Updated on 2024/04/02

写真a

 
HIRAOKA Haruka
 
Organization
Graduate School of Science Designated assistant professor
Title
Designated assistant professor

Degree 3

  1. Doctor (Science) ( 2020.3   Osaka University ) 

  2. Master (Science) ( 2016.3   Osaka University ) 

  3. Bachelor (Science) ( 2014.3   Osaka University ) 

 

Papers 10

  1. Development of PCR primers enabling the design of flexible sticky ends for efficient concatenation of long DNA fragments

    Nomura, K; Onda, K; Murase, H; Hashiya, F; Ono, Y; Terai, G; Oka, N; Asai, K; Suzuki, D; Takahashi, N; Hiraoka, H; Inagaki, M; Kimura, Y; Shimizu, Y; Abe, N; Abe, H

    RSC CHEMICAL BIOLOGY     2024.2

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    Publisher:RSC Chemical Biology  

    We developed chemically modified PCR primers that allow the design of flexible sticky ends by introducing a photo-cleavable group at the phosphate moiety. Nucleic acid derivatives containing o-nitrobenzyl photo-cleavable groups with a tert-butyl group at the benzyl position were stable during strong base treatment for oligonucleotide synthesis and thermal cycling in PCR reactions. PCR using primers incorporating these nucleic acid derivatives confirmed that chain extension reactions completely stopped at position 1 before and after the site of the photo-cleavable group was introduced. DNA fragments of 2 and 3 kbp, with sticky ends of 50 bases, were successfully concatenated with a high yield of 77%. A plasmid was constructed using this method. Finally, we applied this approach to construct a 48.5 kbp lambda phage DNA, which is difficult to achieve using restriction enzyme-based methods. After 7 days, we were able to confirm the generation of DNA of the desired length. Although the efficiency is yet to be improved, the chemically modified PCR primer offers potential to complement enzymatic methods and serve as a DNA concatenation technique.

    DOI: 10.1039/d3cb00212h

    Web of Science

    Scopus

  2. Topological capture of mRNA for silencing gene expression Reviewed

    Lyu Fangjie, Tomita Takashi, Abe Naoko, Hiraoka Haruka, Hashiya Fumitaka, Nakashima Yuko, Kajihara Shiryu, Tomoike Fumiaki, Shu Zhaoma, Onizuka Kazumitsu, Kimura Yasuaki, Abe Hiroshi

    CHEMICAL COMMUNICATIONS   Vol. 59 ( 77 ) page: 11564 - 11567   2023.9

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1039/d2cc06189a

    Web of Science

    Scopus

    PubMed

  3. The Effect of γ Phosphate Modified Deoxynucleotide Substrates on PCR Activity and Fidelity Reviewed

    Hashiya Fumitaka, Murase Hirotaka, Chandela Akash, Hiraoka Haruka, Inagaki Masahito, Nakashima Yuko, Abe Naoko, Nakamura Mayu, Terai Goro, Kimura Yasuaki, Ando Kaori, Oka Natsuhisa, Asai Kiyoshi, Abe Hiroshi

    CHEMBIOCHEM   Vol. 24 ( 14 ) page: e202200572   2023.6

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1002/cbic.202200572

    Web of Science

    Scopus

    PubMed

  4. Cap analogs with a hydrophobic photocleavable tag enable facile purification of fully capped mRNA with various cap structures Reviewed

    Inagaki Masahito, Abe Naoko, Li Zhenmin, Nakashima Yuko, Acharyya Susit, Ogawa Kazuya, Kawaguchi Daisuke, Hiraoka Haruka, Banno Ayaka, Meng Zheyu, Tada Mizuki, Ishida Tatsuma, Lyu Pingxue, Kokubo Kengo, Murase Hirotaka, Hashiya Fumitaka, Kimura Yasuaki, Uchida Satoshi, Abe Hiroshi

    NATURE COMMUNICATIONS   Vol. 14 ( 1 ) page: 2657   2023.5

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1038/s41467-023-38244-8

    Web of Science

    Scopus

    PubMed

  5. Creation of single molecular conjugates of metal-organic cages and DNA Reviewed

    Nakajo Toshinobu, Kusaka Shinpei, Hiraoka Haruka, Nomura Kohei, Matsubara Noriaki, Baba Rintaro, Yoshida Yuki, Nakamoto Kosuke, Honma Masakazu, Iguchi Hiroaki, Uchihashi Takayuki, Abe Hiroshi, Matsuda Ryotaro

    CHEMICAL COMMUNICATIONS   Vol. 59 ( 33 ) page: 4974 - 4977   2023.4

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1039/d3cc00460k

    Web of Science

    Scopus

    PubMed

  6. 特集 COVID-19パンデミック 振り返りと将来への備え 【コラム】 ❷mRNAワクチンの現在と未来 Invited

    平岡 陽花, 阿部 洋

    総合診療   Vol. 33 ( 1 ) page: 84 - 86   2023.1

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    Authorship:Lead author   Language:Japanese   Publisher:株式会社医学書院  

    DOI: 10.11477/mf.1429204124

    CiNii Research

  7. ATP levels influence cell movement during the mound phase in Dictyostelium discoideum as revealed by ATP visualization and simulation Reviewed

    Hiraoka Haruka, Wang Jiewen, Nakano Tadashi, Hirano Yasuhiro, Yamazaki Shinichi, Hiraoka Yasushi, Haraguchi Tokuko

    FEBS OPEN BIO   Vol. 12 ( 11 ) page: 2042 - 2056   2022.11

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    Authorship:Lead author, Corresponding author   Language:English  

    DOI: 10.1002/2211-5463.13480

    Web of Science

    Scopus

    PubMed

  8. A 2 & PRIME;-modified uridine analog, 2'-O-(methylthiomethoxy)methyl uridine, for siRNA applications Reviewed International coauthorship

    Lyu Fangjie, An Seongjin, Kobayashi Yoshiaki, Nomura Kohei, Baba Rintaro, Abe Naoko, Hiraoka Haruka, Hashiya Fumitaka, Shu Zhaoma, Ui-Tei Kumiko, Kimura Yasuaki, Abe Hiroshi

    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS   Vol. 74   page: 128939   2022.10

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  9. Antisense Oligonucleotide Modified with Disulfide Units Induces Efficient Exon Skipping in <i>mdx</i> Myotubes through Enhanced Membrane Permeability and Nucleus Internalization Reviewed International coauthorship

    Hiraoka Haruka, Shu Zhaoma, Tri Le Bao, Masuda Keiko, Nakamoto Kosuke, Fangjie Lyu, Abe Naoko, Hashiya Fumitaka, Kimura Yasuaki, Shimizu Yoshihiro, Veedu Rakesh N., Abe Hiroshi

    CHEMBIOCHEM   Vol. 22 ( 24 ) page: 3437 - 3442   2021.12

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    Authorship:Lead author   Language:English  

    DOI: 10.1002/cbic.202100413

    Web of Science

    Scopus

    PubMed

  10. Intracellular ATP levels influence cell fates in <i>Dictyostelium discoideum</i> differentiation Reviewed

    Hiraoka Haruka, Nakano Tadashi, Kuwana Satoshi, Fukuzawa Masashi, Hirano Yasuhiro, Ueda Masahiro, Haraguchi Tokuko, Hiraoka Yasushi

    GENES TO CELLS   Vol. 25 ( 5 ) page: 312 - 326   2020.5

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1111/gtc.12763

    Web of Science

    Scopus

    PubMed

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Books 2

  1. 核酸医薬・mRNA医薬の製造分析の基礎と基盤技術開発

    乙竹真美、平岡陽花、阿部洋( Role: Contributor ,  翻訳反応を最大化するための合成mRNAの分子設計)

    CMCリサーチ  2023.2 

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    Language:Japanese Book type:Scholarly book

  2. 最先端ナノライフシステム研究

    平岡陽花、阿部洋( Role: Contributor ,  ジスルフィド修飾による核酸の機能向上と医薬応用)

    2022  ( ISBN:9784863455207

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    Language:Japanese Book type:Textbook, survey, introduction

KAKENHI (Grants-in-Aid for Scientific Research) 2

  1. Development of membrane-permeable oligo nucleotide and clarification of the uptake mechanism

    Grant number:21K14750  2021.4 - 2024.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Early-Career Scientists

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    Authorship:Principal investigator 

    Grant amount:\4420000 ( Direct Cost: \3400000 、 Indirect Cost:\1020000 )

  2. Visualization of the intracellular dynamics of artificial mRNAs

    Grant number:20K22704  2020.9 - 2022.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Research Activity Start-up

    Hiraoka Haruka

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    Authorship:Principal investigator 

    Grant amount:\2860000 ( Direct Cost: \2200000 、 Indirect Cost:\660000 )

    In this research theme, I tried to develop the RNA imaging method using fluorescence nucleic acid probe. The nucleic acid probe used for bacteria in previous research could not be used in human cells as such short oligonucleotide easily permeated into nuclei and rarely bound with target mRNA in cytosol. Therefore, instead of using the nucleic acid probe, I currently deal with the development of fluorescence mRNA composed with fluorescence nucleotides. I also achieved the intracellular delivery of the nucleic acid probe by chemical modification. Previously developed membrane-permeable oligonucleotide including 5 repeats of disulfide modification units has limited use due to their high hydrophobicity. This study reported circular disulfide group as promising modification; it enables the efficient intracellular delivery with smaller number of units.