Papers - YAMATO, Takahisa
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Direct measure of functional importance visualized atom-by-atom for photoactive yellow protein: Application to photoisomerization reaction Reviewed
"A. Yamada, T. Ishikura, T. Yamato"
"PROTEINS: Structure, Function and Bioinformatics" Vol. 55 ( 4 ) page: 1070-1077 2004.6
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Torsion potential works in rhodopsin Reviewed
"A. Yamada, T. Yamato, S. Yamamoto, T. Kakitani"
Photochemistry and Photobiology Vol. 79 ( 5 ) page: 476-486 2004.5
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Protein driven photoisomerization reaction: Ab initio QM/MM study of photoactive yellow protein
"Yamada A, Ishikura T, Yamato T"
BIOPHYSICAL JOURNAL Vol. 84 ( 2 ) page: 270A-270A Part 2 Suppl. S 2003.2
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A Computational Study on the stability of the protonated Schiff base of retinal in rhodopsin Reviewed
"A. Yamada, T. Kakitani, S. Yamamoto, and T. Yamato"
Chem. Phys. Lett. Vol. 366 ( 5-6 ) page: 670-675 2002.12
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Destructive interference in the electron tunneling through protein media Reviewed
"T. Kawatsu, T. Kakitani, T. Yamato"
J. Phys. Chem. B. Vol. 106 ( 43 ) page: 11356-11366 2002.10
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On the anomaly of the tunneling matrix element in long-range electron transfer Reviewed
"T. Kawatsu, T. Kakitani, T. Yamato"
J. Phys. Chem. B. Vol. 106 ( 19 ) page: 5068-5074 2002.5
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Analysis of cis-trans photoisomerization mechanism of rhodopsin based on the tertiary structure of rhodopsin Reviewed
"A. Yamada, T. Yamato, T. Kakitani, S. Yamamoto"
J. Photoscience Vol. 9 page: 51-54 2002
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Unique mechanism of excitation energy transfer and photoisomerization in biological systems Reviewed
"T. Kakitani, T. Kawatsu, A. Kimura, A. Yamada, T. Yamato, S. Yamamoto"
J. Biol. Phys. Vol. 28 ( 3 ) page: 367-381 2002
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Theory of excitation energy transfer in the intermediate coupling case and its application to the photosynthetic antenna systems Reviewed
"Akihiro Kimura, Toshiaki Kakitani, Takahisa Yamato"
International Journal of Modern Physics B Vol. 15 ( 28-30 ) page: 3833-3836 2001.12
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Ab initio MO study on the potential energy surfaces for twisting around C15=N bond of protonated Schiff base of retinal Reviewed
"S. Yamamoto, H. Wasada, T. Kakitani, T. Yamato"
THEOCHEM Vol. 543 page: 79-87 2001.6
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Worm Model for Electron Tunneling in Proteins: Consolidation of the Pathway Model and the Dutton Plot Reviewed
"T. Kawatsu, T. Kakitani, T.Yamato"
J. Phys. Chem. B. Vol. 105 ( 19 ) page: 4424-4435 2001.5
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Ab initio MO study on potential energy surfaces for twisting around C7=C8 and C4-C7 bonds of coumaric acid Reviewed
"A. Yamada, S. Yamamoto, T. Yamato, T. Kakitani"
THEOCHEM Vol. 536 ( 2-3 ) page: 195-201 2001.2
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Theory of excitation energy transfer in the intermediate coupling case. II. Criterion for intermediate coupling excitation energy transfer mechanism and application to the photosynthetic antenna system Reviewed
"A. Kimura, T. Kakitani, T. Yamato"
J. Phys. Chem. B. Vol. 104 ( 39 ) page: 9276-9287 2000.10
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Theory of excitation transfer in the intermediate coupling case Reviewed
"A. Kimura, T. Kakitani, T. Yamato"
J. Luminescence Vol. 87-89 page: 815-817 2000.5
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A novel method for determining electron tunneling pathway in protein Reviewed
"T. Kawatsu, T. Kakitani, T. Yamato"
Inorganica Chimica Acta Vol. 300-302 page: 862-868 2000.4
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Monte Carlo simulation study on the structure and reaction at metal-electrolyte interface. II. Mechanism of nonlinear electrode reactions Reviewed
"N. Goto, T. Kakitani, T. Yamato, Y. Hatano"
J. Phys. Soc. Jpn. Vol. 68 ( 11 ) page: 3729-3737 1999.11
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Ab initio MO study on the potential energy surfaces for twisting around the C11=C12 bond of the protonated Schiff base of retinal Reviewed
"Yamamoto, S., Wasada, H., Kakitani, T., Yamato, T"
THEOCHEM Vol. 461-462 page: 463-471 1999.4
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Molecular Dynamics of a 15-Residue Poly(L-alanine)in Water : Helix Formation and Energetics Reviewed
"M. Takano, T. Yamato, J. Higo, A. Suyama, K. Nagayama"
Journal of the American Chemical Society Vol. 121 ( 4 ) page: 605-612 1999.2
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Molecular dynamics simulation of the excited-state dynamics of bacteriorhodopsin
"T. Yamato, T. Kakitani"
"Photosynthesis: Mechanisms and Effects, Vol. III, G. Garab, ed., Kluwer Academic Publishers, Netherlands" page: 1771-1774 1999
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Novel method to detect a motif of local structures in different protein conformations Reviewed
"H. Wako, T. Yamato"
Protein Engineering Vol. 11 ( 11 ) page: 981-990 1998.11