Updated on 2025/10/23

写真a

 
KIMURA Seigo
 
Organization
Integrated Research Consortium on Chemical Sciences Designated Assistant Professor
Title
Designated Assistant Professor
External link

Degree 3

  1. Doctor of Pharmaceutical Science in the field of Life Science ( 2023.3   Hokkaido University ) 

  2. Master of Pharmaceutical Science ( 2020.3   Hokkaido University ) 

  3. Bachelor of Pharmaceutical Science ( 2018.3   Hokkaido University ) 

Research Areas 5

  1. Nanotechnology/Materials / Nanobioscience

  2. Life Science / Biomaterials

  3. Life Science / Pharmaceuticals - chemistry and drug development

  4. Life Science / Biomedical engineering

  5. Life Science / Clinical pharmacy  / 薬物送達学

 

Papers 18

  1. <i>In vivo</i> demonstration of enhanced mRNA delivery by cyclic disulfide-containing lipid nanoparticles for facilitating endosomal escape Reviewed Open Access

    Kimura, S; Okada, K; Matsubara, N; Lyu, FJ; Tsutsumi, S; Kimura, Y; Hashiya, F; Inagaki, M; Abe, N; Abe, H

    RSC MEDICINAL CHEMISTRY   Vol. 16 ( 9 ) page: 4122 - 4137   2025.9

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    Authorship:Lead author, Corresponding author   Language:English   Publisher:Rsc Medicinal Chemistry  

    Current LNP technology faces challenges that must be addressed to enhance the functionality of mRNA therapeutics. Recent studies show disulfide-conjugated molecules improve cell membrane permeability. Here, we investigated incorporating cyclic disulfide (CDL) units into lipid components of LNPs to enhance LNP-mRNA performance. A lipid library with branched and unbranched alkyl chains (C16-C20) and tertiary amine groups modified with CDLs was designed. While cellular uptake was unchanged, some mRNA-loaded LNPs with CDLs achieved more than 2-fold higher transfection efficiency than LNPs with MC3 or SM102 alone. Intracellular analysis revealed that the addition of CDL lipids significantly promoted endosomal escape. The CDL-incorporated LNPs administered subcutaneously in mice showed significantly higher luciferase gene expression compared to LNPs without CDL. Additionally, LNPs encapsulating OVA antigen-encoding mRNA induced a potent antitumor response against the EG7-OVA lymphoma model. These results suggest CDL modifications enhance LNP-based mRNA delivery, offering potential for broader therapeutic applications and improved clinical outcomes.

    DOI: 10.1039/d5md00084j

    Open Access

    Web of Science

    Scopus

    PubMed

  2. A new strategy for the extrahepatic delivery of lipid-based nanomedicines: a protein corona-mediated selective targeting system based on an ionizable cationic lipid library Reviewed Open Access

    Younis, MA; Sato, Y; Kimura, S; Harashima, H

    RSC PHARMACEUTICS   Vol. 2 ( 5 ) page: 982 - 1002   2025.9

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    Publisher:Rsc Pharmaceutics  

    Applying lipid nanoparticle (LNP) technology to ribonucleic acid (RNA) nanomedicines was integral to the success of mRNA vaccines against COVID-19. To expand the power of LNP technology, extrahepatic delivery systems have been developed using specific ligands that target the cells in question. However, recent increases in evidence support targeting without the need to attach specific ligands to nanocarriers. In this review, we focused on protein corona-mediated extrahepatic delivery of nanoparticles as an alternative to classic ligand-mediated active targeting. First, the interaction of LNPs with biological components and the impact that the physicochemical properties of LNPs exert on their biological fate are discussed. Then, we highlight a new system that targets activated hepatic stellate cells (aHSCs) as a successful model achieved through intensive optimization of LNPs based on an ionizable cationic lipid library. We also discuss cumulative evidence that support the ligand-free extrahepatic delivery of nanoparticles to a broad diversity of tissues, such as the spleen, lungs, brain, tumors, kidneys, placenta, pancreas, and bone marrow. In conclusion, we propose protein corona-mediated extrahepatic delivery as a new strategy of active targeting for RNA nanomedicines and inspire the future directions in this area.

    DOI: 10.1039/d5pm00079c

    Open Access

    Web of Science

    Scopus

  3. Internal cap-initiated translation for efficient protein production from circular mRNA (FEb, 10.1038/s41587-025-02561-8, 2025) Reviewed Open Access

    Fukuchi, K; Nakashima, Y; Abe, N; Kimura, S; Hashiya, F; Shichino, Y; Liu, YW; Ogisu, R; Sugiyama, S; Kawaguchi, D; Inagaki, M; Meng, ZY; Kajihara, S; Tada, M; Uchida, S; Li, TT; Maity, R; Kawasaki, T; Kimura, Y; Iwasaki, S; Abe, H

    NATURE BIOTECHNOLOGY     2025.7

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    Language:English   Publisher:Nature Biotechnology  

    Correction to: Nature Biotechnologyhttps://doi.org/10.1038/s41587-025-02561-8, published online 19 February 2025. In the version of the article initially published, in Fig. 4b, the IVIS images for “IRES-circ” at 48 h and 72 h were duplicates of the “Cap-circ” images for the same time points due to an error in typesetting. Fig. 4b has now been corrected in the HTML and PDF versions of the article.

    DOI: 10.1038/s41587-025-02758-x

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  4. Internal cap-initiated translation for efficient protein production from circular mRNA Reviewed

    Fukuchi, K; Nakashima, Y; Abe, N; Kimura, S; Hashiya, F; Shichino, Y; Liu, YW; Ogisu, R; Sugiyama, S; Kawaguchi, D; Inagaki, M; Meng, ZY; Kajihara, S; Tada, M; Uchida, S; Li, TT; Maity, R; Kawasaki, T; Kimura, Y; Iwasaki, S; Abe, H

    NATURE BIOTECHNOLOGY     2025.2

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    Language:English   Publisher:Nature Biotechnology  

    Circular mRNA faces challenges in enhancing its translation potential as an RNA therapeutic. Here we introduce two molecular designs that bolster circular mRNA translation through an internal cap-initiated mechanism. The first consists of a circular mRNA with a covalently attached N<sup>7</sup>-methylguanosine (m<sup>7</sup>G) cap through a branching structure (cap-circ mRNA). This modification allows circular mRNA to recruit translation machinery and produce proteins more efficiently than internal ribosome entry site (IRES)-containing circular mRNAs. Combining with an N<sup>1</sup>-methylpseudouridine (m<sup>1</sup>Ψ) modification, cap-circ mRNA exhibits a lower acute immunostimulatory effect, maintaining high translation in mice. The second design features the non-covalent attachment of an m<sup>7</sup>G cap to a circular mRNA through hybridization with an m<sup>7</sup>G cap-containing oligonucleotide, enhancing translation by more than 50-fold. This setup allows circular mRNAs to synthesize reporter proteins upon hybridizing with capped mRNAs or long non-coding RNAs and to undergo rolling circle-type translation. These advancements broaden the therapeutic applications of circular mRNAs by minimizing their molecular size, elevating translation efficiency and facilitating cell-type-selective translation.

    DOI: 10.1038/s41587-025-02561-8

    Web of Science

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    PubMed

  5. Efficient nucleic acid delivery in mammalian and plant cells using precisely engineered cationic perylenes Invited Reviewed

    Shimizu D, Kato E, Fukatsu M, Luca H, Dominik Z, Usami A, Yamada H, Kimura S, Abe H, Sato A, Yagi N, Nakamura M, Amaike M, Itami K

    ChemRxiv     2025

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  6. Development of hydrophobic tag purifying monophosphorylated RNA for chemical synthesis of capped mRNA and enzymatic synthesis of circular mRNA Reviewed Open Access

    Ototake, M; Inagaki, M; Kimura, S; Onda, K; Tada, M; Kawaguchi, D; Murase, H; Fukuchi, K; Gao, YN; Kokubo, K; Acharyya, S; Meng, ZY; Ishida, T; Kawasaki, T; Abe, N; Hashiya, F; Kimura, Y; Abe, H

    NUCLEIC ACIDS RESEARCH   Vol. 52 ( 20 ) page: 12141 - 12157   2024.10

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    Language:English   Publisher:Nucleic Acids Research  

    We developed phosphorylation reagents with a nitrobenzyl hydrophobic tag and used them for 5′-phosphorylation of chemically or transcriptionally synthesized RNA. The capability of hydrophobic tags to synthesize 5′-monophosphorylated RNA was evaluated based on the yield of the desired oligonucleotides, stability of protecting groups during cleavage/deprotection, separation ability in reverse-phase HPLC (RP-HPLC), and deprotection efficiency after RP-HPLC purification. The results showed that a nitrobenzyl derivative with a tert-butyl group at the benzyl position was most suitable for RNA 5′-phosphorylation. Using the developed phosphorylation reagent, we chemically synthesized 5′-phosphorylated RNA and confirmed that it could be purified by RP-HPLC and the following deprotection. In addition, we demonstrated complete chemical synthesis of minimal mRNA by chemical capping of 5′-monophosphorylated RNA. Ribonucleoside 5′-monophosphates with hydrophobic protecting groups have also been developed and used as substrates to transcriptionally synthesize 5′-phosphorylated RNA with >1000 bases. From the mixture of the by-products and the desired RNA, only 5′-monophosphorylated RNA could be effectively isolated by RP-HPLC. Furthermore, monophosphorylated RNA can be converted into circular mRNA via RNA ligase-mediated cyclization. Circular mRNA expression of nanoluciferase in cultured cells and mice. These techniques are important for the production of chemically synthesized mRNA and circular mRNA.

    DOI: 10.1093/nar/gkae847

    Open Access

    Web of Science

    Scopus

    PubMed

  7. Nano-Bio Interactions: Exploring the Biological Behavior and the Fate of Lipid-Based Gene Delivery Systems Reviewed

    Kimura, S; Harashima, H

    BIODRUGS   Vol. 38 ( 2 ) page: 259 - 273   2024.3

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    Authorship:Lead author, Corresponding author   Language:English   Publisher:Biodrugs  

    Gene therapy for many diseases is rapidly becoming a reality, as demonstrated by the recent approval of various nucleic acid-based therapeutics. Non-viral systems such as lipid-based carriers, lipid nanoparticles (LNPs), for delivering different payloads including small interfering RNA, plasmid DNA, and messenger RNA have been particularly extensively explored and developed for clinical uses. One of the most important issues in LNP development is delivery to extrahepatic tissues. To achieve this, various lipids and lipid-like materials are being examined and screened. Several LNP formulations that target extrahepatic tissues, such as the spleen and the lungs have been developed by adjusting the lipid compositions of LNPs. However, mechanistic details of how the characteristics of LNPs affect delivery efficiency remains unclear. The purpose of this review is to provide an overview of LNP-based nucleic acid delivery focusing on LNP components and their structures, as well as discussing biological factors, such as biomolecular corona and cellular responses related to the delivery efficiency.

    DOI: 10.1007/s40259-024-00647-4

    Web of Science

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  8. On the mechanism of tissue-selective gene delivery by lipid nanoparticles Reviewed

    Kimura S, Harashima H

    Journal of Controlled Release     2023.3

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    Authorship:Lead author, Corresponding author  

  9. mRNA-Loaded Lipid Nanoparticles Targeting Immune Cells in the Spleen for Use as Cancer Vaccines Reviewed

    Pharmaceuticals     2022

  10. Non-invasive Gene Delivery across the Blood-Brain Barrier: Present and Future Perspectives Invited Reviewed

    Neural Regen Res     2022

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    Authorship:Lead author, Corresponding author  

  11. Extrahepatic targeting of lipid nanoparticles in vivo with intracellular targeting for future nanomedicines Reviewed

    Advanced Drug Delivery Reviews     2022

  12. GALA-modified Lipid Nanoparticles for the Targeted Delivery of Plasmid DNA to the Lung Endothelium Reviewed

    Molecular Pharmaceutics     2021

  13. Novel lipid combination for delivery of plasmid DNA to immune cells in the spleen Reviewed

    Journal of Controlled Release     2021

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    Authorship:Lead author, Corresponding author  

  14. Lipid Nanoparticles for Cell-Specific in Vivo Targeted Delivery of Nucleic Acids Invited Reviewed

    Biol Pharm Bull     2020

  15. Current Status and Challenges associated with CNS-Targeted Gene Delivery across the BBB Invited Reviewed

    Pharmaceutics     2020

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    Authorship:Lead author, Corresponding author  

  16. Spleen selective enhancement of transfection activities of plasmid DNA driven by octaarginine and an ionizable lipid and its implications for cancer immunization Reviewed

    Journal of Controlled Release     2019

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    Authorship:Lead author  

  17. Synergism between a cell penetrating peptide and a pH-sensitive cationic lipid in efficient gene delivery based on double-coated nanoparticles Reviewed

    Journal of Controlled Release     2018

  18. 長井記念薬学研究奨励支援事業:研究活動の絶対量の確保

    木村 誠悟

    ファルマシア   Vol. 59 ( 10 ) page: 941_1 - 941_1   2023

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    Language:Japanese   Publisher:公益社団法人 日本薬学会  

    何をするにも結果を残すには、それに費やす時間(量)と、やることの質が重要であるのは言うまでもない。研究、特に実験系の分野においては、当該分野の状況・先行研究を理解するための広範な文献調査とそれに基づく周到な実験デザインだけでは不十分で、実際に実験を行う時間の確保が生産性に直結する。貴事業に採択されたことで、博士課程という大事な時期の研究活動の絶対量が確保でき、研究者としてのベースが築けたと思う

    DOI: 10.14894/faruawpsj.59.10_941_1

    CiNii Research

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Presentations 16

  1. 脂質ナノ粒子による免疫細胞への核酸分子送達および免疫療法への展開 Invited

    木村誠悟

    第61回日本移植学会総会  2025.10.9 

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    Event date: 2025.10

    Presentation type:Oral presentation (invited, special)  

  2. Design of lipid materials and compositional optimization of lipid nanoparticles for enhanced mRNA delivery Invited International conference

    Seigo Kimura

    RNA World 2025  2025.9.4 

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    Event date: 2025.9

    Language:English   Presentation type:Oral presentation (invited, special)  

  3. コレステロールの化学構造がLNP-mRNA送達能に与える影響,

    木村誠悟

    日本核酸医薬学会第10年会若手シンポジウム  2025.7.1 

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    Event date: 2025.7

    Presentation type:Symposium, workshop panel (nominated)  

  4. 環状ジスルフィド修飾脂質ナノ粒子によるmRNAの細胞質内送達及びがんワクチンへの応用

    木村誠悟

    日本薬学会第145年会  2025.3.27 

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    Event date: 2025.3

    Presentation type:Oral presentation (general)  

  5. Functional evaluation of PureCap mRNAs by using lipid-based delivery systems

    Seigo Kimura

    2024.7.16 

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    Event date: 2024.7

    Presentation type:Poster presentation  

  6. Novel Ionizable Lipid Nanoparticle Formulations for Delivery of Various Nucleic Acid Molecules

    Seigo Kimura

    2024.7.9 

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    Event date: 2024.7

    Language:English   Presentation type:Oral presentation (general)  

  7. 高効率mRNA送達のための新規機能性脂質ライブラリの評価

    木村誠悟

    日本薬学会第144年会  2024.3.28 

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    Event date: 2024.3

    Presentation type:Oral presentation (general)  

  8. 新規イオン化脂質を用いた高効率mRNA送達システムの開発

    木村誠悟

    第40回メディシナルケミストリーシンポジウム  2023.11.13 

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    Event date: 2023.11

    Presentation type:Poster presentation  

  9. ジスルフィド含有新規脂質を用いたmRNAの細胞内送達

    木村誠悟

    「細胞を創る」研究会16.0  2023.9.25 

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    Event date: 2023.9

    Presentation type:Poster presentation  

  10. Development of a novel in vivo high-throughput screening method for pDNA delivery

    Seigo Kimura

    The 8th Annual Meeting of the Nucleic Acids Therapeutics Society of Japan  2023.7 

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    Event date: 2023.7

    Presentation type:Poster presentation  

  11. Different cellular responses to lipid-based carriers affect tissue/cell-selective gene delivery

    Seigo Kimura

    The 7th Annual Meeting of the Nucleic Acids Therapeutics Society of Japan  2022.8 

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    Event date: 2022.8

    Presentation type:Poster presentation  

  12. On the mechanism of tissue-selective gene transfection by lipid-based carriers International conference

    Seigo Kimura

    Liposome Research Days 2022  2022.6 

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    Event date: 2022.6

    Language:English   Presentation type:Poster presentation  

  13. Spleen-selective Gene Delivery by Engineering Lipid-based Nanocarriers and its Application to Cancer Immunotherapy Invited International conference

    Seigo Kimura

    NANOMEET2021  2021.9 

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    Event date: 2021.9

    Language:English   Presentation type:Oral presentation (invited, special)  

  14. Overview of CNS-Targeted Gene Delivery across the BBB: Non-Invasive Delivery Strategies Invited International conference

    Seigo Kimura

    Drug Delivery Webinar 2021  2021.3 

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    Event date: 2021.3

    Language:English   Presentation type:Oral presentation (invited, special)  

  15. Development of DDS technology for nucleic acid drugs and gene therapeutics- From control of pharmacokinetics and intracellular trafficking to therapeutic application-”, Presentation title “Development of the efficient and selective delivery carrier of plasmid DNA to immune cells in the spleen and its potential applicability to DNA vaccines

    Seigo Kimura

    The 141st Annual Meeting of the Pharmaceutical Society of Japan  2021.3 

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    Event date: 2021.3

    Presentation type:Symposium, workshop panel (public)  

  16. Novel Spleen-Selective Lipid Nanoparticles as Plasmid DNA Cancer Vaccine

    Seigo Kimura

    Liposome Research Days 2019  2019.9 

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    Event date: 2019.9

    Language:English   Presentation type:Poster presentation  

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KAKENHI (Grants-in-Aid for Scientific Research) 2

  1. Molecular design and application of circular RNAs using novel translation induction techniques

    Grant number:25H00427  2025.4 - 2030.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (S)

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    Authorship:Coinvestigator(s) 

  2. Molecular Design-Driven Development of a Brain-Targeted Nucleic Acid Delivery System via DNA Barcoding

    Grant number:25K21572  2025.4 - 2028.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Early-Career Scientists

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    Authorship:Principal investigator 

    Grant amount:\4810000 ( Direct Cost: \3700000 、 Indirect Cost:\1110000 )