論文 - 太田 元規
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Itinerary profiling to analyze a large number of protein-folding trajectories 査読有り
M. Ota, M. Ikeguchi, A. Kidera
Biophys. Physicobiol. 13 巻 頁: 295-304 2016年11月
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Interface property responsible for effective interactions of protean segments: Intrinsically disordered regions that undergo disorder-to-order transitions upon binding 査読有り
D. Shaji, T. Amemiya, R. Koike R, M. Ota
BBRC 478 巻 頁: 123-127 2016年9月
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Profile comparison revealed deviation from structural constraint at the positively selected sites 査読有り
H. Oda , M. Ota, H. Toh
Biosystems 147 巻 頁: 67-77 2016年7月
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Multiple-localization and hub proteins 査読有り
M. Ota, H. Gonja, R. Koike, S. Fukuchi
PLoS ONE 11 巻 頁: e0156455 2016年6月
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Comprehensive analysis of motions in molecular dynamics trajectories of the actin capping protein and its inhibitor complexes 査読有り
R. Koike, S. Takeda, Y. Maéda, M. Ota
Proteins 84 巻 頁: 948-956 2016年4月
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Investigation of the fatty acid transporter-encoding genes SLC27A3 and SLC27A4 in autism 査読有り
M. Maekawa, Y. Iwayama, T. Ohnishi, M. Toyoshima, C. Shimamoto, Y. Hisano, T. Toyota, S. Balan, H. Matsuzaki, Y. Iwata, S. Takagai, K. Yamada, M. Ota, S. Fukuchi, Y. Okada, W. Akamatsu, M. Tsujii, N. Kojima, Y. Owada, H. Okano, N. Mori, T. Yoshikawa
Sci. Rep. 5 巻 頁: 16239 2015年11月
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Domain-motion enhanced (DoME) model for efficient conformational sampling of multi-domain proteins 査読有り
C. Kobayashi, Y. Matsunaga, R. Koike, M. Ota, Y. Sugita
J. Phys. Chem. B 119 巻 頁: 14584-14593 2015年11月
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A method for systematic assessment of intrinsically disordered protein regions by NMR 査読有り
N. Goda, K. Shimizu, Y. Kuwahara, T. Noguchi, T. Ikegami, M. Ota, H. Hiroaki
Int. J. Mol. Sci. 16 巻 頁: 15743-15760 2015年7月
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Hierarchical domain-motion analysis of conformational changes in Sarcoplasmic Reticulum Ca2+-ATPase 査読有り
C. Kobayashi, R. Koike, M. Ota, Y. Sugita
Proteins 83 巻 頁: 746-756 2015年4月
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An optimized Npro-based method for the expression and purification of intrinsically disordered proteins for an NMR study 査読有り
N. Goda, N. Matsuo, T. Tenno, S. Ishino, Y. Ishino, S. Fukuchi, M. Ota, H. Hiroaki
IDP 3 巻 頁: 1-6 2015年2月
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Hierarchical description and extensive classification of protein structural changes by Motion Tree 査読有り
R. Koike, M. Ota, A. Kidera
J. Mol. Biol. 426 巻 頁: 752-762 2014年2月
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IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners 査読有り
S. Fukuchi, T. Amemiya, S. Sakamoto, Y. Nobe, K. Hosoda, Y. Kado, SD. Murakami, R. Koike, H. Hiroaki, M. Ota
Nucleic Acids Res. 42 巻 頁: D320-D325 2014年1月
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Exon resequencing of H3K9 methyltransferase complex genes, EHMT1, EHMT2 and WIZ, in Japanese autism subjects 査読有り
S. Balan, Y. Iwayama, M. Maekawa, T. Toyota, T. Ohnishi, M. Toyoshima, C. Shimamoto, K. Esaki, K. Yamada, Y. Iwata, K. Suzuki, M. Ide, M. Ota, S. Fukuchi, M. Tsujii, N. Mori, Y. Shinkai, T. Yoshikawa
Molecular Autism 頁: in the press 2014年
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Accidental interaction between PDZ domains and diclofenac revealed by NMR-assisted virtual screening 査読有り
T. Tenno, N. Goda, Y. Umetsu, M. Ota, K. Kinoshita, H. Hiroaki
Molecules 18 巻 頁: 9567-9581 2013年8月
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Substrate-shielding and hydrolytic reaction in hydrolases 査読有り
Y. Kanematsu, R. Koike, T. Amemiya, M. Ota
81 巻 頁: 926-932 2013年2月
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An assignment of intrinsically disordered regions of proteins based on NMR structures 査読有り
M. Ota, R. Koike, T. Amemiya, T. Tenno, P. R. Romero, H. Hiroaki, A. K. Dunker, S. Fukuchi
J. Str. Biol. 181 巻 頁: 29-36 2013年1月
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Influence of structural symmetry on protein dynamics 査読有り
Y. Matsunaga, R. Koike, M. Ota, J. Tame, A. Kidera
PLos One 7 巻 頁: e50011 2012年11月
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A nobel biclustering approach with iterative optimization to analyze gene expression data 査読有り
S. Sutheworapong, M. Ota, H. Ohta, K. Kinoshita
Adv. Appl. Bioinform. Chem. 5 巻 頁: 23-59 2012年9月
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SCPC: A method to structurally compare protein complexes
R. Koike, M. Ota
Bioinformatics 頁: in press 2012年2月
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IDEAL: intrinsically disordered proteins with extensive annotations and literature
S. Fukuchi, S. Sakamoto, Y. Nobe, SD. Murakami, T. Amemiya, K. Hosoda, R. Koike, H. Hiroaki, M. Ota
Nucleic Acids Res. 頁: in press 2012年