Papers - OTA Motonori
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Dual-wield NTPases: a novel protein family mined from AlphaFold protein structure database Reviewed International journal
K. Sakuma, R, Koike, M. Ota
Prot. Sci. Vol. in press 2024
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Elastic network model reveals distinct flexibilities of capping proteins bound to CARMIL and twinfilin-tail Reviewed International journal
Koike, R; Ota, M
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS Vol. 92 ( 1 ) page: 37 - 43 2024.1
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Prediction of chaperonin GroE substrates using small structural patterns of proteins Reviewed International journal
Minami Shintaro, Niwa Tatsuya, Uemura Eri, Koike Ryotaro, Taguchi Hideki, Ota Motonori
FEBS OPEN BIO Vol. 13 ( 4 ) page: 779 - 794 2023.4
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How AlphaFold2 predicts conditionally folding regions annotated in an intrinsically disordered protein database Reviewed International journal
H. Anbo, K. Sakuma, S. Fukuchi, M. Ota
Biology Vol. 12 page: 182 2023.1
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Classification of proteins inducing liquid-liquid phase separation: sequential, structural and functional characterization Invited Reviewed International journal
Ozawa Yuhei, Anbo Hiroto, Ota Motonori, Fukuchi Satoshi
JOURNAL OF BIOCHEMISTRY 2022.12
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Structures and mechanisms of actin ATP hydrolysis Reviewed International journal
Kanematsu Y., Narita A., Oda T., Koike R., Ota M., Takano Y., Moritsugu K., Fujiwara I., Tanaka K., Komatsu H., Nagae T., Watanabe N., Iwasa M., Maéda Y., Takeda S.
Proceedings of the National Academy of Sciences of the United States of America Vol. 119 ( 43 ) page: e2122641119 2022.10
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Evaluating cepharanthine analogues as natural drugs against SARS-CoV-2 Reviewed
FEBS OPEN BIO Vol. 12 ( 1 ) page: 285 - 294 2021.11
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Current status of structure-based drug repurposing against COVID-19 by targeting SARS-CoV-2 proteins Invited Reviewed
Hijikata Atsushi, Shionyu Clara, Nakae Setsu, Shionyu Masafumi, Ota Motonori, Kanaya Shigehiko, Shirai Tsuyoshi
Biophys. Physicobiol. Vol. 18 ( 0 ) page: 226 - 240 2021.10
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Structural Insights into the Regulation of Actin Capping Protein by Twinfilin C-terminal Tail Reviewed
Takeda Shuichi, Koike Ryotaro, Fujiwara Ikuko, Narita Akihiro, Miyata Makoto, Ota Motonori, Maeda Yuichiro
J. Mol. Biol. Vol. 433 ( 9 ) page: 166891 2021.4
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Crystal structure of human V-1 in the apo form Reviewed
S. Takeda, R. Koike, T. Nagae, I. Fujiwara, A. Narita, Y. Maéda, M. Ota
Acta. Cryst. F Vol. 77 ( Pt 1 ) page: 13 - 21 2021.1
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Knowledge-based Modeling of SARS-CoV-2 Proteins and Predicting its Potential Drugs Invited Reviewed
HIJIKATA Atsushi, SHIONYU-MITSUYAMA Clara, NAKAE Setsu, SHIONYU Masafumi, OTA Motonori, KANAYA Shigehiko, SHIRAI Tsuyoshi
Seibutsu Butsuri Vol. 61 ( 2 ) page: 102 - 106 2021
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Knowledge-based strutural models of SARS-CoV-2 proteins and their complexes with potential drugs Reviewed
A. Hijikata, C. Shionyu-Mitsuyama, S. Nakae, M. Shionyu, M. Ota, S. Kanaya, T. Shirai
FEBS Lett. Vol. 594 page: 1960 - 1973 2020.5
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All Atom Motion Tree detects side chain-related motions and their coupling with domain motion in proteins Reviewed
R. Koike, M. Ota
Biophys. Physicobiol. ( 16 ) page: 280-286 2019.11
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Protein kinases phosphorylate long disordered regions in intrinsically disordered proteins Reviewed
R. Koike, M. Amano, K. Kaibuchi, M. Ota
Protein Sci. Vol. 29 page: 564-571 2019.11
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MICAN-SQ: a sequential protein structure alignment program that is applicable to monomers and all types of oligomers Reviewed
S. Minami, K. Sawada, M. Ota, G. Chikenji
Bioinformatics Vol. 34 page: 3324-3331 2018.10
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Using 1HN amide temperature coefficients to define intrinsically disordered regions: An alternative NMR method Reviewed
H. Okazaki, N. Matsuo, T. Tenno, N. Goda, Y. Shigemitsu, M. Ota, H. Hiroaki
Protein Sci. Vol. 27 page: 1821-1830 2018.8
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Discovery of Cryoprotective Activity in Human Genome-Derived Intrinsically Disordered Proteins Reviewed
N. Matsuo, N. Goda, K. Shimizu, S. Fukuchi, M. Ota, H. Hiroaki
Int. J. Mol. Sci. Vol. 19 page: 401 2018.1
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Large-scale aggregation analysis of eukaryotic proteins reveals an involvement of intrinsically disordered regions in protein folding Reviewed
E. Uemura, T. Niwa, S. Minami, K. Takemoto, S. Fukuchi, K. Machida, H. Imataka, T. Ueda, M. Ota, H. Taguchi
Sci. Rep. Vol. 8 page: 678 2018.1
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Structural changes of homodimers in the PDB Reviewed
R. Koike, T. Amemiya, T. Horii, M. Ota
J. Str. Biol. page: in press 2018
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Rules for connectivity of secondary structure elements of proteins: Two-layer αβ sandwiches Reviewed
S. Minami, G. Chikenji, M. Ota
Prot. Sci. Vol. 26 page: 2257-2267 2017.11