Updated on 2024/03/28

写真a

 
YASUDA, Koji
 
Organization
Institute of Materials and Systems for Sustainability Division of Materials Research (DM) Associate professor
Graduate School
Graduate School of Information Science
Graduate School of Informatics
Title
Associate professor
Contact information
メールアドレス

Degree 1

  1. 博士(工学) （ 1997.3   京都大学 ） 

To the head of Degree.▲

Research Interests 1

  1. quantum chemistry, many-body theory, density functional theory, reduced density matrices, parallel processing, cheminformatics

To the head of Research Interests.▲

Research Areas 4

  1. Others / Others  / Physical Chemistry

  2. Informatics / Intelligent informatics  / cheminformatics

  3. Others / Others  / Software

  4. Others / Others  / Mathematical Physics/Fundamental Theory of Physical Properties

To the head of Research Areas.▲

Current Research Project and SDGs 4

  1. 化学情報学による物質設計

  2. 表面励起状態の理論化学

  3. グラフィックボードを用いた科学技術計算の加速

  4. Direct determination of the denoity matrix

To the head of Current Research Project and SDGs.▲

Education 2

  1. Kyoto University   Graduate School, Division of Engineering

    - 1997

    　 More details

    Country： Japan

  2. Kyoto University   Faculty of Engineering

    - 1992

    　 More details

    Country： Japan

To the head of Education.▲

Professional Memberships 2

  1. 日本物理学会

  2. 日本コンピュータ化学会

    2020.4

To the head of Professional Memberships.▲
 

Papers 28

  1. Learning organo-transition metal catalyzed reactions by graph neural networks

    Sakai, M; Kaneshige, M; Yasuda, K

    JOURNAL OF COMPUTATIONAL CHEMISTRY   Vol. 45 ( 6 ) page： 341 - 351   2024.3

    　More details

  2. Molecules with a TEMPO-based head group as high-performance organic friction modifiers

    Hou Jinchi, Tsukamoto Masaki, Hor Seanghai, Chen Xingyu, Yang Juntao, Zhang Hedong, Koga Nobuaki, Yasuda Koji, Fukuzawa Kenji, Itoh Shintaro, Azuma Naoki

    FRICTION   Vol. 11 ( 2 ) page： 316 - 332   2023.2

    　More details

    Language：Japanese  

    DOI： 10.1007/s40544-022-0610-0

    Web of Science

  3. Adsorption Behavior of TEMPO-Based Organic Friction Modifiers during Sliding between Iron Oxide Surfaces: A Molecular Dynamics Study

    Chen Xingyu, Yang Juntao, Yasuda Koji, Koga Nobuaki, Zhang Hedong

    LANGMUIR   Vol. 38 ( 10 ) page： 3170 - 3179   2022.3

    　More details

  4. グラフニューラルネットワークによる有機遷移金属反応の学習 Invited Reviewed

    酒井基至, 金重光典, 安田耕二

    Journal of Computer Chemistry, Japan   Vol. 21 ( 4 ) page： 126 - 128   2022

    　More details

    Authorship：Corresponding author  

  5. 特徴ベクトルから分子構造を生成するアルゴリズム Invited Reviewed

    陸明浩, 安田耕二

      Vol. 17 ( 5 ) page： 228-231   2019.3

    　More details

    Authorship：Lead author   Language：Japanese   Publishing type：Research paper (scientific journal)  

    DOI： 10.2477/jccj.2018-0056

  6. Resonance State Method for Electron Injection in Dye Sensitized Solar Cells

    Sulzer David, Yasuda Koji

    JOURNAL OF CHEMICAL THEORY AND COMPUTATION   Vol. 14 ( 10 ) page： 5090-5104   2018.10

    　More details

    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1021/acs.jctc.8b00364

    Web of Science

  7. A New Method To Evaluate Excited States Lifetimes Based on Green's Function: Application to Dye-Sensitized Solar Cells Reviewed

    David Sulzer, Satoru Iuchi, Koji Yasuda

    J. Chem. Theory Comput.   Vol. 12   page： 3074−3086   2016

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1021/acs.jctc.6b00181

  8. 1. Improving DIIS convergence for metallic systems using Gaussian basis set Reviewed

    David Sulzer, Satoru Iuchi, Koji Yasuda

    Chemical Physics Letters   Vol. 635 ( 16 ) page： 201-204   2015

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  9. Efficient calculation of two-electron integrals for high angular basis functions Reviewed

    Koji Yasuda, Hironori Maruoka

    International Journal of Quantum Chemistry     2013.12

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

    The computation of electron repulsion integrals (ERIs) is the most time-consuming process in the density functional calculation using Gaussian basis set. Many temporal ERIs are calculated, and most are stored on slower storage, such as cache or memory, because of the shortage of registers, which are the fastest storage in a CPU. Moreover, the heavy register usage makes it difficult to launch many concurrent threads on a graphics processing unit (GPU) to hide latency.
    Hence we propose to optimize the calculation order of one-center ERIs to minimize the number of registers used, and to calculate each ERI with three or six cooperating threads. The performance of this method is measured on a recent CPU and a GPU. The proposed approach is found to be efficient for high angular basis functions with a GPU. When combined with a recent GPU, it accelerates the computation almost 4-fold.

    DOI： 10.1002/qua.24607

  10. Acceleration of computatuonal quantum chemistry by Heterogeneous computer architectures Reviewed

    Y. Furukawa, R. Koga, K. Yasuda

    Proceeding of International Conference on Modeling and Simulation Technology     page： 1   2011.10

    　More details

    Language：English  

  11. *グラフィックボードで計算物理を Invited Reviewed

    安田　耕二

    日本物理学会誌   Vol. 64 ( 8 ) page： 637-639   2009

    　More details

    Authorship：Lead author   Language：Japanese  

  12. *Size extensivity of the variational reduced-density-matrix method Reviewed

    Maho Nakata, Koji Yasuda

    Physical Review A   Vol. 80 ( 4 ) page： 042109   2009

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

    With the density-matrix variational method, the ground-state energy of a many-electron system is calculated by minimizing the energy expectation value subject to the selected representability conditions for the second-order reduced-density matrix (2-RDM). There is a lack of size extensivity under the P, Q, and G conditions of this method by applying to M noninteracting atoms and molecules up to M=32; BeM, (CH4)M, and (N2)M. The energy per molecule (E/M) monotonically decreases as M increases, showing the lack of size extensivity in this method. The inextensive contributions to energies are 3×10-4 and 3×10-3 a.u. for (CH4)M and (N2)M using the STO-6G basis set, respectively. In the examples studied, E/M approaches a finite value as M-->[infinity]. The intermolecular elements of 2-RDMs do not satisfy the cumulant expansion.

  13. Comment on "Family of modified contracted Schroedinger equations" Reviewed

    Koji Yasuda

    Physical Review A   Vol. 79 ( 1 ) page： 016101   2009

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  14. Two-Electron Integral Evaluation on the Graphics Processor Unit Reviewed

    Koji Yasuda

    Journal of Computational Chemistry   Vol. 29 ( 3 ) page： 334-342   2008.2

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  15. *Accelerating Density Functional Calculations with Graphics Processing Unit Reviewed

    Koji Yasuda

    Journal of Chemical Theory and Computation   Vol. 4 ( 8 ) page： 1230-1236   2008

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  16. *The extension of the fragment molecular orbital method with the many-particle Green's function Reviewed

    Koji Yasuda, Daisuke Yamaki

    The Journal of Chemical Physics   Vol. 125   page： 154101   2006.10

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

    By using the many-particle Green's function (GF) the extension of the fragment molecular orbital (FMO) method by Kitaura et al. [Chem. Phys. Lett. 313, 701 (1999)] is proposed. It is shown that the partial summation of the cluster expansion of GF reproduces the same extrapolation formula as that of FMO. Therefore we can determine the excitation energy, the transition moment, and the linear response of a molecule from GF approximated with the FMO procedure. It is also shown that no wave function exists which is consistent to the FMO results. The perturbation expansion in which the self-consistent charge approximation defines the unperturbed state is reported. By using it the three-body effects missing in the pair approximation of FMO are analyzed and the corrections to the energy and the reduced density matrices are proposed. In contrast to the previous works these new corrections are not expressed as the addition or the subtraction of the energies of fragments. They are size extensive and require only the quantities available by the FMO calculation.

  17. Determination of the Hubbard model parameters by using the unrestricted Hartree-Fock solutions, and improvement of their energies Reviewed

    Daisuke Yamaki, Koji Yasuda, Kizashi Yamaguchi

    International Journal of Quantum Chemistry   Vol. 103 ( 1 ) page： 73-81   2005

    　More details

    Language：English   Publishing type：Research paper (scientific journal)  

  18. Simple minimum principle to derive a quantum-mechanical/ molecular-mechanical method Reviewed

    Koji Yasuda, Daisuke Yamaki

    Journal of Chemical Physics   Vol. 121   page： 3964   2004

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  19. Uniqueness of the solution of the contracted Schrödinger equation. Reviewed

    Koji Yasuda

    Physical Review A   Vol. 65   page： 052121   2002

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  20. *Local approximation of the correlation energy functional in the density matrix functional theory Reviewed

    Koji Yasuda

    Physical Review Letters   Vol. 88 ( 5 ) page： 053001   2002

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  21. Correlation energy functional in the density matrix functional theory Reviewed

    Koji Yasuda

    Physical Review A   Vol. 63   page： 032517   2001

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  22. Direct determination of second-order density matrix using density equation : Open-shell system and excited state Reviewed

    Nakata M, Ehara M, Yasuda K and Nakatsuji H

    Journal of Chemical Physics   Vol. 112 ( 20 ) page： 8772-8778   2000

    　More details

    Language：English   Publishing type：Research paper (scientific journal)  

  23. Direct determination of the guantum-mechanical density matrix : Parquet theory Reviewed

    Physical Review A   Vol. 59 ( 6 ) page： 4133   1999

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  24. Direct determination of density matrix using density equation : potential energy curres of small molecules, HF, CH4, BH3, NH3, and H2O Reviewed

    Ehara M, Nakata M, Kou H, Yasuda K and Nakatsuji H

    Chemical Physics Letters   Vol. 305 ( 5-6 ) page： 483-488   1999

    　More details

    Language：English   Publishing type：Research paper (scientific journal)  

  25. Direct determination of the quantum-mechanical density matrix using the density equation II. (共著) Reviewed

    Physical Review A   Vol. 56 ( 4 ) page： 2648   1997

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  26. Direct determination of the quantum-mechanical denoity Matrix using the density equation(共著) Reviewed

    Physical Review Letters   Vol. 76   page： 1039   1996

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  27. Theoretical Study of the Vacuum-Ultraviolet Spectra of SnH4 and Sn(CH3)4(共著) Reviewed

    The Journal of Physical Chemiotry   Vol. 99   page： 12501   1995

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

  28. Theoretical Study of the Visible and Ultraviolet Spectra of Chromyl Chloride(CrO2Cl2)(共著) Reviewed

    The Journal of Chemical Physics   Vol. 99   page： 1945   1993

    　More details

    Authorship：Lead author   Language：English   Publishing type：Research paper (scientific journal)  

▼display all

To the head of Papers.▲

Books 1

  1. 分子システムの計算科学

    安田耕二, 天能精一郎, 他（ Role： Joint author）

    共立出版  2010.11 

    　More details

    Language：Japanese

To the head of Books.▲

Presentations 36

  1. Learning Organo-Transition Metal Catalyzed Reactions by Graph Neural Networks International conference

    Motoji Sakai, Su Dehong, Koji Yasuda

    ICMaSS2023  2023.12.2 

    　More details

    Event date： 2023.12

    Language：English   Presentation type：Poster presentation  

    Venue：Nagoya  

  2. グラフニューラルネットワークによる有機遷移金属反応の学習と深層強化学習の活用

    蘇徳紅, 酒井基至, 安田耕二

    日本コンピュータ化学会2023年秋季年会  2023.11.25 

    　More details

    Event date： 2023.11

    Language：Japanese   Presentation type：Poster presentation  

    Venue：高松  

  3. Learning Organo-Transition Metal Catalyzed Reactions by Graph Neural Networks International conference

    Motoji Sakai, Su Dehong, Koji Yasuda

    TACC2023, Sapporo  2023.9.4 

    　More details

    Event date： 2023.9

    Language：English   Presentation type：Poster presentation  

  4. グラフニューラルネットワークを活用した有機遷移金属触媒反応の学習

    酒井基至, 金重光典, 安田耕二

    日本コンピュータ化学会2022秋季年会  2022.11.26 

    　More details

    Event date： 2022.11

    Language：Japanese   Presentation type：Poster presentation  

    Venue：長野  

  5. Learning Organo-Transition Metal Catalysis Using Graph Neural Networks International conference

    Motoji Sakai, Mitsunori Kaneshige, Koji Yasuda

    ICMaSS 2021  2021.11.5  Organizing committee of ICMaSS2021

    　More details

    Event date： 2021.11

    Language：English   Presentation type：Poster presentation  

    Venue：Nagoya University (Online)  

  6. グラフニューラルネットワークを活用した有機遷移金属触媒反応の学習

    酒井基至，金重光典，安田耕二

    第15回分子科学討論会  2021.9.21  分子科学会

    　More details

    Event date： 2021.9

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：北海道大学（オンライン）  

  7. 特徴ベクトルから分子構造を生成するアルゴリズム

    陸明浩, 安田耕二

    日本コンピュータ化学会2018秋季年会  

    　More details

    Event date： 2018.11

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：弘前大学   Country：Japan  

  8. Green関数を用いた表面励起状態の計算法

    Sulzer David, 井内哲, 安田耕二

    分子科学討論会2016 

    　More details

    Event date： 2016.9

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：神戸ファッションマート   Country：Japan  

  9. Theoretical Analysis of the Electron Injection Rate in the Dye-Sensitized Solar Cells International conference

    David Sulzer, Satoru Iuchi, Koji Yasuda

    International Symposium on EcoTopia Science 2015 (2015). 

    　More details

    Event date： 2015.11

    Language：English   Presentation type：Poster presentation  

    Country：Japan  

  10. Theoretical Analysis of the Electron Injection Rate in the Dye-Sensitized Solar Cells International conference

    David Sulzer, Satoru Iuchi, Koji Yasuda

    The 6th JCS (Japan-Czech-Slovakia) Symposium on Theoretical Chemistry 

    　More details

    Event date： 2015.10

    Language：English   Presentation type：Oral presentation (invited, special)  

    Country：Slovakia  

  11. Toward Improvement of DSSC through Calculation of Lifetime International conference

    David Sulzer, Satoru Iuchi, Koji Yasuda

    The satellite symposium of International Congress of Quantum Chemistry 2015: Novel computational methods for quantitative electronic structure calculations 

    　More details

    Event date： 2015.6

    Language：English   Presentation type：Poster presentation  

    Country：Japan  

  12. Theoretical study of the structure and property of Pt nanoparticles in solution International conference

    Koji Yasuda

    International Symposium on EcoTopia Science 2013 

    　More details

    Event date： 2013.12

    Language：English   Presentation type：Oral presentation (general)  

    Country：Japan  

  13. Quantum Chemistry on GPUs

    Koji Yasuda, Ryota Koga

    　More details

    Event date： 2013.6

    Language：Japanese   Presentation type：Oral presentation (invited, special)  

    Country：Japan  

  14. Acceleration of Quantum Chemistry and Chemical Similarity calculations on GPGPU architecture towards faster virtual screening International conference

    R. Koga, Y. Furukawa, K. Yasuda

    245th ACS National Meeting 

    　More details

    Event date： 2013.4

    Language：English   Presentation type：Poster presentation  

    Country：United States  

  15. メニーコアプロセッサと量子化学

    安田耕二

    第3回CMSI研究会 

    　More details

    Event date： 2012.12

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：自然科学研究機構　岡崎コンファレンスセンター   Country：Japan  

  16. Acceleration of Quantum Chemistry and Chemical Similarity calculations on GPGPU architecture towards faster virtual screening

    Y. Furukawa, R. Koga, K. Yasuda, N. Nariai

    Joint Conference on Informatics in Biology, Medicine and Pharmacology 

    　More details

    Event date： 2012.10

    Language：English   Presentation type：Poster presentation  

    Country：Japan  

    The possibility of the molecular modeling and the virtual screening increases as the increase of the computational resources. Today biologically important macromolecules, such as proteins, are within the scope of electronic-structure calculation by using fragment molecular orbital (FMO) method. Also there are several well established methods to measure chemical similarity computationally. LINGO is such a method by comparing SMILES representations of two molecules. Looking at the development of recent computer, many-core processors such as graphics processing units (GPUs) would be key technology for future high-performance computation. General-purpose GPU (GPGPU) is successfully applied for many kinds of problems in high performance computation.
    Since 2007 we developed the method to accelerate the molecular orbital calculation by using NVIDIA GPUs. This study produced the XA-CUDA-QM add-in library to accelerate standard QM software (GAMESS-US etc). Recently we extended its functionality such as using d-orbital basis set, FMO trimer calculation (FMO3), and energy gradient calculation, which will be presented. We also examine a performance on the newest NVIDIA's GPU, GTX680, called Kepler, and found it excellent to accelerate FMO.
    Second, we develop a LINGO similarity calculation method to utilize both CPUs and GPUs at the same time. Our method is based on SIML reported to accelerate LINGO by using GPGPU.

  17. メニーコアプロセッサによる量子化学とその応用

    安田 耕二，古川 祐貴，古賀 良太

    分子科学討論会2012 

    　More details

    Event date： 2012.9

    Language：Japanese   Presentation type：Poster presentation  

    Venue：東京大学　本郷キャンパス   Country：Japan  

  18. Acceleration of computational quantum chemistry by AVX + CUDA on heterogeneous computer architectures International conference

    Yuki Furukawa, Ryota, Koji Yasuda

    242th ACS National Meeting & Exposition 

    　More details

    Event date： 2012.3

    Language：English   Presentation type：Poster presentation  

    Country：Japan  

  19. Accerelation of Quantum Chemistry and Chemical Similarity calculations on GPGPU architecture toward faster virtual screening International conference

    Y. Furukawa, R. Koga, N. Nariai, K. Yasuda

    [2] International Conference on Rare Diseases & Orphan Drugs 2012 

    　More details

    Event date： 2012.2

    Language：English   Presentation type：Oral presentation (general)  

    Country：Japan  

  20. Rational Material Design by Quantum Chemistry International conference

    Koji Yasuda, Yuji Kawamatsu

    International Symposium on EcoTopia Science 

    　More details

    Event date： 2011.12

    Language：English   Presentation type：Poster presentation  

    Country：Japan  

  21. メニーコアプロセッサによる量子シミュレーション

    安田耕二

    第34回情報科学討論会 

    　More details

    Event date： 2011.11

    Language：Japanese   Presentation type：Oral presentation (keynote)  

    Venue：長崎大学文教キャンパス   Country：Japan  

  22. Acceleration of computational quantum chemistry by heterogeneous computer architectures International conference

    Y. Furukawa, R. Koga, K. Yasuda

    [1] JSST 2011 International Conference on Modeling and Simulation Technology 

    　More details

    Event date： 2011.10

    Language：English   Presentation type：Oral presentation (general)  

    Country：Japan  

  23. 並列対角化による密度行列の解法

    川松裕史, 安田耕二

    第５回分子科学討論会 

    　More details

    Event date： 2011.9

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：札幌コンベンションセンター   Country：Japan  

  24. Parallel Diagonalization and the Density Matrix International conference

    Koji Yasuda

    JCS Symposium on Theoretical Chemistry 2011 

    　More details

    Event date： 2011.5

    Language：English   Presentation type：Oral presentation (general)  

    Country：Czech Republic  

  25. Parallel diagonalization and the density matrix completion International conference

    Yuji Kawamatsu, Koji Yasuda

    The 4th Japan-Czech-Slovak (JCS) Symposium for Theoretical and Computational Chemistry 

    　More details

    Event date： 2011.5

    Language：English   Presentation type：Poster presentation  

    Country：Czech Republic  

  26. Acceleration of FMO by CPU-GPGPU hybrid calculation International conference

    Yuki Furukawa, Ryota Koga, Koji Yasuda

    241st ACS National Meeting & Exposition 

    　More details

    Event date： 2011.3

    Language：English   Presentation type：Poster presentation  

    Country：Japan  

  27. Acceleration of fragment molecular orbital method by GPU International conference

    SC10 

    　More details

    Event date： 2010.11

    Language：English   Presentation type：Poster presentation  

  28. メニーコアプロセッサによる量子化学計算

    CMSI研究会「新量子相・新物質の基礎科学」 

    　More details

    Event date： 2010.11

    Language：Japanese   Presentation type：Oral presentation (general)  

    Country：Japan  

  29. GPUを用いたフラグメント分子軌道法の高速化

    古賀良太、古川祐貴、安田耕二

    CBI学会2010年大会 

    　More details

    Event date： 2010.9

    Language：Japanese   Presentation type：Oral presentation (general)  

    Country：Japan  

  30. GPGPUによる量子化学計算の高速化

    古川祐貴、古賀良太、安田耕二

    分子科学討論会2010 

    　More details

    Event date： 2010.9

    Language：Japanese   Presentation type：Poster presentation  

    Country：Japan  

  31. 量子化学計算について

    安田耕二

    第２回アクセラレーション技術発表討論会 

    　More details

    Event date： 2010.9

    Language：Japanese   Presentation type：Oral presentation (general)  

    Country：Japan  

  32. GPGPUは電子状態計算に使えるか

    安田耕二

    第23期CAMMフォーラム7月合宿例会本例会 

    　More details

    Event date： 2010.7

    Language：Japanese   Presentation type：Oral presentation (invited, special)  

  33. Harvard-Riken Joint Symposium :Application of GPU Computation to Brain Science, Quantum Science, Astronomy, Fluid Dynamics and other sciences

    Density Functional Calculations on GPUs 

    　More details

    Event date： 2009.8

    Language：English   Presentation type：Poster presentation  

    Country：Japan  

  34. ストリーミングプロセッサによる科学技術計算

    シンポジウム「革新的量子化学の展開」 

    　More details

    Event date： 2009.5

    Language：Japanese   Presentation type：Oral presentation (invited, special)  

    Country：Japan  

  35. Local approximation of the correlation energy functional in the density matrix functional theory International conference

    安田耕二

    WE-Heraeus-Seminar: Modern Aspects of Many-Electron Theory 

    　More details

    Event date： 2001

    Language：English   Presentation type：Poster presentation  

  36. Electronic structure theory based on the reduced density matrices

    安田耕二

    Okazaki Conference “Molecular Orbital Theory for the New Millennium” 

    　More details

    Event date： 2000

    Language：English   Presentation type：Oral presentation (invited, special)  

    Country：Japan  

▼display all

To the head of Presentations.▲

Other research activities 1

  1. Comment on Energy-Time Uncertainty Relations in Quantum Measurements

    2018.9

    　More details

    arXiv.org > quant-ph > arXiv:1809.06539

To the head of Other research activities.▲

Research Project for Joint Research, Competitive Funding, etc. 4

  1. フラグメント分子軌道法を中核とした量子計算創薬システムの開発

    2011.4 - 2012.3

    科学技術振興機構 A-STEP フィージビリティスタディ（シーズ顕在化タイプ、起 業検証タイプ） 

    　 More details

    Grant type：Competitive

  2. GPGPUによる量子化学計算の高速化

    2010.4 - 2010.9

    国内共同研究 

  3. GPGPUによる量子化学計算の高速化

    2009.10 - 2010.3

    国内共同研究 

  4. ＧＲＡＰＥ型専用計算機による量子化学

    2006

To the head of Research Project for Joint Research, Competitive Funding, etc..▲

KAKENHI (Grants-in-Aid for Scientific Research) 6

  1. グラフニューラルネットワークによる有機遷移金属反応の機械学習

    Grant number：21K12027  2021.4 - 2024.3

    科学研究費助成事業  基盤研究(C)

    安田 耕二

    　 More details

    Authorship：Principal investigator 

    Grant amount：\2990000 （ Direct Cost: \2300000 、 Indirect Cost：\690000 ）

    この研究は、既知の有機遷移金属反応を特別なニューラルネットに学習させて、新規反応をひらめかせたり、良い遷移金属触媒を発見することを目指します。そのために、遷移金属を含む分子構造をはっきり認識する、グラフニューラルネットを開発します。また、有機遷移金属の反応を実験論文などから収集し、データベースを構築します。ニューラルネットに反応パターンを学習させ、新しい反応を予想します。これを量子化学計算でシュレーディンガー方程式を解き検証します。人工知能でこの手続きを自律的、大規模かつ徹底的に行い、実験化学者の知能を超える事を目指します。
    原著論文を参照しながら、実験で報告された反応式から素反応を推定し、機械学習可能なデータベースに整理した。US patentから収集された公開データから約17万個、CAS（アメリカ化学会）から提供頂いた反応から約2万個の素反応が準備できた。素反応ごとに、種類（酸化的付加、還元的脱離など）や結合変化（できる/切れる結合）を記録し、酸化反応など単純なものを除き、学習用データセットとした。
    出発物を与えると、結合変化を予想するグラフニューラルネットを作った。各素反応の出発物と生成物の対を与え、教師付きで学習を行った。予測精度の高いネットワーク構造を探した。結合の種類を考慮するいわゆるNNConvという畳み込みが有効だった。最適化の結果、素反応のテストデータのうち、95%を正しく予測できた。このグラフニューラルネットは、既知の有機遷移金属錯体の反応パターンを、とても良く「覚えている」と言える。
    既知の反応データベースを検索するのとは異なり、未知だが類似した反応でも予測できる点が特筆される。また、ニューラルネットによる画像認識などと同様に、人が判別アルゴリズムや特徴量を設計する必要が無い。類似反応の検索や提案、計算機シミュレーションによる有望な反応の自動計算、に応用可能だと思われる。データが準備できれば、既知の有機遷移金属反応を全て学習させることも不可能ではないと思われる。
    以上の結果をまとめ、国内学会や国際学会で発表した。論文にまとめ投稿準備中である。
    当初の予定通りに進展している。研究用のツール類の開発も進み、類似や派生研究を進めることも可能になった。この分野の発展は速いので、タイムリーに学会や論文発表をすることが特に必要である。グラフニューラルネットが反応をどのように「理解」しているか（いわゆる説明可能性）については、まだ良く分からない。
    光学異性体など、触媒分野で興味を持たれている課題に応用することを考えたい。計算機シミュレーションによる有望な反応の自動計算など、情報技術の発展により特に恩恵を受ける分野を推進したい。人によるデータ確認（キュレーション）にまだ手間がかかる。機械学習でこれを軽減する工夫をしたい。

  2. Precise Molecular Design of Organic Friction Modifiers by Large-Scale Molecular Simulations, Advanced Measurements, and Chemical Syntheses

    Grant number：21H01238  2021.4 - 2024.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    　 More details

    Authorship：Coinvestigator(s) 

  3. 太陽電池における光電変換の基礎過程の研究と変換効率最適化・長寿命化にむけた大規模数値計算

    2014.4 - 2015.3

    科学研究費補助金  「HPCI戦略プログラム」分野2（新物質・エネルギー創成）第四部会 特別支援課題

    　 More details

    Authorship：Principal investigator 

  4. GRAPE型専用計算機による量子化学

    2006.4 - 2008.3

    科学研究費補助金  若手研究(B)

    安田耕二

    　 More details

    Authorship：Principal investigator 

  5. 完全基底関数効果を含む分子軌道法の開発と応用

    2001.4 - 2004.3

    科学研究費補助金  基盤研究(B)

    天能 精一郎

    　 More details

    Authorship：Coinvestigator(s) 

  6. 分子や固体の電子状態を解明する、密度行列汎関数理論の開発

    1999.4 - 2002.3

    科学研究費補助金  特定領域研究

    　 More details

    Authorship：Principal investigator 

▼display all

To the head of KAKENHI (Grants-in-Aid for Scientific Research).▲
 

Teaching Experience (On-campus) 20

  1. 化学基礎II

    20222

    　詳細を見る

    情報学部1年向けの理系基礎の講義を、2名で共同開講した。

  2. 化学情報学特論

    2018

  3. 大規模複雑系計算特論

    2018

  4. 化学基礎II

    2018

  5. 大規模複雑系計算特論

    2017

  6. 情報可視化論特論

    2017

  7. 化学情報学特論

    2017

  8. 化学基礎II

    2017

  9. 化学基礎II

    2016

  10. 化学基礎II

    2015

  11. 対称性と微分方程式特論

    2015

  12. 複雑系科学特論

    2014

  13. 化学基礎II

    2014

  14. 化学基礎II

    2013

  15. 対称性と微分方程式特論

    2013

  16. Fundamentals of Chemistry II

    2012

  17. Fundamentals of Chemistry II

    2011

  18. 複雑系科学特論

    2011

  19. 化学基礎II

    2009

    　詳細を見る

    物理化学、量子化学の入門を講義する。

  20. 複雑系科学実験1

    2009

    　詳細を見る

    数値計算、古典力学の計算機シミュレーション、並列処理について講義し、実習を行う。

▼display all

To the head of Teaching Experience (On-campus).▲