Papers - ASHIKARI, Motoyuki
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Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?
Tong Shuai, Ashikari Motoyuki, Nagai Keisuke, Pedersen Ole
RICE Vol. 16 ( 1 ) 2023.12
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Designing rice panicle architecture via developmental regulatory genes
Agata Ayumi, Ashikari Motoyuki, Sato Yutaka, Kitano Hidemi, Hobo Tokunori
BREEDING SCIENCE 2023.3
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REGULATOR OF AWN ELONGATION 3 is responsible for loss of awns during African rice domestication. Reviewed International coauthorship
Kanako Bessho-Uehara, Kengo Masuda, Diane R. Wang, Rosalyn B. Angeles-Shim, Keisuke Obara, Keisuke Nagai, Riri Murase, Shin-ichiro Aoki, Tomoyuki Furuta, Kotaro Miura, Jianzhong Wu, Yoshiyuki Yamagata, Hideshi Yasui, Michael Kantar, Atsushi Yoshimura, Takumi Kamura, Susan R. McCouch, Motoyuki Ashikari.
PNAS Vol. 120 ( 4 ) page： e2207105120 2023.1
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Deep Fluorescence Observation in Rice Shoots via Clearing Technology. Reviewed
Yoko Niimi, Keisuke Nagai, Motoyuki Ashikari, Yoko Mizuta
Journal of Visualized Experiments 2022.6
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SNORKEL Genes Relating to Flood Tolerance Were Pseudogenized in Normal Cultivated Rice Reviewed
Keisuke Nagai, Yusuke Kurokawa, Yoshinao Mori, Anzu Minami, Stefan Reuscher, Jianzhong Wu, Takashi Matsumoto, Motoyuki Ashikari.
Plants Vol. 11 ( 3 ) page： 376 2022.2
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Noninvasive imaging of hollow structures and gas movement revealed the gas partial-pressure-gradient-driven long-distance gas movement in the aerenchyma along the leaf blade to submerged organs in rice
Yin Yong-Gen, Mori Yoshinao, Suzui Nobuo, Kurita Keisuke, Yamaguchi Mitsutaka, Miyoshi Yuta, Nagao Yuto, Ashikari Motoyuki, Nagai Keisuke, Kawachi Naoki
NEW PHYTOLOGIST Vol. 232 ( 5 ) page： 1974 - 1984 2021.12
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Marker-Assisted Introgression and Stacking of Major QTLs Controlling Grain Number (Gn1a) and Number of Primary Branching (WFP) to NERICA Cultivars
Reyes Vincent P., Angeles-Shim Rosalyn B., Mendioro Merlyn S., Manuel Ma Carmina C., Lapis Ruby S., Shim Junghyun, Sunohara Hidehiko, Nishiuchi Shunsaku, Kikuta Mayumi, Makihara Daigo, Jena Kshirod K., Ashikari Motoyuki, Doi Kazuyuki
PLANTS-BASEL Vol. 10 ( 5 ) 2021.5
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Exploring the Loci Responsible for Awn Development in Rice through Comparative Analysis of All AA Genome Species
Bessho-Uehara Kanako, Yamagata Yoshiyuki, Takashi Tomonori, Makino Takashi, Yasui Hideshi, Yoshimura Atsushi, Ashikari Motoyuki
PLANTS-BASEL Vol. 10 ( 4 ) 2021.4
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Fine mapping and characterization of two novel quantitative trait loci for early seedling growth in rice
Cheng Peng, Cao Ling-Jie, Bai Chen, Ashikari Motoyuki, Song Xian-Jun
PLANTA Vol. 253 ( 2 ) 2021.2
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*Antagonistic regulation of the gibberellic acid response during stem growth in rice
Nagai Keisuke, Mori Yoshinao, Ishikawa Shin, Furuta Tomoyuki, Gamuyao Rico, Niimi Yoko, Hobo Tokunori, Fukuda Moyuri, Kojima Mikiko, Takebayashi Yumiko, Fukushima Atsushi, Himuro Yasuyo, Kobayashi Masatomo, Ackley Wataru, Hisano Hiroshi, Sato Kazuhiro, Yoshida Aya, Wu Jianzhong, Sakakibara Hitoshi, Sato Yutaka, Tsuji Hiroyuki, Akagi Takashi, Ashikari Motoyuki
NATURE Vol. 584 ( 7819 ) page： 109 - + 2020.8
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Diverse panicle architecture results from various combinations ofPrl5/GA20ox4 and Pbl6/APO1alleles
Agata Ayumi, Ando Koki, Ota Sadayuki, Kojima Mikiko, Takebayashi Yumiko, Takehara Sayaka, Doi Kazuyuki, Ueguchi-Tanaka Miyako, Suzuki Takamasa, Sakakibara Hitoshi, Matsuoka Makoto, Ashikari Motoyuki, Inukai Yoshiaki, Kitano Hidemi, Hobo Tokunori
COMMUNICATIONS BIOLOGY Vol. 3 ( 1 ) 2020.6
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Molecular mechanisms and future improvement of submergence tolerance in rice. Invited Reviewed
Kuroha Takeshi, Ashikari Motoyuki.
Vol. 55 ( 1 ) 2020.4
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Marker-Assisted Introgression of Quantitative Resistance Gene pi21 Confers Broad Spectrum Resistance to Rice Blast
Angeles-Shim Rosalyn B., Reyes Vincent P., del Valle Marilyn M., Lapis Ruby S., Shim Junghyun, Sunohara Hidehiko, Jena Kshirod K., Ashikari Motoyuki, Doi Kazuyuki
RICE SCIENCE Vol. 27 ( 2 ) page： 113 - 123 2020.3
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Metabolite and Phytohormone Profiling Illustrates Metabolic Reprogramming as an Escape Strategy of Deepwater Rice during Partially Submerged Stress
Fukushima Atsushi, Kuroha Takeshi, Nagai Keisuke, Hattori Yoko, Kobayashi Makoto, Nishizawa Tomoko, Kojima Mikiko, Utsumi Yoshinori, Oikawa Akira, Seki Motoaki, Sakakibara Hitoshi, Saito Kazuki, Ashikari Motoyuki, Kusano Miyako
METABOLITES Vol. 10 ( 2 ) 2020.2
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Evaluation of Backcrossed Pyramiding Lines of the Yield-related Gene and the Bacterial Leaf Blight Resistant Genes. Invited Reviewed
Yamada S., Kurokawa Y., Nagai K., Shim R., Yasui H., Furuya N., Yoshimura A., Doi K., Ashikari M., Sunohara H.
J Intl Cooper Agric 2020
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Molecular mechanisms and future improvement of submergence tolerance in rice. Invited Reviewed
Kuroha Takeshi, Ashikari Motoyuki
2020
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Sucrose affects the developmental transition of rhizomes in Oryza longistaminata (vol 131, pg 693, 2018)
Bessho-Uehara Kanako, Nugroho Jovano Erris, Kondo Hirono, Angeles-Shim Rosalyn B., Ashikari Motoyuki
JOURNAL OF PLANT RESEARCH Vol. 132 ( 4 ) page： 569 - 569 2019.7
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Diel O-2 Dynamics in Partially and Completely Submerged Deepwater Rice: Leaf Gas Films Enhance Internodal O-2 Status, Influence Gene Expression and Accelerate Stem Elongation for 'Snorkelling' during Submergence
Mori Yoshinao, Kurokawa Yusuke, Koike Masaya, Malik Al Imran, Colmer Timothy David, Ashikari Motoyuki, Pedersen Ole, Nagai Keisuke
PLANT AND CELL PHYSIOLOGY Vol. 60 ( 5 ) page： 973 - 985 2019.5
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*Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding
Kuroh Takeshi, Nagai Keisuke, Gamuyao Rico, Wang Diane R., Furuta Tomoyuki, Nakamori Masanari, Kitaoka Takuya, Adachi Keita, Minami Anzu, Mori Yoshinao, Mashiguchi Kiyoshi, Seto Yoshiya, Yamaguchi Shinjiro, Kojima Mikiko, Sakakibara Hitoshi, Wu Jianzhong, Ebana Kaworu, Mitsuda Nobutaka, Ohme-Takagi Masaru, Yanagisawa Shuichi, Yamasaki Masanori, Yokoyama Ryusuke, Nishitani Kazuhiko, Mochizuki Toshihiro, Tamiya Gen, McCouch Susan R., Ashikari Motoyuki
SCIENCE Vol. 361 ( 6398 ) page： 181-185 2018.7
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Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.
Kurokawa Y., Nagai N., Hung P.D., Shimazaki K., Qu H., Mori Y., Toda Y., Kuroha K., Hayashi N., Aiga S., Itoh J., Yoshimura A., Sasaki-Sekimoto Y., Ohta H., Shimojima M., Malik A.I., Pedersen O., Colmer T.D. Ashikari M.
New Phytologist 2018.3
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Introgression of a functional epigenetic OsSPL14(WFP) allele into elite indica rice genomes greatly improved panicle traits and grain yield
Kim Sung-Ryul, Ramos Joie M., Hizon Rona Joy M., Ashikari Motoyuki, Virk Parminder S., Torres Edgar A., Nissila Eero, Jena Kshirod K.
SCIENTIFIC REPORTS Vol. 8 2018.3
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Time-course transcriptomics analysis reveals key responses of submerged deepwater rice to flooding.
Minami A, Yano K, Gamuyao R, Nagai K, Kuroha T, Ayano M, Nakamori M, Koike M, Kondo Y, Niimi Y, Kuwata K, Suzuki T, Higashiyama T, Takebayashi Y, Kojima M, Sakakibara H, Toyoda A, Fujiyama A, Kurata N, Ashikari M, Reuscher S.
Plant Physiol. 2018.2
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Breeding Applications and Molecular Basis of Semi-dwarfism in Rice
Nagai K., Hirano K., Angeles-Shim R.B., Ashikari M.
Rice Genomics, Genetics and Breeding page： 155-176 2018.2
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Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species
Reuscher Stefan, Furuta Tomoyuki, Bessho-Uehara Kanako, Cosi Michele, Jena Kshirod K., Toyoda Atsushi, Fujiyama Asao, Kurata Nori, Ashikari Motoyuki
COMMUNICATIONS BIOLOGY Vol. 1 2018
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eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice
Kuroha T., Nagai K., Kurokawa Y., Nagamura Y., Kusano M., Yasui H., Ashikari M., Fukushima A.
Front. Plant Sci. Vol. 8 page： 1753 2017.10
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Construction of rice chromosome segment substitution lines harboring Oryza barthii genome and evaluation of yield-related traits.
Bessho-Uehara K., Furuta T., Masuda K., Yamada S., Angeles-Shim R., Ashikari M., Takashi T.
Breed Sci. Vol. 67 ( 4 ) page： 408 - 415 2017.9
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A new outlook on sporadic flowering of bamboo. Invited Reviewed
Gamuyao Rico, Nagai Keisuke, Ashikari Motoyuki, Reuscher Stefan.
2017.7
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Gamuyao R., Nagai K., Ayano M., Mori Y., Minami A., Kojima M., Suzuki T., Sakakibara H., Higashiyama T., Ashikari M., Reuscher S.
Plant Cell Physiol Vol. 58 ( 4 ) page： 702 - 716 2017.4
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A single base change explains the independent origin of and selection for the nonshattering gene in African rice domestication.
Win KT., Yamagata Y., Doi K., Uyama K., Nagai Y., Toda Y., Kani T., Ashikari M., Yasui H., Yoshimura A.
New Phytologist Vol. 213 ( 4 ) page： 1925 - 1935 2017.3
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Adapting Genotyping-by-Sequencing for Rice F2 Populations.
Furuta Tomoyuki, Ashikari Motoyuki, Jena Kshirod K., Doi Kazuyuki, Reuscher Stefan
G3-GENES GENOMES GENETICS Vol. 7 ( 3 ) page： 881-893 2017.3
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Development of chromosome segment substitution lines harboring Oryza nivara genomic segments in Koshihikari and evaluation of yield-related traits. Reviewed
Furuta T., Uehara K., Shim R., Shim J., Nagai K., Ashikari M., Takashi T.
Breeding Science 2016.12
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Detection of Novel QTLs Regulating Grain Size in Extra-Large Grain Rice (Oryza sativa L.) Lines
Segami S., Yamamoto K., Oki K., Noda T., Kanamori H., Sasaki H., Mori S., Ashikari M., Kitano H., Katayose Y., Iwasaki Y., Miura K
Rice 2016.7
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Development of chromosome segment substitution lines (CSSLs) of Oryza longistaminata A. Chev. & Röhr in the background of the elite japonica rice cultivar, Taichung 65 and their evaluation for yield traits. Reviewed
Ramos J., Furuta T., Uehara K., Chihiro N., Shim R., Shim J, Brar D., Ashikari M. and Jena K.
Euphytica Vol. 200 page： 151–163 2016.7
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Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.
Kanako Bessho- Uehara, Diane R. Wang, Tomoyuki Furuta, Anzu Minami, Keisuke Nagai, Rico Gamuyao, Kenji Asano, Rosalyn B. Angeles-Shim, Yoshihiro Shimizu, Madoka Ayano, Norio Komeda, Kazuyuki Doi, Kotaro Miura, Yosuke Toda, Toshinori Kinoshita, Satohiro Okuda, Tetsuya Higashiyama, Mika Nomoto, Yasuomi Tada, Hidefumi Shinohara, Yoshikatsu Matsubayashi, Anthony Greenberg, Jianzhong Wu, Hideshi Yasui, Atsushi Yoshimura, Hitoshi Mori, Susan R. McCouch & Motoyuki Ashikari.
PNAS Vol. 113 ( 32 ) page： 8969–8974 2016.6
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Oryza sativa H+-ATPase (OSA) is Involved in the Regulation of Dumbbell-Shaped Guard Cells of Rice
Toda Y., Wang Y., Takahashi A., Kawai Y., Tada Y., Yamaji N., Ma J-F., Ashikari M. and Kinoshita Y.
Plant cell physiology Vol. 57 ( 6 ) page： 1220-1230 2016.6
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Two tightly linked genes at the hsa1 locus cause both F1 and F2 hybrid sterility in rice.
Kubo T., Takashi T., Ashikari M., Yoshimura A., Kurata N.
Mol Plant. Vol. 9 ( 2 ) page： 221-32 2016.2
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Construction of a versatile SNP array for pyramiding useful genes of rice.
Kurokawa Y., Noda T., Yamagata Y., Shim R. A., Sunohara H., Uehara K., Furuta T., Nagai K., Jena K. K., Yasui H., Yoshimura A., Ashikari M. and Doi K.
Plant Science Vol. 242 page： 131-139 2016.1
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Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima is Caused by Mutations in Different Loci Reviewed
Furuta T., Komeda N., Asano K., Uehara K., Gamuyao R., Shim R. A., Nagai K., Doi K. Wang D., Yasui H., Yoshimura A., Wu J., McCouch S. and Ashikari M.
Genes Genomes Genetics Vol. 5 ( 11 ) page： 2267-74 2015.9
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A Mathematical Model of Phloem Sucrose Transport as a New Tool for Designing Rice Panicle Structure for High Grain Yield Reviewed
Seki M., Feugier F. Song X-J.,Ashikari M.,Nakamura H.,Ishiyama K.,Yamaya T.,Inari-Ikeda M., Kitano H.and Satake A.
Plant cell physiology Vol. 56 page： 605-619 2014.11
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Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice. Reviewed
Song X-J., Kuroha T., Ayano M., Furuta T., Nagai K., Komeda N., Segami S., Miura K., Ogawa D., Kamura T., Suzuki T., Higashiyama T., Yamasaki M., Mori H., Inukai Y., Wu J., Kitano H., Sakakibara H., Jacobsen SE and Ashikari M
PNAS Vol. 112 ( 1 ) page： 76-81 2014.11
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QTL analysis of internode elongation in response to gibberellin in deepwater rice. Reviewed
Nagai K., Kondo Y., Kitaoka T., Noda T., Kuroha T., Shim R. A., Yasui H., Yoshimura A. and Ashikari M.
AOB plants Vol. 6 page： 1-12 2014.6
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Gibberellin biosynthesis and signal transduction is essential for internode elongation in deepwater rice. Reviewed
Ayano M, Kani T., Kojima M, Sakakibara H., Kitaoka T., Kuroha T., Shim R. A., Kitano H., Nagai K. and Ashikari M.
Plant, Cell and Environment Vol. 37 ( 10 ) page： 2313-2324 2014
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Development and evaluation of chromosome segment substitution lines (CSSLs) carrying chromosome segments derived from Oryza rufipogon in the genetic background of Oryza sativa L. Reviewed
Furuta T. , Uehara K. , Shim R. A., Shim J. H., Ashikari M. and Takashi T.
Breeding Science Vol. 63 ( 5 ) page： 468-475 2014
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OsLG1 regulates a closed panicle trait in domesticated rice Reviewed
Ishii, T., Numaguchi, K., Miura, K., Yoshida, K., Pham Thien Thanh, Than Myint Htun, Yamasaki, M., Komeda, N., Matsumoto, T., Terauchi, R., Ishikawa, R., Ashikari, M.
Nature genetics Vol. 45 ( 4 ) page： 462-465 2013.4
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Control of Tiller Growth of Rice by OsSPL14 and Strigolactones, Which Work in Two Independent Pathways Reviewed
Luo L, Li W, Miura K, Ashikari M, Kyozuka J.
Plant & Cell Physiology Vol. 53 ( 10 ) page： 1793-1801 2012.8
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Two novel QTLs regulate internode elongation in deepwater rice during the early vegetative stage. Reviewed
Nagai K., Kuroha T., Ayano M., Kurokawa Y., Shim, R. A., Angeles, Shim J., Yasui H, Yoshimura A. and Ashikari M.
Breeding Science Vol. 62 page： 178-185 2012.4
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A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes. Invited Reviewed
Shim, R. A., Asano K., Takashi T., Shim J.H., Kuroha T., Ayano M. and Ashikari M.
Rice Vol. 28 2012
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DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem. Invited Reviewed
Sato-Izawa K., Nakaba S., Tamura K., Yamagishi Y., Nakano Y., Nishikubo N., Kawai S., Kajita S., Ashikari M., Funada R., Katayama Y. and Kitano H.
Plant Cell Environ Vol. 35 ( 11 ) page： 2031 - 2044 2012
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Artificial selection for a green revolution gene during japonica rice domestication.
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M
PNAS Vol. 108 ( 27 ) page： 10931-10932 2011.5
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Rice growth adapting to deepwater
Hattori Y, Nagai K, Ashikari M.
Curr. Opin. Plant Biol. Vol. 14 page： 100-105 2011.2
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Vacuolar Proton Pumps and Aquaporins Involved in Rapid Internode Elongation of Deepwater Rice. Reviewed
Muto Y, Segami S, Hayashi H, Sakurai J, Murai-Hatano M, Hattori Y, Ashikari M and Maeshima M
Biosc. Biotechnol. Biochem. Vol. 75 ( 1 ) page： 114-122 2010.10
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*OsSPL14 promotes panicle branching and higher grain productivity in rice. Reviewed
Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M.
Vol. 42 ( 6 ) page： 545-549 2010.6
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Stunt or elongate? Two opposite strategies by which rice adapts to floods.
Nagai K, Hattori Y, Ashikari M.
J Plant Res. Vol. 123 ( 3 ) page： 303-9 2010.5
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SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice Reviewed
Asano, K., Miyao, A., Hirochika, H., Kitano, H., Matsuoka, M., Ashikari, M.
Proc. Jpn. Acad. Vol. 86 ( 3 ) page： 265-73 2010
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Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice Reviewed
Yamamoto, E., Takashi, T., Morinaka, Y., Lin, S,. Wu, J., Matsumoto, T., Kitano, H., Matsuoka, M., Ashikari, M.
Mol. Genet. Genomics Vol. 283 ( 4 ) page： 305-15 2010
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A mitochondrial gene in nuclear genome induces reproductive barrier in rice Reviewed
Yamagata, Y., Yamamoto, E., Aya, K., Win, KT., Doi, K., Sobrizal, S., Ito, M., Kanamori, H., Wu, J., Matsumoto, T., Matsuoka, M., Ashikari, M., Yoshimura, A
PNAS Vol. 107 ( 4 ) page： 1494-1499 2010
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Development and evaluation of Oryza glaberrima Steud. chromosome segment substitution lines (CSSLs) in the background of O. sativa L. cv. Koshihikari
Shim, R. A. , Angeles, E. R., Ashikari, M. and Takashi, T.
Breeding Science Vol. 60 ( 5 ) page： 613-619 2010
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*The ethylene response factors Snorkel1 and Snorkel2 allow rice to adapt to deepwater Reviewed
Hattori, Y., Nagai, K., Furukawa, F., Song X.-J., Kawano, R., Sakakibara, H., Wu, J., Matsumoto, T., Yoshimura, A., Kitano, H., Matsuoka, M., Mori, H. and *Ashikari, M.
Nature Vol. 460 page： 1026-1030 2009.8
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*A metastable DWARF1 epigenetic mutant affecting plant stature in rice Reviewed
Vol. 106 page： 11218-11223 2009.7
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Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa Reviewed
Kojima, M., Kamada-Nobusada, T., Komatsu, H., Takei, K., Kuroha, T., Mizutani, M., Ashikari, M., Ueguchi-Tanaka, M., Matsuoka, M., Suzuki K, Sakakibara H.
Plant Cell Physiol Vol. 50 ( 7 ) page： 1201-1214 2009
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Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice Reviewed
Asano, K. **, Hirano, K., Ueguchi-Tanaka, M., Angeles-Shim, R. B., Komura, T., Satoh, H., Kitano, H., Matsuoka, M. and Ashikari, M.
Mol. Genet. Genomics Vol. 281 ( 2 ) page： 223-231 2009
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High-resolution mapping revealed a 1.3-Mbp genomic inversion in Ssi1, a dominant semidwarf gene in rice (Oryza sativa L.) Reviewed
Miura, K., Wu, J., Sunohara, H., Wu, X., Matsumoto, T., Matsuoka, M., Ashikari, M. and Kitano, H.
Plant Breeding Vol. 128 ( 1 ) page： 63-69 2009
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A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos Reviewed
Sazuka, T., Kamiya, N. , Nishimura, T. , Ohmae, K., Sato, Y., Imamura, K., Nagato, Y.,Koshiba, T., Nagamura, Y., Ashikari, M., Kitano, H., Matsuoka, M
Vol. 60 ( 2 ) page： 227-241 2009
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The hybrid breakdown 1 (t) locus induces interspecific hybrid breakdown between rice Oryza sativa cv. Koshihikari and its wild relative O. nivara. Reviewed
Miura, K., Yamamoto, E., Morinaka, Y., Takashi, T., Kitano, H., Matsuoka, M. and Ashikari, M.
Breeding Science Vol. 58 ( 2 ) page： 99-105 2008
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Mapping of three QTLs that regulate internode elongation in deepwater rice. Reviewed
Hattori, Y., Nagai, K., Mori, H., Kitano, H., Matsuoka, M. and Ashikari, M.
Breeding Science Vol. 58 ( 1 ) page： 39-46 2008
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Genetic and molecular analysis of utility of sd1 alleles in rice breeding. Reviewed
Asano, K., Takashi, T., Miura, K., Qian, Q., Kitano, H., Matsuoka, M. and Ashikari, M.
Breeding Science Vol. 57 ( 1 ) page： 53-58 2007
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The small interfering RNA production pathway is required for shoot meristem initiation in rice. Reviewed
Nagasaki, H., Itoh, J., Hayashi, K., Hibara, K., Satoh-Nagasawa, N., Nosaka, M., Mukouhata, M., Ashikari, M., Kitano, H., Matsuoka, M., Nagato, Y. and Sato, Y.
PNAS Vol. 104 ( 37 ) page： 14867-14871 2007
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A Major QTL Confers Rapid Internode Elongation in Response to Water Rise in Deepwater Rice. Reviewed
Hattori, Y., Miura, K., Asano, K., Yamamoto, E., Mori, H., Kitano, H., Matsuoka, M. and Ashikari, M.
Breeding Science Vol. 57 ( 4 ) page： 305-314 2007
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Gibberellin regulates pollen viability and pollen tube growth in rice. Reviewed
Tory, C., Aya, K., Asano, K., Yamamoto, E., Morinaka, Y., Watanabe, M., Kitano, H., Ashikari, M., Matsuoka, M. and Ueguchi-Tanaka, M.
Plant Cell Vol. 19 ( 12 ) page： 3876-3888 2007
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The GID1-Mediated Gibberellin Perception Mechanism Is Conserved in the Lycophyte Selaginella moellendorffii but Not in the Bryophyte Physcomitrella patens. Reviewed
Hirano, K., Nakajima, M., Asano, K., Nishiyama, T., Sakakibara, H., Kojima, M., Katoh, E., Xiang, H., Tanahashi, T., Hasebe, M., Banks, JA., Ashikari, M., Kitano, H., Ueguchi-Tanaka, M. and Matsuoka, M.
Plant Cell Vol. 19 ( 10 ) page： 3058-3079 2007
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Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin. Reviewed
Ueguchi-Tanaka, M., Nakajima, M., Katoh, E., Ohmiya, H., Asano, K., Saji, S., Hongyu, X., Ashikari, M., Kitano, H., Yamaguchi, I. and Matsuoka, M.
Plant Cell Vol. 19 ( 7 ) page： 2140-2155 2007
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A quantitative trait locus regulating rice grain width.
Matsuoka, M. and Ashikari, M.
Nature Genet Vol. 39 ( 5 ) page： 583-584 2007
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Application of Functional Genomics Tools for Crop Improvement.
Ashikari, M., Matsuoka, M. and Masahiro Y.
Rice Functional Genomics: Challenges, Progress and Prospects page： 411-423 2007
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Gibberellin receptor and its role in gibberellin signaling in plants.
Ueguchi-Tanaka, M., Nakajima, M., Ashikari, M. and Matsuoka, M.
Annu. Rev. Plant Biol. Vol. 58 page： 183-198 2007
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Interaction of two recessive genes, hbd2 and hbd3, induces hybrid breakdown in rice. Reviewed
Yamamoto, E., Takashi, T., Morinaka, Y., Lin, S., Kitano, H., Matsuoka, M. and Ashikari, M.
Theoretical and applied genetics Vol. 115 ( 2 ) page： 187-194 2007
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Morphological Alteration Caused by Brassinosteroid Insensitivity Increases the Biomass and Grain Production of Rice. Reviewed
Morinaka, Y., Sakamoto, T., Inukai, Y., Agetsuma, M., Kitano, H., Ashikari, M. and Matsuoka, M.
Plant Physiol. Vol. 141 ( 3 ) page： 924-931 2006
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Identification, isolation and pyramiding of quantitative trait loci for rice breeding.
Ashikari, M. and Matsuoka, M.
TRENDS in Plant Sci. Vol. 11 ( 7 ) page： 344-350 2006
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Effects of Ssi1 gene controlling dm-type internode elongation pattern on lodging resistance and panicle characters in rice. Reviewed
Sunohara, H., Miura, K., Wu, X., Saeda, T., Mizuno, S., Ashikari, M., Matsuoka, M. and Kitano, H.
Breeding Science Vol. 56 ( 3 ) page： 261-268 2006
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The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis. Reviewed
Shimada, A., Ueguchi-Tanaka, M., Sakamoto, T., Fujioka, S., Takatsuto, S., Yoshida, S., Sazuka, T., Ashikari, M. and Matsuoka, M.
Plant J. Vol. 48 ( 3 ) page： 390-402 2006
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Expression of the Vacuolar Ca2+/H+ Exchanger, OsCAX1a, in Rice: Cell and Age Specificity of Expression, and Enhancement by Ca2+. Reviewed
Kamiya, T., Akahori, T., Ashikari, M. and Maeshima, M.
Plant Cell Physiol. Vol. 47 ( 1 ) page： 96-106 2006
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GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers. Reviewed
Tsuji, H., Aya, K., Ueguchi-Tanaka, M., Shimada, Y., Nakazono, M., Watanabe, R., Nishizawa, N-K., Gomi, K., Shimada, A., Kitano, H., Ashikari, M. and Matsuoka, M.
Plant J. Vol. 47 ( 3 ) page： 427-444 2006
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Morphological Alteration Caused by Brassinosteroid Insensitivity Increases the Biomass and Grain Production of Rice. Invited Reviewed
Morinaka Y., Sakamoto T., Inukai Y., Agetsuma M., Kitano H., Ashikari M. and Matsuoka M.
Plant Physiol Vol. 141 ( 3 ) page： 924 - 931 2006
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Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice. Reviewed
Itoh, H., Shimada, A., Ueguchi-Tanaka, M., Kamiya, N., Hasegawa, Y., Ashikari, M. and Matsuoka, M.
Plant J. Vol. 44 page： 669-679 2005
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A Novel Cytochrome P450 Is Implicated in Brassinosteroid Biosynthesis via the Characterization of a Rice Dwarf Mutant, dwarf11, with Reduced Seed Length. Reviewed
Tanabe, S., Ashikari, M., Fujioka, S., Takatsuto, S., Yoshida, S., Yano, M., Yoshimura, A., Kitano, H., Matsuoka, M., Fujisawa, Y., Kato, H. and Iwasaki, Y.
Plant Cell Vol. 17 page： 776-790 2005
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Circadian-Associated Rice Pseudo Response Regulators (OsPRRs) : Insight into the Control of Flowering Time. Reviewed
Murakami, M., Matsushita, A., Ashikari, M., Yamashino, T. and Mizuno, T.
Biosci. Biotechnol. Biochem. Vol. 69 page： 410-414 2005
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Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling. Reviewed
Inukai, Y., Sakamoto,T., Ueguchi-Tanaka, M., Shibata, Y., Gomi, K., Umemura, I., Hasegawa, Y., Ashikari, M., Kitano, H. and Matsuoka, M.
Plant Cell Vol. 17 page： 1387-1396 2005
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*Cytokinin oxidase regulates rice grain production. Reviewed
Ashikari, M., Sakakibara, H., Lin, S., Yamamoto, T., Takashi, T., Nishimura, A., Angeles, R. E., Qian, Q., Kitano, H. and Matsuoka, M.
Science Vol. 309 page： 741-745 2005
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The rice brassinosteroid-deficient dwarf2 mutant (brd2), defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1 , is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone. Reviewed
Hong, Z., Ueguchi-Tanaka, M., Fujioka, S., Takatsuto, S., Yoshida, S., Hasegawa, Y., Ashikari, M., Kitano, K. and Matsuoka, M.
Plant Cell Vol. 17 page： 2243-2254 2005
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*GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin. Reviewed
Ueguchi-Tanaka M., Ashikari, M., Nakajima, M., Itoh H., Katoh E., Kobayashi M., Chow, T.-Y., Hsing, Y. C., Kitano, H., Yamaguchi, I. and Matsuoka, M.
Nature Vol. 437 page： 693-698 2005
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Isolation of a rice regeneration QTL gene and its application to new transformation system. Reviewed
Nishimura, A., Ashikari, M., Lin, S., Takashi, T., Angeles, E.R., Yamamoto,T. and Makoto Matsuoka, M.
PNAS Vol. 102 page： 11940-11944 2005
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Dissection of the Phosphorylation of Rice DELLA Protein, SLENDER RICE1. Reviewed
Itoh H, Sasaki A, Ueguchi-Tanaka M, Ishiyama K, Kobayashi M, Hasegawa Y, Minami E, Ashikari M, Matsuoka M.
Plant Cell Physiol. Vol. 46 page： 1392-1399 2005
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Analysis of the rice mutant dwarf and gladius leaf 1: aberrant katanin-mediated microtubule organization causes upregulation of gibberellin biosynthetic genes independently of gibberellin signaling. Reviewed
Komorisono, M., Ueguchi-Tanaka, M., Aichi, I., Hasegawa, Y., Ashikari, M., Kitano, H., Matsuoka, M. and Sazuka T.
Plant Physiol. Vol. 138 page： 1982-1993 2005
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QTL Detection and Application to Plant Breeding.
Ashikari, M. and Matsuoka, M.
ISB News Report, Information systems for Biotecnology page： 7-9 2005
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Dissection of the Phosphorylation of Rice DELLA Protein, SLENDER RICE1. Invited Reviewed
Itoh H., Sasaki A., Ueguchi-Tanaka M., Ishiyama K., Kobayashi M., Hasegawa Y., Minami E., Ashikari M. and Matsuoka, M.
Plant Cell Physiol Vol. 46 ( 8 ) page： 1392 - 1399 2005
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Mapping of the Temperature sensitivE gene, TS. Invited Reviewed
Hattori Y., Kaneko M., Ashikari M., Matsuoka M. and Hattori K.
Rice Genet Newslet 22,64-66. (2005) Vol. 22 page： 64 - 66 2005
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Detection QTLs for deepwater rice ability. Invited Reviewed
Hattori Y., Ashikari M., Kitano H. and Matsuoka M.
Rice Genet Newslet Vol. 22 page： 67 - 68 2005
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An overview of gibberellin metabolism enzyme genes and their related mutants in rice. Reviewed
Sakamoto, T., Miura, K., Itoh, H., Tatsumi, T., Ueguchi-Tanaka, M., Ishiyama, K., Kobayashi, M., Agrawal, G. K., Takeda, S., Abe, K., Miyao, A., Hirochika, H., Kitano, H., Ashikari, M. and Matsuoka, M.
Plant Physiol. Vol. 134 page： 1642-1653 2004
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A rice semi-dwarf gene, Tan-Ginbozu(D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase. Reviewed
Itoh, H., Tatsumi, T., Sakamoto, T., Otomo, K., Toyomasu, T., Kitano, H., Ashikari, M., Ichihara, S. and Matsuoka, M.
Plant Mol. Biol. Vol. 54 page： 533-547 2004
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The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1. Reviewed
Suzaki, T., Sato, M., Ashikari, M., Miyoshi, M., Nagato, Y. and Hirano, H.
Research article. Vol. 131 page： 5649-5657 2004
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Loss-of-function mutations of the rice GAMYB gene impair the α-amylase expression in aleurone and flower development. Reviewed
Kaneko, M., Inukai, Y., Ueguchi-Tanaka, M., Itoh, H., Izawa, T., Kobayashi, Y., Hattori, T., Miyao, A., Hirochika, H., Ashikari, M., Matsuoka, M.
Plant Cell Vol. 16 page： 33-44 2004
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GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin dependent degradation of SLR1 in rice. Reviewed
Gomi, K., Sasaki, A., Itoh, H., Ueguchi-Tanaka, M., Ashikari, M., Kitano, H. and Matsuoka, M.
Plant J. Vol. 37 page： 626-634 2004
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Map-based cloning of the Hd1 gene controlling photoperiod sensitivity in rice. Invited Reviewed
Ashikari, M., Katayose, Y., Yamanouchi, U., Monna, L., Fuse, T., Sasaki, T. and Yano, M.
2004
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*Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant. Reviewed
Sasaki, A., Itoh, H., Gomi, K., Ueguchi-Tanaka, M., Ishiyama, K., Kobayashi, M., Jeong, D.H., An, G., Kitano, H., Ashikari, M. and Matsuoka, M.
Science Vol. 299 page： 1896-1898 2003
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Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants? Reviewed
Kaneko, M., Itoh, H., Inukai, Y., Sakamoto, T., Ueguchi-Tanaka, M., Ashikari, M. and Matsuoka, M.
Plant J. Vol. 35 page： 104-115 2003
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A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss-of-function of a new member of cytochrome P450. Reviewed
Hong, Z., Ueguchi-Tanaka, M., Umemura, K., Uozu, S., Fujioka, S., Takatsuoto, S., Yoshida, S., Ashikari, M., Kitano, H. and Matsuoka, M.
Plant Cell Vol. 15 page： 2900-2910 2003
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Mapping of the lazy gene, la. Invited Reviewed
Miura K., Ashikari M., Matsuoka M. and Hsing Y. I. C.
Rice Genet Newslet Vol. 20 ( 29 ) page： 30 2003
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The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Invited Reviewed
Murakami M., Ashikari M., Miura K., Yamashino T. and Mizuno T.
Plant Cell Physiol Vol. 44 ( 11 ) page： 1229 - 1236 2003
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A rice spotted leaf gene, spl7, encodes a heat stress transcriptional factor protein. Reviewed
Yamanouchi, U., Yano, M., Lin, H., Ashikari, M. and Yamada, K.
PNAS Vol. 99 page： 7530-7535 2002
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The gibberellin signaling pathway is regulated by appearance and disappearance of SLENDER RICE 1 in nuclei. Reviewed
Itoh, H., Ueguxhi-Tanaka, M., Sato, Y., Ashikari, M.and Matsuoka, M.
Plant Cell Vol. 14 page： 57-70 2002
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*Rice gibberellin synthesis gene Reviewed
Sasaki, A., Ashikari, M., Ueguchi-Tanaka, M., Itoh, H., Nishimura, A., Datta, S., Ishiyama, K., Saito, T., Kobayashi, M., G. S. Khush, Kitano, H. and Matsuoka, M.
Nature Vol. 416 page： 701-702 2002
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Isolation and characterization of a cDNA encoding an orthologue of ROUGH SHEATH2 (OsRS2) from rice. Invited Reviewed
Sato Y., Nishimura A., Sakamoto T., Ashikari M. and Matsuoka M.
Plant Biotech Vol. 19 ( 1 ) page： 11 - 18 2002
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Mapping and expression of rice GAMYB. Invited Reviewed
Kaneko M., Ashikari M. and Matsuoka M.
Rice Genet Newslet Vol. 19 page： 60 - 62 2002
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High resolution map of Dwarf 50 (D50) in rice. Invited Reviewed
Sato K., Ashikari M., Tamura K., Mase K., Kitano H., Matsuoka M and Katayama Y.
Rice Genet Newslet Vol. 19 page： 31 - 33 2002
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Mapping of the CROWN ROOTLESS1 gene, CRL1, by CAPS analysis. Invited Reviewed
Inukai Y, Shibata Y., Kitano H., Ashikari M. and Matsuoka M.
Rice Genet Newslet Vol. 19 ( 29 ) page： 31 2002
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Modification of Rice Plant Height by Suppressing the Height-Controlling Gene, D18, in Rice. Invited Reviewed
Itoh H., Ueguchi-Tanaka M., Sakamoto T., Kayano T., Tanaka H., Ashikari M. and Matsuoka M.
Breeding Science Vol. 52 ( 3 ) page： 215 - 218 2002
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Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem. Invited Reviewed
Hong Z., Ueguchi-Tanaka M., Shimizu-Sato S., Inukai Y., Fujioka S., Shimada Y., Takatsuto S., Agetsuma M., Yoshida S., Watanabe Y., Uozu S., Kitano H., Ashikari M. and Matsuoka M.
Plant J Vol. 32 ( 4 ) page： 495 - 508 2002
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Loss-of-function of a rice gibberellin biosynthetic gene, GA20 oxidase(GA20ox-2), led to the rice ‘Green Revolution’. Invited Reviewed
Breeding Science Vol. 52 ( 2 ) page： 143 - 150 2002
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Identification and characterization of a quantitative trait locus, Hd9, controlling heading date in rice. Invited Reviewed
Lin H.X., Ashikari M., Yamanouchi U., Sasaki T. and Yano M.
Breeding Science Vol. 52 ( 1 ) page： 35 - 41 2002
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The α-Amylase induction in endosperm during rice seed germination is caused by gibberellin synthesized in epithelium. Invited Reviewed
Kaneko M., Itoh H., Ueguchi-Tanaka M., Ashikari M. and Matsuoka M.
Plant Physiol Vol. 128 ( 4 ) page： 1264 - 1270 2002
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Auxin response factor family in rice. Invited Reviewed
Sato Y., Nishimura A., Ito M., Ashikari M., Hirano H-Y. and Matsuoka M.
Genes Genet Syst Vol. 76 ( 6 ) page： 373 - 380 2001
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Mapping of ORGANLESS1 gene, ORL1. Invited Reviewed
Kamiya N., Ashikari M., Sato Y., Nagato Y., Kitano H. and Matsuoka M.
Rice Genet Newslet Vol. 18 page： 33 - 34 2001
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Mapping of ABERRANT REGIONALIZATION OF EMBRYO 1 gene, ARE1, by CAPS analysis. Invited Reviewed
Ito M., Sato Y., Kitano H., Nagato Y., Ashikari M. and Matsuoka M.
Rice Genet Newslet Vol. 18 page： 31 - 32 2001
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Mapping of MORI1 gene. Invited Reviewed
Nishimura A., Sato Y., Kitano H., Nagato Y., Ashikari M. and Matsuoka M.
Rice Genet Newslet Vol. 18 ( 30 ) page： 31 2001
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A High resolution mapping of SHOOT ORGANIZATION 2 gene，SHO2. Invited Reviewed
Mukohhata M., Ashikari M., Kitano H., Nagato Y. and Matsuoka M.
Rice Genet Newslet Vol. 18 page： 17 - 19 2001
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Loss of function of a rice BRASSINOSTEROID INSENSITIVE 1 homolog prevents internode elongation and bending of the lamina joint. Reviewed
Yamamuro, C., Ihara, Y., Wu, X., Noguchi, T., Fujioka, S., Takatsuto, S., Ashikari, M., Kitano, H. and Matsuoka, M.
Plant Cell Vol. 12 page： 1591-1605 2000
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Rice dwarf mutant, d1, which is defective in the subunit of the heterotrimeric G protein affects gibberellin signal transduction. Reviewed
Tanaka-Ueguchi, M., Fujisawa, Y., Kobayashi, M., Ashikari, M., Iwasaki, Y., Kitano, H. and Matsuoka, M.
Proc. Natl. Acad. Sci. USA Vol. 97 page： 11638-11643 2000
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Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS. Reviewed
Yano, M., Katayose, Y., Ashikari, M., Yamanouchi, U., Monna, L., Fuse, T., Baba, T., Yamamoto, K., Umehara, U., Nagamura, Y. and Sasaki, T.
Plant Cell Vol. 12 page： 2473-2483 2000
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High resolution map of dwarf mutant gene, dwarf11 of rice. Invited Reviewed
Tanabe S. B., Ashikari M., Yano M., Yoshimura A., Matsuoka M., Kitano H., Asahi T. and Iwasaki Y.
Rice Genet Newslet Vol. 15 page： 18 - 19 2000
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High resolution mapping of a rice gene affecting shoot organization, SHO1. Invited Reviewed
Mukohhata M., Ashikari M., Miwa M., Sasaki T., Nagato Y., Kitano H. and Matsuoka M.
Rice Genet Newslet Vol. 17 page： 24 - 26 2000
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Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the alpha-subunit of GTP-binding protein. Reviewed
Ashikari, M., Wu, J., Yano, M., Sasaki, T. and Yoshimura, A.
Proc. Natl. Acad. Sci. USA Vol. 96 page： 10284-10289 1999
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Genetic analysis of a d1 chimeric rice plant. Invited Reviewed
Ashikari M., Ideta O., Yoshimura A. and Iwata N.
International Rice Research Notes (IRRN) Vol. 22 page： 12 - 13 1997
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Increased frequency of chimeric plants in progenies of dwarf chimeric rice plant treated with 5-azacytidine. Invited Reviewed
Ashikari M., Ideta O., Yoshimura A. and Iwata N.
Rice Genet Newslet Vol. 14 page： 55 - 56 1997
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Fine map of d-1 gene in rice. Invited Reviewed
Ashikari M., Ideta O., Yoshimura A. and Iwata, N.
Rice Genet Newslet Vol. 13 page： 76 - 77 1996
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Integration of conventional and RFLP linkage map in rice, III. Chromosome 5, 7, 8 and 12. Invited Reviewed
Ideta O., Yoshimura A., Ashikari M. and Iwata N.
Rice Genet Newslet Vol. 11 page： 116 - 117 1994