朋男, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集51回 巻   頁: 132 - 132   2019年10月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  17. 次世代シークエンス法による小児呼吸不全患者の気管支肺胞洗浄液からの病原微生物の網羅的検出

    武内 俊, 川田 潤一, 堀場 千尋, 奥野 友介, 奥村 俊彦, 鈴木 高子, 鳥居 ゆか, 河邉 慎司, 和田 翔, 池山 貴也, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集51回 巻   頁: 181 - 181   2019年10月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  18. 小児発熱性好中球減少症における次世代シークエンス病原微生物診断

    堀場 千尋, 鳥居 ゆか, 原 雄一郎, 嶋田 繭子, 鈴木 高子, 武内 俊, 奥村 俊彦, 川田 潤一, 村松 秀城, 高橋 義行, 荻 朋男, 伊藤 嘉規  

    日本小児感染症学会総会・学術集会プログラム・抄録集51回 巻   頁: 196 - 196   2019年10月

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    記述言語:日本語   出版者・発行元:(一社)日本小児感染症学会  

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  19. 小児重症呼吸不全患者の気管支肺胞洗浄液を用いた次世代シークエンス法による病原微生物の網羅的検出 査読有り

    武内 俊, 川田 潤一, 堀場 千尋, 奥村 俊彦, 鈴木 高子, 鳥居 ゆか, 奥野 友介, 高橋 義行, 伊藤 嘉規, 河邉 慎司, 池山 貴也  

    日本小児科学会雑誌123 巻 ( 8 ) 頁: 1336 - 1336   2019年8月

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    記述言語:日本語   出版者・発行元:(公社)日本小児科学会  

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  20. 小児重症呼吸器感染症患者の気管支肺胞洗浄液からの次世代シークエンスを用いた病原体検出の有用性

    武内 俊, 川田 潤一, 堀場 千尋, 奥村 俊彦, 鈴木 高子, 鳥居 ゆか, 河邉 慎司, 伊藤 嘉規, 池山 貴也  

    感染症学雑誌93 巻 ( 臨増 ) 頁: 335 - 335   2019年3月

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    記述言語:日本語   出版者・発行元:(一社)日本感染症学会  

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  21. 次世代シークエンス解析による発熱性好中球減少症の網羅的病原微生物検出

    堀場 千尋, 鳥居 ゆか, 鈴木 高子, 武内 俊, 奥村 俊彦, 川田 潤一, 伊藤 嘉規, 高橋 義行, 嶋田 繭子, 荻 朋男  

    感染症学雑誌93 巻 ( 臨増 ) 頁: 325 - 325   2019年3月

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    記述言語:日本語   出版者・発行元:(一社)日本感染症学会  

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  22. 次世代シークエンスを用いた急性心筋炎患者の血清検体からの網羅的病原体検出

    武内 俊, 川田 潤一, 奥村 俊彦, 堀場 千尋, 鈴木 高子, 鳥居 ゆか, 安田 和志, 沼口 敦, 加藤 太一, 伊藤 嘉規  

    日本小児科学会雑誌123 巻 ( 2 ) 頁: 315 - 315   2019年2月

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    記述言語:日本語   出版者・発行元:(公社)日本小児科学会  

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  23. 小児腎移植後の不活化4価インフルエンザワクチン接種の有効性と安全性の検討

    山森 一輝, 岩田 誠子, 柴田 雄介, 宮地 悠江, 鈴木 高子, 柴田 元博, 伊藤 嘉規, 多代 篤史  

    日本小児腎不全学会雑誌38 巻   頁: 97 - 100   2018年7月

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    記述言語:日本語   出版者・発行元:日本小児腎不全学会  

    【研究目的】インフルエンザの重症化は小児腎移植患者の生命予後を悪化させるため毎年の予防接種が推奨されている。しかし本邦では小児腎移植患者における不活化4価インフルエンザワクチン(QIV)の有効性や安全性に関する検討は報告されていない。【方法】当院小児科に通院中の腎移植患者で2016~2017シーズンにQIV接種を受けた15症例を対象に接種前後で抗体価を測定し、抗体保有率(SPR)、抗体陽転率(SCR)、幾何平均抗体価(GMT)とその変化率、インフルエンザ診断数、副反応・有害事象を検討した。【結果】全ワクチン株でSPRに有意な上昇はなくSCRも低い水準だった。B型/山形系統のGMTのみ有意な上昇を認めた。重症例は認めず、重篤な副反応・有害事象も認めなかった。【結論】小児腎移植患者へのQIV接種は有効性こそ限定的だが重篤な副反応・有害事象を認めず、安全に接種できると考えられた。(著者抄録)

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  24. 小児急性肝不全・重症急性肝炎症例における次世代シークエンスによる網羅的病原微生物同定

    武内 俊, 川田 潤一, 鈴木 高子, 奥村 俊彦, 堀場 千尋, 鳥居 ゆか, 伊藤 嘉規, 奥野 友介, 梅津 守一郎, 十河 剛, 乾 あやの  

    日本化学療法学会雑誌66 巻 ( Suppl.A ) 頁: 297 - 297   2018年4月

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    記述言語:日本語   出版者・発行元:(公社)日本化学療法学会  

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  25. 小児急性肝不全・重症肝炎の網羅的病原ウイルス検出における次世代シーケンサーの応用

    武内 俊, 川田 潤一, 堀場 千尋, 鈴木 高子, 鳥居 ゆか, 梅津 守一郎, 十河 剛, 乾 あやの, 伊藤 嘉規  

    日本小児科学会雑誌122 巻 ( 2 ) 頁: 298 - 298   2018年2月

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    記述言語:日本語   出版者・発行元:(公社)日本小児科学会  

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  26. 次世代シーケンシングによる血流感染症の微生物ゲノム分布解析と臨床応用

    堀場 千尋, 川田 潤一, 手塚 宜行, 武内 俊, 鈴木 高子, 安藤 将太郎, 神谷 泰子, 鳥居 ゆか, 伊藤 嘉規  

    感染症学雑誌91 巻 ( 臨増 ) 頁: 304 - 304   2017年3月

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    記述言語:日本語   出版者・発行元:(一社)日本感染症学会  

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  27. 小児菌血症患者の病原菌診断における次世代シーケンサーの臨床応用

    堀場 千尋, 川田 潤一, 手塚 宜行, 鈴木 高子, 安藤 将太郎, 神谷 泰子, 鳥居 ゆか, 高橋 義行, 伊藤 嘉規  

    日本小児科学会雑誌121 巻 ( 2 ) 頁: 242 - 242   2017年2月

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    記述言語:日本語   出版者・発行元:(公社)日本小児科学会  

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講演・口頭発表等 6

  1. EBウイルス関連血球貪食性リンパ組織球症のシングルセルシーケンスによる病態解析

    鈴木 高子, 佐藤 好隆, 鳥居 ゆか, 福田 悠人, 春田 一憲, 山口 慎, 奥野 友介, 濱 麻人, 高橋 義行, 木村 宏, 伊藤 嘉規, 川田 潤一

    日本小児科学会雑誌  2023年2月  (公社)日本小児科学会

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    開催年月日: 2023年2月

    記述言語:日本語  

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  2. シングルセルシーケンスを用いたEBウイルス関連血球貪食性リンパ組織球症の病態解析

    鈴木 高子, 佐藤 好隆, 鳥居 ゆか, 福田 悠人, 春田 一憲, 山口 慎, 奥野 友介, 濱 麻人, 木村 宏, 伊藤 嘉規, 川田 潤一

    日本小児感染症学会総会・学術集会プログラム・抄録集  2022年11月  (一社)日本小児感染症学会

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    開催年月日: 2022年11月

    記述言語:日本語  

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  3. 無症候性先天性サイトメガロウイルス感染症19例の長期フォローアップ

    鈴木 高子, 鳥居 ゆか, 城所 博之, 福田 悠人, 春田 一憲, 山口 慎, 川田 潤一, 伊藤 嘉規

    日本小児感染症学会総会・学術集会プログラム・抄録集  2022年11月  (一社)日本小児感染症学会

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    開催年月日: 2022年11月

    記述言語:日本語  

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  4. 肝逸脱酵素上昇によりバルガンシクロビル投薬中断を要した症候性先天性サイトメガロウイルス感染症の1例

    鈴木 高子, 鳥居 ゆか, 城所 博之, 春田 一憲, 山口 慎, 川田 潤一, 伊藤 嘉規

    日本小児感染症学会総会・学術集会プログラム・抄録集  2021年10月  (一社)日本小児感染症学会

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    開催年月日: 2021年10月

    記述言語:日本語  

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  5. 造血細胞移植後小児のキャッチアップ接種と移植細胞ソース別の比較検討

    鈴木 高子, 川田 潤一, 西川 英里, 山口 慎, 奥村 俊彦, 武内 俊, 堀場 千尋, 鳥居 ゆか, 村松 秀城, 高橋 義行, 伊藤 嘉規

    日本小児感染症学会総会・学術集会プログラム・抄録集  2020年11月  (一社)日本小児感染症学会

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    開催年月日: 2020年11月

    記述言語:日本語  

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  6. 次世代シーケンサーによる小児急性肝不全・重症急性肝炎症例からの病原ウイルス検索

    鈴木高子, 川田潤一, 堀場千尋, 梅津守一郎, 十河剛, 奥村俊彦, 武内俊, 鳥居ゆか, 乾あやの, 伊藤嘉規

    第49回日本小児感染症学会  2017年10月22日 

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    会議種別:口頭発表(一般)  

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科研費 3

  1. 慢性活動性EBウイルス病の病態における感染細胞の役割とシングルセル解析の応用

    研究課題/研究課題番号:25K19195  2025年4月 - 2027年3月

    科学研究費助成事業  若手研究

    鈴木 高子

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    担当区分:研究代表者 

    配分額:4680000円 ( 直接経費:3600000円 、 間接経費:1080000円 )

  2. シングルセルシーケンスを用いた小児急性肝不全の病態解析

    研究課題/研究課題番号:23K14974  2023年4月 - 2025年3月

    日本学術振興会  科学研究費助成事業 若手研究  若手研究

    鈴木 高子

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    担当区分:研究代表者 

    配分額:4680000円 ( 直接経費:3600000円 、 間接経費:1080000円 )

    小児急性肝不全は、生存率50-70%と予後不良な疾患で、約半数が成因不明とされている。成因不明の中にも一部ウイルス性が含まれている可能性が指摘されている。小児急性肝不全の病態にはウイルスによる直接的侵襲の他、宿主の感受性や免疫応答が病態に深く関わっていると考えられる。本研究では次世代シーケンスを用い、これらのウイルス性肝障害の症例の蓄積を図るとともに、近年病態解明に応用されているシングルセルシーケンスを用い、血液中の全免疫細胞の遺伝子発現情報を細胞単位で解析し、他の成因による肝障害と比較することで、ウイルス性肝障害の背景にある免疫応答の異常を解明し、早期診断や、新規治療戦略の検索につなげる。
    小児急性肝不全の病態解明のため、小児急性肝炎および急性肝不全のウイルス定量PCR検査などを用いた起因ウイルス検索を行い、起因ウイルスが同定された症例の末梢血から分離された単核球を用い、シングルセルシーケンス解析を行った。
    これまでに、研究の同意が得られた小児急性肝炎3例(EBウイルス2例、アデノウイルス1例)の末梢血単核球が収集され、内1例(EBウイルス)の急性期および回復期検体のシングルセルシーケンス解析を行った。対照として健常成人2例の末梢血単核球を用いたシングルセルシーケンスと比較検討した。解析を行ったのは計4サンプルで、1サンプルあたり、2,239ー3,403細胞の解析が可能であった。EBウイルス感染症に合併した急性肝炎症例の急性期検体では、TUBA1B+STMN1+CD8+T細胞クラスタの増大を認め、他の文献から、本クラスタは肝組織に由来する可能性が示唆された。また、本症例では、CD8陽性T細胞および単球でⅡ型インターフェロンシグナリングの活性化を認めた。
    現時点では1例の急性肝炎症例の解析にとどまっており、他1例が現在外注でのシーケンス待ちである。他のウイルスに起因する急性肝炎や急性肝不全例での解析データとの比較検討が今後求められる。
    小児急性肝炎例の登録が3例あるものの目標数には達しておらず、小児急性肝不全例の登録が現時点でみられない。症例数が当初予定していた症例数には届いていないが、シングルセルシーケンスによる解析を行った全検体で一定数の末梢血単核球の解析が可能であることが確認された。今後の登録症例の解析につなげたい。
    急性肝不全例の登録、解析のため、研究協力機関に本研究についてあらためて周知するとともに、収集された残る2検体の急性肝炎検体のシングルセルシーケンス解析を行い、病態の中心となっている免疫細胞および各細胞での遺伝子発現調節経路を検討する。得られた解析データをまとめ、学会発表および論文投稿をめざす。

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  3. シングルセルシーケンス解析を応用した重症EBウイルス関連疾患の病態解析

    研究課題/研究課題番号:21K20756  2021年8月 - 2023年3月

    日本学術振興会  科学研究費助成事業 研究活動スタート支援  研究活動スタート支援

    鈴木 高子

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    担当区分:研究代表者 

    配分額:3120000円 ( 直接経費:2400000円 、 間接経費:720000円 )

    EBウイルス関連血球貪食性リンパ組織球症(Epstein-Barr virus-associated hemophagocytic lymphohistiocytosis; EBV-HLH)の病態解明のため、異なる背景のEBV-HLH症例3例、EBウイルス(EBV)の典型的初感染像である伝染性単核症(EBV-IM)1例の急性期および回復期の血液検体、さらに対照として健常成人2例の血液検体を用い、シングルセルシーケンスによる解析を行った。1検体あたり2,203-4,912(中央値2,922)細胞/検体、計33,951細胞の末梢血単核球が解析に進むことが可能であった。全血のウイルス核酸定量検査結果で高ウイルス量を示したEBV-HLH3例全例でEBV関連遺伝子の発現を認める細胞群を抽出することが可能であった。一方、ウイルス量が比較的低値であったEBV-IM例では、EBV関連遺伝子の発現は検出されなかった。シングルセルシーケンスのシーケンスデータから、遺伝子発現パターンに基づいたクラスタリングを行い、各クラスタでの発現遺伝子より所属する細胞分画を特定した。EBV関連遺伝子の発現がみられた細胞群について、その所属する細胞分画が従来法で確認されている感染細胞と一致することを確認した。各細胞分画の細胞数の割合を算出し、比較検討を行った。また、同一系列の細胞分画について遺伝子発現パターンの違いを急性期回復期や症例対照間で比較検討を行った。また、EBV感染の有無による遺伝子発現パターンの違いについても比較検討した。

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