論文 - 太田 元規
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IDEAL: intrinsically disordered proteins with extensive annotations and literature
S. Fukuchi, S. Sakamoto, Y. Nobe, SD. Murakami, T. Amemiya, K. Hosoda, R. Koike, H. Hiroaki, M. Ota
Nucleic Acids Res. 頁: in press 2012年
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SAHG, a comprehensive database of predicted structures of all human proteins 査読有り
C. Motono, J. Nakata, R. Koike, K. Shimizu, M. Shirota, T. Amemiya, K. Tomii, N. Nagano, N. Sakaya, K. Misoo, M, Sato, A. Kidera, H. Hiroaki, T. Shirai, K. Kinoshita, T. Noguchi, M. Ota
Nucleic Acids Res. 39 巻 頁: D487 2011年
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Cover and spacer insertions: small non-hydrophobic accessories that assist protein oligomerization
H. Nishi, R. Koike, M. Ota
Proteins 79 巻 頁: 2372-2379 2011年
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Actin capping protein and its inhibitor CARMIL: how intrinsically disordered regions function 査読有り
S. Takeda, R. Koike, Y. Nitanai, S. Minakata, Y. Maéda, M. Ota
Phys. Biol. 8 巻 頁: 035005 2011年
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Remarkable improvement in the heat stability of CutA1 from Escherichia coli by rational protein design 査読有り
Y. Matsuura, M. Ota, T. Tanaka, M. Takehira, K. Ogasahara, B. Bagautdinov, N. Kunishima, K. Yutani
J. Biochem. 148 巻 頁: 449-458 2010年
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Two distinct mechanisms for actin capping proteinregulationTwo distinct mechanisms for actin capping proteinregulation- steric and allosteric inhibitionsteric and allosteric inhibition 査読有り
S. Takeda, S. Minakata, R. Koike, I. Kawahata, A. Narita, M. Kitazawa, M. Ota, T.Yamakuni, Y. Maéda, Y. Nitanai
PLos Biol. 8 巻 頁: e1000416 2010年
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Amino acid substitutions at protein-protein interfaces that modulate the oligomeric state 査読有り
H. Nishi, M. Ota
Proteins 78 巻 頁: 1563-1574 2010年
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Alteration of oligomeric state and domain architecture is essential for functional transformation between transferase and hydrolase with the same scaffold 査読有り
R. Koike, A. Kidera, M. Ota
Protein Sci. 18 巻 頁: 2060-2066 2009年
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An evaluation of minimal cellular functions to sustain a bacterial cell 査読有り
Y. Azuma, M. Ota
BMC Syst. Biol. 3 巻 頁: 111 2009年
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An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories 査読有り
H. Sun, H. Ferhatosmanoglu, M. Ota, Y. Wang
BMC Bioinformatics 9 巻 頁: 344 2008年
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Protein structural change upon ligand binding correlates with enzymatic reaction mechanism 査読有り
R. Koike, T. Amemiya, M. Ota, A. Kidera
J. Mol. Biol. 379 巻 頁: 397-401 2008年
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Unfolding pathways of goat α-lactalbumin as revealed in multiple alignment of molecular dynamics trajectories 査読有り
T. Oroguchi, M. Ikeguchi, M. Ota, K. Kuwajima and A. Kidera
J. Mol. Biol. 371 巻 頁: 1354-64 2007年
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Enhanced partial order curve comparison over multiple protein folding trajectories 査読有り
H. Sun, H. Ferhatosmanoglu, M. Ota, Y. Wang
Comput. Syst. Bioinformatics. Conf. 6 巻 頁: 299-310 2007年
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A hyperthermophilic protein acquires function at the cost of stability 査読有り
A. Mukaiyama, M. Haruki, M. Ota, Y. Koga, K. Takano and S. Kanaya
Biochemistry 24 巻 頁: 12673-12679 2006年
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Stabilization of E. coli ribonuclease HI by the 'stability profile of mutant protein' (SPMP)-inspired random and non-random mutagenesis 査読有り
M. Haruki, Y. Saito, M. Ota, K. Nishikawa, S. Kanaya
J. Biotech. 25 巻 頁: 512-522 2006年
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Design of λ Cro fold: solution structure of a monomeric variant of the de novo protein 査読有り
Y. Isogai, Y. Ito, T. Ikeya, Y. Shiro, M. Ota
J. Mol. Biol. 354 巻 頁: 801-814 2005年
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P-cats: Prediction of catalytic residues in proteins from the tertiary structures 査読有り
K. Kinoshita and M. Ota
Bioinformatics 21 巻 頁: 3570-3571 2005年
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Stabilization mechanism of the tryptophan synthase alpha-subunit from Thermus thermophilus HB8: X-ray crystallographic analysis and calorimetry 査読有り
Y. Asada, M. Sawano, K. Ogasahara, J. Nakamura, M. Ota, C. Kuroishi, M. Sugahara, K. Yutani, N. Kunishima
J Biochem (Tokyo) 138 巻 頁: 343-353 2005年
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Phylogeny of protein-folding trajectories reveals a unique pathway to native structure 査読有り
M. Ota, M. Ikeguchi and A. Kidera
Proc. Natl. Acad. Sci. USA 101 巻 頁: 17658-17663 2004年
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Integrative annotation of 21,037 human genes validated by full-length cDNA clones 査読有り
T. Imanishi et al.
PLoS. Biol. 2 巻 頁: E162 2004年