Faculty Profiles - SHIBATA, Hideki

Papers - SHIBATA, Hideki

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Autolytic activity of human calpain 7 is enhanced by ESCRT-III-related protein IST1 through MIT-MIM interaction. Reviewed

Yohei Osako, Yuki Maemoto, Ryohei Tanaka, Hironori Suzuki, Hideki Shibata, Masatoshi Maki

FEBS J. Vol. 277 ( 21 ) page： 4412-4426 2010.11

*The ALG-2 binding site in Sec31A influences the retention kinetics of Sec31A at the endoplasmic reticulum exit sites as revealed by live-cell time-lapse imaging. Reviewed

Shibata H, Inuzuka T, Yoshida H, Sugiura H, Wada I, Maki M.

Biosci Biotechnol Biochem. Vol. 74 ( 9 ) page： 1819-1826 2010.9

Authorship：Lead author Language：English Publishing type：Research paper (scientific journal)

ALG-2, a member of the penta-EF-hand protein family, interacts Ca²+-dependently with a COPII component, Sec31A. In this study, we first established HeLa cells stably expressing green fluorescent protein-fused ALG-2 (GFP-ALG-2) and red fluorescent protein-fused Sec31A (Sec31A-RFP). After inducing Ca²+-mobilization, the cytoplasmic distribution of GFP-ALG-2 changed from a diffuse to a punctate pattern, which extensively overlapped with the Sec31A-RFP-positive structures, indicating that ALG-2 is recruited to the endoplasmic reticulum exit sites (ERES) in living cells. Next, overlay experiments with biotin-labeled ALG-2 were done to dissect the ALG-2 binding site (ABS). They revealed that a sequence comprising amino acid residues 839-851 in the Pro-rich region was necessary and sufficient for direct binding to ALG-2. Finally, fluorescence recovery after photobleaching analysis indicated that the ABS deletion reduced the high-affinity population of Sec31A to the ERES, suggesting that the ABS is one of the key determinants of the retention kinetics of Sec31A at ERES.

Distinct functions of human MVB12A and MVB12B in the ESCRT-I dependent on their posttranslational modifications. Reviewed

Takumi Tsunematsu, Emiko Yamauchi, Hideki Shibata, Masatoshi Maki, Takeshi Ohta, Hiroaki Konishi

Biochem. Biophys. Res. Commun. Vol. 399 ( 2 ) page： 232-237 2010.8

Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition. Reviewed

Tatsutoshi Inuzuka, Hironori Suzuki, Masato Kawasaki, Hideki Shibata, Soichi Wakatsuki, Masatoshi Maki

BMC Struct. Biol. Vol. 10 2010.8

*Penta-EF-hand protein ALG-2 functions as a Ca2+-dependent adaptor that bridges Alix and TSG101. Reviewed

Okumura M, Ichioka F, Kobayashi R, Suzuki H, Yoshida H, Shibata H, Maki M.

Biochem Biophys Res Commun. Vol. 386 ( 1 ) page： 237-241 2009.8

The mechanism of Ca2+-dependent recognition of Alix by ALG-2: insights from X-ray crystal structures. Reviewed

Suzuki H, Kawasaki M, Inuzuka T, Okumura M, Kakiuchi T, Shibata H, Wakatsuki S, Maki M.

Biochem Soc Trans. Vol. 37 ( Pt1 ) page： 190-194 2009.2

Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2. Reviewed

Hironori Suzuki, Masato Kawasaki, Tatsutoshi Inuzuka, Mayumi Okumura, Takeshi Kakiuchi, Hideki Shibata, Soichi Wakatsuki, Masatoshi Maki

Acta Crystallogr Sect F Struct Biol Cryst Commun. Vol. 64 ( Pt11 ) page： 974-977 2008.11

*Structural basis for Ca2+-dependent formation of ALG-2/Alix peptide complex: Ca2+/EF3-driven arginine switch mechanism. Reviewed

Hironori Suzuki, Masato Kawasaki, Tatsutoshi Inuzuka, Mayumi Okumura, Takeshi Kakiuchi, Hideki Shibata, Soichi Wakatsuki, Masatoshi Maki

Structure Vol. 16 ( 10 ) page： 1562-1573 2008.10

*Human calpain7/PalBH associates with a subset of ESCRT-III-related proteins in its N-terminal region and partly localizes to endocytic membrane compartments. Reviewed

Chiharu Yorikawa, Emi Takaya, Yohei Osako, Ryohei Tanaka, Yoshinori Terasawa, Takao Hamakubo, Yasuhiro Mochizuki, Hiroko Iwanari, Tatsuhiko Kodama, Tatsuya Maeda, Kiyotaka Hitomi, Hideki Shibata, Masatoshi Maki

J. Biochem. Vol. 143 ( 6 ) page： 731-745 2008.6

*Identification of Alix-type and Non-Alix-type ALG-2-binding sites in human phospholipid scramblase 3: differential binding to an alternatively spliced isoform and amino acid-substituted mutants. Reviewed

Hideki Shibata, Hironori Suzuki, Takeshi Kakiuchi, Tatsutoshi Inuzuka, Haruna Yoshida, Takako Mizuno, Masatoshi Maki

J. Biol. Chem. Vol. 283 ( 15 ) page： 9623-9632 2008.4

Brox, a novel farnesylated Bro1 domain-containing protein that associates with charged multivesicular body protein 4 (CHMP4). Reviewed

Fumitaka Ichioka, Ryota Kobayashi, Keiichi Katoh, Hideki Shibata, Masatoshi Maki

FEBS J. Vol. 275 ( 4 ) page： 682-692 2008.2

Identification of substrates for transglutaminase in Physarum polycephalum, an acellular slime mold, upon cellular mechanical damage. Reviewed

Fumitaka Wada, Hiroki Hasegawa, Akio Nakamura, Yoshiaki Sugimura, Yoshiki Kawai, Narie Sasaki, Hideki Shibata, Masatoshi Maki, Kiyotaka Hitomi

FEBS J. Vol. 274 ( 11 ) page： 2766-2777 2007.4

*ALG-2 directly binds Sec31A and localizes at endoplasmic reticulum exit sites in a Ca2+-dependent manner. Reviewed

Hideki Shibata, Hironori Suzuki, Haruna Yoshida, Masatoshi Maki

Biochem. Biophys. Res. Commun. Vol. 353 ( 3 ) page： 756-763 2007.2

HD-PTP and Alix share some membrane-traffic related proteins that interact with their Bro1 domains or proline-rich regions. Reviewed

Fumitaka Ichioka, Emi Takaya, Hironori Suzuki, Sachiko Kajigaya, Vladimir L. Buchman, Hideki Shibata, Masatoshi Maki

Arch. Biochem. Biophys. Vol. 457 ( 2 ) page： 142-149 2007.1

The penta-EF-hand protein ALG-2 and its interacting proteins. Reviewed

Masatoshi Maki, Hideki Shibata

Calcium Binding Proteins Vol. 2 page： 4-10 2007

CHMP7, a novel ESCRT-III-related protein, associates with CHMP4b and functions in the endosomal sorting pathway. Reviewed

Mio Horii, Hideki Shibata, Ryota Kobayashi, Keiichi Katoh, Chiharu Yorikawa, Jiro Yasuda, Masatoshi Maki

Biochem. J. Vol. 400 ( 1 ) page： 23-32 2006.11

Reevaluation of the Predicted Gene Structure of Dictyostelium Cyctatin A3 (cpiC) by Nucleotide Sequence Determination of its cDNA and its Phylogenetic Position in the Cyctatin Superfamily Reviewed

Medhat S. El-Halawany, Hideki Shibata, Kiyotaka Hitomi, Masatoshi Maki

Molecular Biology Reports Vol. 32 ( 4 ) page： 257-264 2005.12

The penta-EF-hand protein ALG-2 interacts directly with the ESCRT-I component TSG101, and Ca²⁺-dependently co-localizes to aberrant endosomes with dominant-negative AAA ATPase SKD1/Vps4B Reviewed

Keiichi Katoh, Hidenori Suzuki, Yoshinori Terasawa, Takako Mizuno, Jiro Yasuda, Hideki Shibata, Masatoshi Maki

Biochemical Journal Vol. 391 ( Pt 3 ) page： 677-685 2005.11

Identification of Rab GTPase-Activating Protein-Like Protein (RabGAPLP) as a Novel Alix/AIP1-Interacting Protein Reviewed

Fumitaka Ichioka, Mio Horii, Keiichi Katoh, Yoshinori Terasawa, Hideki Shibata, Masatoshi Maki

Bioscience, Biotechnology, and Biochemistry Vol. 69 ( 4 ) page： 861-865 2005.4

Human CHMP6, a myristoylated ESCRT-III protein, interacts directly with an ESCRT-II component EAP20 and regulates endosomal cargo sorting Reviewed

Chiharu Yorikawa, Hideki Shibata, Satoshi Waguri, Kazumi Hatta, Mio Horii, Keiichi Katoh, Toshihide Kobayashi, Yasuo Uchiyama, Masatoshi Maki

Biochemical Journal Vol. 387 ( Pt 1 ) page： 17-26 2005.4

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Papers - SHIBATA, Hideki