Faculty Profiles - AOKI Setsuyuki

Papers - AOKI Setsuyuki

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Nuclear interactions between the Pseudo-Response Regulator clock proteins and the Multi-Step Phosphorelay mediator Histidine-containing phosphotransfers in the moss Physcomitrium patens Reviewed

Shu Anami, Takafumi Yamashino, Haruki Kikuchi, Ryo Suzuki, Setsuyuki Aoki

Biochemical and Biophysical Research Communications Vol. 733 page： 150734 2024.9

Light responses during early day phases of CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) and PSEUDO-RESPONSE REGULATOR (PRR) homologous genes in the moss Physcomitrium patens Reviewed International coauthorship

Katsuhiro Chiso, Takafumi Yamashino, Ryo Suzuki, Tanja Gans, Silvia Trogu, Jon Hughes and Setsuyuki Aoki

Photochemistry and Photobiology 2024

Diurnal control of intracellular distributions of PAS-Histidine Kinase 1 and its interactions with partner proteins in the moss Physcomitrium patens Reviewed

Haruki Kikuchi, Takafumi Yamashino, Shu Anami, Ryo Suzuki, Mamoru Sugita and Setsuyuki Aoki

Biochemical and Biophysical Research Communications Vol. 616 page： 1 - 7 2022.8

Quantification of cyanobacterial cyclic di-guanosine monophosphate (c-di-GMP) by liquid chromatography electrospray ionization tandem mass spectrometry Reviewed

Kameda M., Kanaly R.A., Harada M., Aoki S., Tukada H., Kutsuna S.

Journal of Microbiological Methods Vol. 196 page： 106468 2022.5

Language：Japanese Publishing type：Research paper (scientific journal) Publisher：Journal of Microbiological Methods

Cyclic di-guanosine monophosphate (c-di-GMP) is a second messenger found ubiquitously in bacteria. This signaling molecule regulates a variety of physiological activities such as phototaxis and flocculation in cyanobacteria and is critical for their environmental adaptation. Although genes encoding the enzymes for synthesis and/or degradation of c-di-GMP are found in the genomes of both multicellular and unicellular cyanobacteria, little is known about the biological functions of these enzymes in cyanobacterial cells. Here we have established a robust and highly sensitive liquid chromatography tandem mass spectrometry (LC-MS/MS)-based method for c-di-GMP quantification using a cost-effective solvent, methanol. Quantification methods were validated by measuring c-di-GMP in the cyanobacterium Synechococcus elongatus PCC 7942 through spiking and recovery assays after which the method was applied to examine short-term changes in cellular levels of c-di-GMP in response to a transition from light to dark or from dark to light in S. elongatus. Results showed that a transient increase in c-di-GMP upon transitioning from light to dark was occurring which resembled responses involving cyclic adenosine monophosphate and other second messengers in cyanobacteria. These findings demonstrated that our method enabled relatively specific and sensitive quantification of c-di-GMP in cyanobacteria at lower cost.

DOI： 10.1016/j.mimet.2022.106468

Scopus

PubMed

Physcomitrium patens pentatricopeptide repeat protein PpPPR_32 is involved in the accumulation of psaC mRNA encoding the iron sulfur protein of photosystem I Reviewed

Ryo Suzuki, Chieko Sugita, Setsuyuki Aoki and Mamoru Sugita

Genes to Cells 2022.2

Red light-regulated interaction of PAS histidine kinases with partner HPt proteins in Physcomitrium patens Reviewed

Shu Anami, Takafumi Yamashino, Ryo Suzuki, Kota Nakai, Kensuke Sato, Bowen Wu, Masashi Ryo, Mamoru Sugita and Setsuyuki Aoki

Genes to Cells Vol. 26 ( 9 ) page： 698 - 713 2021

Bioluminescence burst caused by a process in carbohydrate metabolism in a luciferase reporter strain of Escherichia coli. Reviewed

Aiba K, Kobayashi Y, Aoki S.

Biochemical and Biophysical Research Communications Vol. 532 ( 2 ) page： 185-189 2020.9

PAS-histidine kinases PHK1 and PHK2 exert oxygen-dependent dual and opposite effects on gametophore formation in the moss Physcomitrella patens Reviewed

Masashi Ryo, Takafumi Yamashino, Hisanori Yamakawa, Yuichi Fujita, Setsuyuki Aoki

Biochemical and Biophysical Research Communications Vol. 503 ( 4 ) page： 2861-2865 2018.8

Light-regulated PAS-containing histidine kinases delay gametophore formation in the moss Physcomitrella patens Reviewed

Masashi Ryo, Takafumi Yamashino, Yuji Nomoto, Yuki Goto, Mizuho Ichinose, Kensuke Sato, Mamoru Sugita, Setsuyuki Aoki

Journal of Experimental Botany Vol. 69 ( 20 ) page： 4839-4851 2018.7

Diversity of plant circadian clocks: insights from studies of Chlamydomonas reinhardtii and Physcomitrella patens. Reviewed

Masashi Ryo, Takuya Matsuo, Takafumi Yamashino, Mizuho Ichinose, Mamoru Sugita and Setsuyuki Aoki

Plant Signaling & Behavior Vol. 11 ( 1 ) page： e1116661 2016.1

Posttranslationally caused bioluminescence burst of the Escherichia coli luciferase reporter strain Reviewed

Yamato ideguchi, Yuta Oshikoshi, Masashi Ryo, Shogo Motoki, Takashi Kuwano, Takafumi Tezuka and Setsuyuki Aoki

Archives of Microbiology Vol. 198 ( 1 ) page： 35-41 2016.1

Visual discrimination learning in the small octopus Octopus ocellatus Reviewed

Mitsuru Tomita and Setsuyuki Aoki

Ethology Vol. 120 ( 9 ) page： 863-672 2014.9

Authorship：Lead author Language：English Publishing type：Research paper (scientific journal)

Octopus ocellatus is a small benthic species of octopus that is easy to rear and spawns large eggs during a short life cycle. These and other features of O. ocellatus may make it an advantageous subject for a broad range of behavioral studies, including those involving various types of learning. However, no type of learning has been studied in O. ocellatus. In a successive visual discrimination task, in which a `positive' or `negative' stimulus (white or black rectangle) was presented to a subject octopus and appropriate rewards or punishments were given to the subject, the rate of `correct' responses (i.e., touches to the positive stimulus or refraining from the negative stimulus) gradually increased. Moreover, `observer' octopuses that observed another octopus performing a visual discrimination task in which reward was also given to the `incorrect' responses (touches to the negative stimulus) showed a higher ratio of incorrect responses in their test sessions. These results, coupled with the physical characteristics of O. ocellatus, indicate that this species is potentially suitable for neurogenetic and neuroembryological studies of learning.

DOI： 10.1136/bjophthalmol-2016-310069

Cyclic bis(3'-5')diadenylic acid (c-di-AMP) analogs promote the activities of photosynthesis and respiration of Chlamydomonas reinhardtii Invited Reviewed

Takafumi Tezuka, Hiroshi Shirouzu, Keigo Ishida, Noritaka Suzuki, Takuya Matsuo, Kin-ichi Oyama, Setsuyuki Aoki and Masaki Tsukamoto

American Journal of Plant Sciences Vol. 5 ( 1 ) page： 24-28 2014.1

Firefly luciferase as the reporter for transcriptional response to the environment in Escherichia coli Reviewed

Masashi Ryo, Yuta Oshikoshi, Shosei Doi, Shogo Motoki, Atsuko Niimi and Setsuyuki Aoki

Analytical Biochemistry Vol. 443 ( 2 ) page： 211-213 2013.9

Synthesis of 2'-modified cyclic bis(3'-5')diadenylic acids (c-di-AMPs) and their promotion of cell division in a freshwater green alga Reviewed

Takafumi Tezuka, Noritaka Suzuki, Keigo Ishida, Kin-ichi Oyama, Setsuyuki Aoki and Masaki Tsukamoto

Chemistry Letters Vol. 41 ( 12 ) page： 1723-1725 2012.12

Heterologous expression and functional characterization of a Physcomitrella Pseudo Response Regulator homolog, PpPRR2, in Arabidopsis Reviewed

Santosh B. Satbhai, Takashi Yamashino, Takeshi Mizuno and Setsuyuki Aoki

Bioscience, Biotechnolgy, and Biochemistry Vol. 75 ( 4 ) page： 786-789 2011.5

Pseudo-Response Regulator (PRR) homologs of the moss Physcomitrella patens: Insights into the evolution of the PRR family in land plants. Reviewed

Santosh B. Satbhai, Takafumi Yamashino, Ryo Okada, Yuji Nomoto, Takeshi Mizuno, Yuki Tezuka, Tomonori Itoh, Mitsuru Tomita, Susumu Otsuki and Setsuyuki Aoki

DNA Research Vol. 18 ( 1 ) page： 39-52 2011

*Functional characterization of CCA1/LHY homolog genes, PpCCA1a and PpCCA1b, in the moss Physcomitrella patens Reviewed

Ryo Okada, Sayo Kondo, Santosh B. Satbhai, Nobutoshi Yamaguchi, Masashi Tsukuda and Setsuyuki Aoki

Plant Journal Vol. 60 ( 3 ) page： 551-563 2009

Photoperiod-dependent regulation of cell growth by PpCCA1a and PpCCA1b genes encoding single-myb clock proteins in the moss Physcomitrella pate Reviewed

Ryo Okada, Santosh B. Satbhai and Setsuyuki Aoki

Genes and Genetic Systems Vol. 84 ( 5 ) page： 379-384 2009

*The genome of the moss Physcomitrella patens reveals evolutionary insights into the conquest of land by plants. Reviewed

Stefan A. Rensing et al.

Science Vol. 319 ( 5859 ) page： 64-69 2008

*The plastid sigma factor SIG5 is involved in the diurnal regulation of the chloroplast gene psbD in the moss Physcomitrella patens Reviewed

Kazuhiro Ichikawa, Akane Shimizu, Ryo Okada, Santosh B. Satbhai, and Setsuyuki Aoki.

FEBS Letters Vol. 582 ( 3 ) page： 405-409 2008

A compact multichannel apparatus for automated real-time monitoring of bioluminescence. Reviewed

Kazuhisa Okamoto, Masahiro Ishiura, Tatsuharu Torii and Setsuyuki Aoki.

Journal of Biochemical and Biophysical Methods Vol. 70 ( 4 ) page： 535-538 2007

The moss Physcomitrella patens as a potential model plant for studying circadian rhythms. Reviewed

Setsuyuki Aoki

Bryological Research Vol. 9 ( 2 ) page： 50-59 2006

Differential expression on a daily basis of plastid sigma factor PpSig genes from the moss Physcomitrella patens: Regulatory interactions among PpSig5, the circadian clock and blue light signaling mediated by cryptochromes. Reviewed

Ichikawa Kazuhiro, Mamoru Sugita, Takato Imaizumi, Masamitsu Wada and Setsuyuki Aoki

Plant Physiology Vol. 136 page： 4285-4298 2004

Circadian expression of the PpLhcb2 gene encoding a major light-harvesting chlorophyll a/b-binding protein in the moss Physcomitrella patens. Reviewed

Setsuyuki Aoki, Seiji Kato, Kazuhiro Ichikawa and Masashi Shimizu

Plant and Cell Physiology Vol. 45 ( 1 ) page： 68-76 2004

Photoperiod-regulated expression of the PpCOL1 gene encoding a homolog of CO/COL proteins in the moss Physcomitrella patens. Reviewed

Masashi Shimizu, Kazuhiro Ichikawa and Setsuyuki Aoki

Biochemical and Biophysical Research Communications Vol. 324 page： 1296-1301 2004

Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus. Reviewed

Chika Sugiura, Yuki Kobayashi, Setsuyuki Aoki, Chieko Sugita and Mamoru Sugita

Nucleic Acids Research Vol. 31 ( 18 ) page： 5324-5331 2003

A promoter-trap vector for clock-controlled genes in the cyanobacterium Synechocystis sp. PCC 6803. Reviewed

Setsuyuki Aoki, Takao Kondo, and Masahiro Ishiura.

Journal of Microbiological Methods Vol. 49 page： 265-274 2002

Characterization of two genes Sig1 and Sig2 encoding distinct plastid sigma factors in the moss Physcomitrella patens: phylogenetic relationships to plastid s factors in higher plants.

Keishi Hara, Masakatsu Morita, Rieko Takahashi, Mamoru Sugita, Seiji Kato and Setsuyuki Aoki.

FEBS Letters Vol. 499 ( 1-2 ) page： 87-91 2001

Chloroplast transformation in tobacco and the moss Physcomitrella patens. (2001) . . ., Reviewed

Chika Sugiura, Kayo Tsuruya, Setsuyuki Aoki, and Mamoru Sugita

PS2001: Proceedings of 12th International Congress on Photosynthesis Vol. S40-9 (CD) page： - 2001

Cloning and characterization of the cDNA for a plastid sigma factor from the moss Physcomitrella patens.

Keishi Hara, Mamoru Sugita and Setsuyuki Aoki.

Biochimica et Biophysica Acta Vol. 1517 ( 2 ) page： 302-306 2001

Circadian rhythm and cDNA cloning of the clock gene period in the honeybee Apis cerana japonica. Reviewed

Isamu Shimizu, Yutaka Kawai, Masanori Taniguchi, Setsuyuki Aoki.

Zoological Science Vol. 18 page： 779-789 2001

A preliminary study on the discrimination of Japanese chestnuts (Castanea crenata) at the variety level using ITS1 (internal transcribed spacer 1) as a molecular marker. Reviewed

Vol. 15 page： - 2001

Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria Reviewed

Masahiro Ishiura, Shinsuke Kutsuna, Setsuyuki Aoki, Hideo Iwasaki, Carol R. Andersson, Akira Tanabe, Susan S. Golden, Carl H. Johnson, and Takao Kondo.

Science Vol. 281 ( 5382 ) page： 1519 1998

A period-extender gene, pex, that extends the period of the circadian clock in the cyanobacterium Synechococcus sp. strain PCC7942 Reviewed

Shinsuke Kutsuna,Takao Kondo, Setsuyuki Aoki, and Masahiro Ishiura.

Journal of Bacteriology Vol. 180 ( 8 ) page： 2167 1998

Neuroendocrine control of diapause hormone secretion in the silkworm, Bombyx mori. Reviewed

Isamu Shimizu, Setsuyuki Aoki, and Toshio Ichikawa.

Journal of Insect Physiology Vol. 43 ( 12 ) page： 1101-1109 1997

Circadian rhythm of the cyanobacterium Synechocystis sp. strain PCC 6803 in the dark Reviewed

Setsuyuki Aoki, Takao Kondo, Hajime Wada, and Masahiro Ishiura.

Journal of Bacteriology Vol. 179 ( 18 ) page： 5751 1997

Circadian Rhythms in Rapidly Dividing Cyanobacteria Reviewed

Takao Kondo, Tetsuya Mori, Nadya V. Lebedeva, Setsuyuki Aoki, Masahiro Ishiura, and Susan S. Golden.

Science Vol. 275 page： 224 1997

Circadian expression of the dnak gene in the cyanobacterium Synechocystis sp.PCC 6803. Reviewed

Setsuyuki Aoki, Takao Kondo, and Masahiro Ishiura.

Journal of Bacteriology Vol. 177 ( 19 ) page： 5606-5611 1995

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Papers - AOKI Setsuyuki