Papers - TERADA, Tomoki
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Landscape-Based View on the Stepping Movement of Myosin VI Invited Reviewed International coauthorship
Tomoki P Terada, Qing-Miao Nie, Masaki Sasai
Journal of Physical Chemistry B Vol. 126 ( 38 ) page: 7262 - 7270 2022.9
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Folding pathway of a multidomain protein depends on its topology of domain connectivity Reviewed
Takashi Inanami, Tomoki P. Terada, Masaki Sasai
Proceedings of the National Academy of Sciences of the United States of America Vol. 111 ( 45 ) page: 15969 - 15974 2014.9
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Coupling of Lever Arm Swing and Biased Brownian Motion in Actomyosin Reviewed International coauthorship
Qing-Miao Nie, Akio Togashi, Takeshi N. Sasaki, Mitsunori Takano, Masaki Sasai, Tomoki P. Terada
PLoS Computational Biology Vol. 10 ( 4 ) page: e1003552, 1-13 2014.4
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Time Scales in Epigenetic Dynamics and Phenotypic Heterogeneity of Embryonic Stem Cells Reviewed
Masaki Sasai, Yudai Kawabata, Koh Makishi, Kazuhito Itoh, Tomoki P. Terada
PLoS Computational Biology Vol. 9 ( 12 ) page: e1003380,1-17 2013.12
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Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor Reviewed
Mitsunori Takano, Tomoki P. Terada, Masaki Sasai
Proceedings of the National Academy of Sciences of the United States of America Vol. 107 ( 17 ) page: 7769 - 7774 2010.4
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Correlation between evolutionary structural development and protein folding Reviewed
Chioko Nagao, Tomoki P. Terada, Tetsuya Yomo, Masaki Sasai
Proceedings of the National Academy of Sciences of the United States of America Vol. 102 ( 52 ) page: 18950 - 18955 2005.12
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Conformational change of actomyosin complex drives the multiple stepping movement Reviewed
Tomoki P. Terada, Masaki Sasai, Tetsuya Yomo
Proceedings of the National Academy of Sciences of the United States of America Vol. 99 ( 14 ) page: 9202-9206 2002.6
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A Landscape-Based View on the Stepping Movement of Myosin VI International coauthorship
Tomoki P. Terada, Qing-Miao Nie, Masaki Sasai
Biophysical Journal Vol. 118 ( 3 ) page: 436A - 437A 2020.2
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A landscape-based view on the stepping movement of myosin VI International coauthorship
T. P. Terada, Q. M. Nie, M. Sasai
European Biophysics Journal with Biophysics Letters Vol. 48 ( Supplement 1 ) page: S234 - S234 2019.7
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Single-molecular and ensemble-level oscillations of cyanobacterial circadian clock Reviewed
Sumita Das, Tomoki P. Terada, Masaki Sasai
Biophysics and Physicobiology Vol. 15 page: 136 - 150 2018.5
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Role of ATP Hydrolysis in Cyanobacterial Circadian Oscillator Reviewed
Sumita Das, Tomoki P. Terada, Masaki Sasai
Scientific Reports Vol. 7 page: 17469 2017.12
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Cooperativity and modularity in protein folding Invited Reviewed
Masaki Sasai, George Chikenji, Tomoki P. Terada
Biophysics and Physicobiology Vol. 13 page: 281 - 293 2016.11
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Importance of consensus region of multiple-ligand templates in a virtual screening method Reviewed
Tatsuya Okuno, Koya Kato, Shintaro Minami, Tomoki P. Terada, Masaki Sasai, George Chikenji
Biophysics and Physicobiology Vol. 13 page: 149 - 156 2016.7
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Loose Mechanism of Eukaryotic Gene Regulation and Chromatin Dynamics Invited Reviewed
Masaki Sasai, Tomoki P. Terada
Vol. 56 ( 2 ) page: 106 - 108 2016.3
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Physics of Cell Differentiation from Landscape Perspective Invited Reviewed
Tomoki P. Terada
Vol. 70 ( 10 ) page: 765 - 769 2015.10
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VS-APPLE: A Virtual Screening Algorithm Using Promiscuous Protein–Ligand Complexes Reviewed
Vol. 55 ( 6 ) page: 1108 - 1119 2015.6
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アクトミオシンの粗視化モデル解析:モーター機能におけるループの柔らかさの重要性 Invited Reviewed
寺田智樹
生物物理 Vol. 55 ( 3 ) page: 148 - 150 2015.5
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Conformational flexibility of loops of myosin enhances the global bias in the actin-myosin interaction landscape Invited Reviewed
Qing-Miao Nie, Masaki Sasai, Tomoki P. Terada
Physical Chemistry Chemical Physics Vol. 16 ( 14 ) page: 6441-6447 2014.1
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Entropic Mechanism of Allosteric Communication in Conformational Transitions of Dihydrofolate Reductase. Invited Reviewed
Tomoki P. Terada, Toru Kimura, Masaki Sasai
The Journal of Physical Chemistry B Vol. 117 ( 42 ) page: 12864 - 12877 2013.5
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Dynamical Modeling of Three-Dimensional Genome Organization in Interphase Budding Yeast Reviewed
Naoko Tokuda, Tomoki P. Terada, Masaki Sasai
Biophysical Journal Vol. 102 ( 2 ) page: 296 - 304 2012.1
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Synchronization of Circadian Oscillation of Phosphorylation Level of KaiC in vitro Reviewed
Tetsuro Nagai, Tomoki P. Terada, Masaki Sasai
Biophysical Journal Vol. 98 ( 11 ) page: 2469 - 2477 2010.6
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Mechanism of Robust Circadian Oscillation of KaiC Phosphorylation In Vitro Reviewed
Kohei Eguchi, Mitsumasa Yoda, Tomoki P. Terada and Masaki Sasai
Biophysical Journal Vol. 95 ( 4 ) page: 1773 - 1784 2008.5
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Monomer-Shuffling and Allosteric Transition in KaiC Circadian Oscillation Reviewed
Mitsumasa Yoda, Kohei Eguchi, Tomoki P. Terada, Masaki Sasai
PLoS ONE Vol. 2 ( 5 ) page: e408,1-8 2007.5
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タンパク質のダイナミクスとインフォマティクス Invited Reviewed
笹井理生, 寺田智樹
高分子 Vol. 51 ( 6 ) page: 448 2002.6
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分子進化とフォールディング機構 Invited
笹井理生, 寺田智樹
蛋白質 核酸 酵素 Vol. 47 ( 6 ) page: 677 - 683 2002.5
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Nucleotide binding to the chaperonin GroEL: noncooperative binding of ATP analogs and ADP, and cooperative effect of ATP Reviewed
Tomonao Inobe, Tadashi Makio, Etsuko Takasu-Ishikawa, Tomoki P. Terada, Kunihiro Kuwajima
Biochimica et Biophysica Acta Vol. 1545 ( 1-2 ) page: 160 - 173 2001.2
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Equilibrium and Kinetic Studies on Folding of the Authentic and Recombinant Forms of Human α-Lactalbumin by Circular Dichroism Spectroscopy Reviewed International coauthorship
Tapan K. Chaudhuri, Munehito Arai, Tomoki P. Terada, Teikichi Ikura, Kunihiro Kuwajima
Biochemistry Vol. 39 ( 50 ) page: 15643 - 15651 2000.11
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Thermodynamics of nucleotide binding to the chaperonin GroEL studied by isothermal titration calorimetry: evidence for noncooperative nucleotide binding Reviewed
Tomoki P. Terada, Kunihiro Kuwajima
Biochimica et Biophysica Acta Vol. 1431 ( 2 ) page: 269 - 281 1999.5
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Effect of the Extra N-terminal Methionine Residue on the Stability and Folding of Recombinant α-Lactalbumin Expressed in Escherichia coli Reviewed International coauthorship
Tapan K. Chaudhuri, Katsunori Horii, Takao Yoda, Munehito Arai, Shinji Nagata, Tomoki P. Terada, Hidefumi Uchiyama, Teikichi Ikura, Kouhei Tsumoto, Hiroshi Kataoka, Masaaki Matsushima, Kunihiro Kuwajima, Izumi Kumagai
Journal of Molecular Biology Vol. 285 ( 3 ) page: 1179 - 1194 1999.1
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Observation of kaonic hydrogen atom x rays Reviewed International coauthorship
T.M. Ito, R.S. Hayano, S.N. Nakamura, T.P. Terada, M. Iwasaki, D.R. Gill, L. Lee, A. Olin, M. Salomon, S. Yen, K. Bartlett, G.A. Beer, G. Mason, G. Trayling, H. Outa, T. Taniguchi, Y. Yamashita, R. Seki
Physical Review C Vol. 58 ( 4 ) page: 2366 - 2382 1998.10
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A new approach to measure kaonic hydrogen X-rays Reviewed International coauthorship
S.N. Nakamura, M. Iwasaki, K. Bartlett, G.A. Beer, D.R. Gill, R.S. Hayano, T.M. Ito, M. Kuwata, L. Lee, G. Mason, H. Ohkubo, A. Olin, H. Outa, M. Salomon, R. Seki, K. Shibuya, T. Taniguchi, T.P. Terada, G. Trayling, T. Watanabe, Y. Yamashita, S. Yen
Nuclear Instruments and Methods in Physics Research A Vol. 408 ( 2-3 ) page: 438 - 452 1998.5
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Observation of Kaonic Hydrogen Kα X Rays Reviewed International coauthorship
M. Iwasaki, R.S. Hayano, T.M. Ito, S.N. Nakamura, T.P. Terada, D.R. Gill, L. Lee, A. Olin, M. Salomon, S. Yen, K. Bartlett, G.A. Beer, G. Mason, G. Trayling, H. Outa, T. Taniguchi, Y. Yamashita, R. Seki
Physical Review Letters Vol. 78 ( 16 ) page: 3067 - 3069 1997.4
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Cascade calculation of hadronic hydrogen atoms Reviewed
T.P. Terada and R.S. Hayano
Physical Review C Vol. 55 ( 1 ) page: 73 - 87 1997.1
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A Pulse-Processor Based on Rise Time Measurement of Trapezoidal Waveforms by Using a Count-Up ADC Reviewed
M. Kuwata, H. Maeda, K. Husimi, S. Ohkawa, M. Iwasaki, S.N. Nakamura, T.M. Ito, T. Terada
IEEE Transactions on Nuclear Science Vol. 43 ( 3 ) page: 1626 - 1628 1996.6